-
1
-
-
0020696807
-
Physiological responses to nutrient limitation
-
Harder, W., and Dijkhuizen, L. (1983) Physiological responses to nutrient limitation. Annu. Rev. Microbiol. 37, 1-23
-
(1983)
Annu. Rev. Microbiol.
, vol.37
, pp. 1-23
-
-
Harder, W.1
Dijkhuizen, L.2
-
2
-
-
0027489706
-
How do non-differentiating bacteria adapt to starvation?
-
Kjelleberg, S., Albertson, N., Flärdh, K., Holmquist, L., Jouper-Jaan, A., Marouga, R., Ostling, J., Svenblad, B., and Weichart, D. (1993) How do non-differentiating bacteria adapt to starvation? Antonie Van Leeuwenhoek 63, 333-341
-
(1993)
Antonie Van Leeuwenhoek
, vol.63
, pp. 333-341
-
-
Kjelleberg, S.1
Albertson, N.2
Flärdh, K.3
Holmquist, L.4
Jouper-Jaan, A.5
Marouga, R.6
Ostling, J.7
Svenblad, B.8
Weichart, D.9
-
3
-
-
0031887807
-
Maltose/maltodextrin system of Escherichia coli: Transport, metabolism, and regulation
-
Boos, W., and Shuman, H. (1998) Maltose/maltodextrin system of Escherichia coli: transport, metabolism, and regulation. Microbiol. Mol. Biol. Rev. 62, 204-229
-
(1998)
Microbiol. Mol. Biol. Rev.
, vol.62
, pp. 204-229
-
-
Boos, W.1
Shuman, H.2
-
4
-
-
0027256676
-
Structural, functional, and evolutionary relationships among extracellular solute-binding receptors of bacteria
-
Tam, R., and Saier, M. H., Jr. (1993) Structural, functional, and evolutionary relationships among extracellular solute-binding receptors of bacteria. Microbiol. Rev. 57, 320-346
-
(1993)
Microbiol. Rev.
, vol.57
, pp. 320-346
-
-
Tam, R.1
Saier, M.H.2
-
5
-
-
84887294881
-
Structural basis for substrate specificity in the Escherichia coli maltose transport system
-
Oldham, M. L., Chen, S., and Chen, J. (2013) Structural basis for substrate specificity in the Escherichia coli maltose transport system. Proc. Natl. Acad. Sci. U.S.A. 110, 18132-18137
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 18132-18137
-
-
Oldham, M.L.1
Chen, S.2
Chen, J.3
-
6
-
-
0036838307
-
Construction of a fluorescent biosensor family
-
de Lorimier, R. M., Smith, J. J., Dwyer, M. A., Looger, L. L., Sali, K. M., Paavola, C. D., Rizk, S. S., Sadigov, S., Conrad, D. W., Loew, L., and Hellinga, H. W. (2002) Construction of a fluorescent biosensor family. Protein Sci. 11, 2655-2675
-
(2002)
Protein Sci.
, vol.11
, pp. 2655-2675
-
-
De Lorimier, R.M.1
Smith, J.J.2
Dwyer, M.A.3
Looger, L.L.4
Sali, K.M.5
Paavola, C.D.6
Rizk, S.S.7
Sadigov, S.8
Conrad, D.W.9
Loew, L.10
Hellinga, H.W.11
-
7
-
-
0031810816
-
ATP-binding-cassette (ABC) transport systems: Functional and structural aspects of the ATP-hydrolyzing subunits/domains
-
Schneider, E., and Hunke, S. (1998) ATP-binding-cassette (ABC) transport systems: Functional and structural aspects of the ATP-hydrolyzing subunits/domains. FEMS Microbiol. Rev. 22, 1-20
-
(1998)
FEMS Microbiol. Rev.
, vol.22
, pp. 1-20
-
-
Schneider, E.1
Hunke, S.2
-
8
-
-
75549087305
-
The evolution of gene duplications: Classifying and distinguishing between models
-
Innan, H., and Kondrashov, F. (2010) The evolution of gene duplications: classifying and distinguishing between models. Nat. Rev. Genet. 11, 97-108
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 97-108
-
-
Innan, H.1
Kondrashov, F.2
-
9
-
-
75149153513
-
The low-affinity phosphate transporter PitA is dispensable for in vitro growth of Mycobacterium smegmatis
-
Gebhard, S., Ekanayaka, N., and Cook, G. M. (2009) The low-affinity phosphate transporter PitA is dispensable for in vitro growth of Mycobacterium smegmatis. BMC Microbiol. 9, 254
-
(2009)
BMC Microbiol.
, vol.9
, pp. 254
-
-
Gebhard, S.1
Ekanayaka, N.2
Cook, G.M.3
-
10
-
-
8244238391
-
Three different putative phosphate transport receptors are encoded by the Mycobacterium tuberculosis genome and are present at the surface of Mycobacterium bovis BCG
-
Lefèvre, P., Braibant, M., de Wit, L., Kalai, M., Röeper, D., Grötzinger, J., Delville, J.-P., Peirs, P., Ooms, J., Huygen, K., and Content, J. (1997) Three different putative phosphate transport receptors are encoded by the Mycobacterium tuberculosis genome and are present at the surface of Mycobacterium bovis BCG. J. Bacteriol. 179, 2900-2906
-
(1997)
J. Bacteriol.
, vol.179
, pp. 2900-2906
-
-
Lefèvre, P.1
Braibant, M.2
De Wit, L.3
Kalai, M.4
Röeper, D.5
Grötzinger, J.6
Delville, J.-P.7
Peirs, P.8
Ooms, J.9
Huygen, K.10
Content, J.11
-
11
-
-
0033987682
-
Characterization of two inducible phosphate transport systems in Rhizobium tropici
-
Botero, L. M., Al-Niemi, T. S., and McDermott, T. R. (2000) Characterization of two inducible phosphate transport systems in Rhizobium tropici. Appl. Environ. Microbiol. 66, 15-22
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 15-22
-
-
Botero, L.M.1
Al-Niemi, T.S.2
McDermott, T.R.3
-
12
-
-
0035479142
-
Deletional bias and the evolution of bacterial genomes
-
Mira, A., Ochman, H., and Moran, N. A. (2001) Deletional bias and the evolution of bacterial genomes. Trends Genet. 17, 589-596
-
(2001)
Trends Genet.
, vol.17
, pp. 589-596
-
-
Mira, A.1
Ochman, H.2
Moran, N.A.3
-
13
-
-
0033609333
-
Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima
-
Nelson, K. E., Clayton, R. A., Gill, S. R., Gwinn, M. L., Dodson, R. J., Haft, D. H., Hickey, E. K., Peterson, J. D., Nelson, W. C., Ketchum, K. A., McDonald, L., Utterback, T. R., Malek, J. A., Linher, K. D., Garrett, M. M., Stewart, A. M., Cotton, M. D., Pratt, M. S., Phillips, C. A., Richardson, D., Heidelberg, J., Sutton, G. G., Fleischmann, R. D., Eisen, J. A., White, O., Salzberg, S. L., Smith, H. O., Venter, J. C., and Fraser, C. M. (1999) Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima. Nature 399, 323-329
-
(1999)
Nature
, vol.399
, pp. 323-329
-
-
Nelson, K.E.1
Clayton, R.A.2
Gill, S.R.3
Gwinn, M.L.4
Dodson, R.J.5
Haft, D.H.6
Hickey, E.K.7
Peterson, J.D.8
Nelson, W.C.9
Ketchum, K.A.10
McDonald, L.11
Utterback, T.R.12
Malek, J.A.13
Linher, K.D.14
Garrett, M.M.15
Stewart, A.M.16
Cotton, M.D.17
Pratt, M.S.18
Phillips, C.A.19
Richardson, D.20
Heidelberg, J.21
Sutton, G.G.22
Fleischmann, R.D.23
Eisen, J.A.24
White, O.25
Salzberg, S.L.26
Smith, H.O.27
Venter, J.C.28
Fraser, C.M.29
more..
-
14
-
-
27144509128
-
An expression-driven approach to the prediction of carbohydrate transport and utilization regulons in the hyperthermophilic bacterium Thermotoga maritima
-
Conners, S. B., Montero, C. I., Comfort, D. A., Shockley, K. R., Johnson, M. R., Chhabra, S. R., and Kelly, R. M. (2005) An expression-driven approach to the prediction of carbohydrate transport and utilization regulons in the hyperthermophilic bacterium Thermotoga maritima. J. Bacteriol. 187, 7267-7282
-
(2005)
J. Bacteriol.
, vol.187
, pp. 7267-7282
-
-
Conners, S.B.1
Montero, C.I.2
Comfort, D.A.3
Shockley, K.R.4
Johnson, M.R.5
Chhabra, S.R.6
Kelly, R.M.7
-
15
-
-
33144472334
-
Several archaeal homologs of putative oligopeptide-binding proteins encoded by Thermotoga maritima bind sugars
-
Nanavati, D. M., Thirangoon, K., and Noll, K. M. (2006) Several archaeal homologs of putative oligopeptide-binding proteins encoded by Thermotoga maritima bind sugars. Appl. Environ. Microbiol. 72, 1336-1345
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 1336-1345
-
-
Nanavati, D.M.1
Thirangoon, K.2
Noll, K.M.3
-
16
-
-
0028067178
-
The bacterial periplasmic histidine-binding protein. Structure/function analysis of the ligand-binding site and comparison with related proteins
-
Oh, B.-H., Kang, C.-H., De Bondt, H., Kim, S.-H., Nikaido, K., Joshi, A. K., and Ames, G. F. (1994) The bacterial periplasmic histidine-binding protein. Structure/function analysis of the ligand-binding site and comparison with related proteins. J. Biol. Chem. 269, 4135-4143
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 4135-4143
-
-
Oh, B.-H.1
Kang, C.-H.2
De Bondt, H.3
Kim, S.-H.4
Nikaido, K.5
Joshi, A.K.6
Ames, G.F.7
-
18
-
-
0027935843
-
Stability of yeast iso-1-ferricytochrome c as a function of pH and temperature
-
Cohen, D. S., and Pielak, G. J. (1994) Stability of yeast iso-1-ferricytochrome c as a function of pH and temperature. Protein Sci. 3, 1253-1260
-
(1994)
Protein Sci.
, vol.3
, pp. 1253-1260
-
-
Cohen, D.S.1
Pielak, G.J.2
-
19
-
-
27244462844
-
Isothermal titration calorimetry
-
Freire, E., Mayorga, O. L., and Straume, M. (1990) Isothermal titration calorimetry. Anal. Chem. 62, 950A-959A
-
(1990)
Anal. Chem.
, vol.62
, pp. 950A-959A
-
-
Freire, E.1
Mayorga, O.L.2
Straume, M.3
-
20
-
-
0031059866
-
Processing of x-ray diffraction data collected in oscillation mode
-
Otwinowski, Z., and Minor, W. (1997) Processing of x-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
21
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project, Number 4
-
Collaborative Computational Project, Number 4 (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D Biol. Crystallogr. 50, 760-763
-
(1994)
Acta Crystallogr. D Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
23
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams, P. D., Afonine, P. V., Bunkóczi, G., Chen, V. B., Davis, I. W., Echols, N., Headd, J. J., Hung, L. W., Kapral, G. J., Grosse-Kunstleve, R. W., Mc-Coy, A. J., Moriarty, N. W., Oeffner, R., Read, R. J., Richardson, D. C., Richardson, J. S., Terwilliger, T. C., and Zwart, P. H. (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D Biol. Crystallogr. 66, 213-221
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkóczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
Mc-Coy, A.J.11
Moriarty, N.W.12
Oeffner, R.13
Read, R.J.14
Richardson, D.C.15
Richardson, J.S.16
Terwilliger, T.C.17
Zwart, P.H.18
-
24
-
-
3242886389
-
MOLPROBITY: Structure validation and all-atom contact analysis for nucleic acids and their complexes
-
Davis, I. W., Murray, L. W., Richardson, J. S., and Richardson, D. C. (2004) MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes. Nucleic Acids Res. 32, W615-W619
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. W615-W619
-
-
Davis, I.W.1
Murray, L.W.2
Richardson, J.S.3
Richardson, D.C.4
-
25
-
-
0033954256
-
The Protein Data Bank
-
Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N., and Bourne, P. E. (2000) The Protein Data Bank. Nucleic Acids Res. 28, 235-242
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
26
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. (1990) Basic local alignment search tool. J. Mol. Biol. 215, 403-410
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
27
-
-
34548671159
-
Asymmetry in the structure of the ABC transporter-binding protein complex BtuCD-BtuF
-
Hvorup, R. N., Goetz, B. A., Niederer, M., Hollenstein, K., Perozo, E., and Locher, K. P. (2007) Asymmetry in the structure of the ABC transporter-binding protein complex BtuCD-BtuF. Science 317, 1387-1390
-
(2007)
Science
, vol.317
, pp. 1387-1390
-
-
Hvorup, R.N.1
Goetz, B.A.2
Niederer, M.3
Hollenstein, K.4
Perozo, E.5
Locher, K.P.6
-
28
-
-
36549018568
-
Crystal structure of a catalytic intermediate of the maltose transporter
-
Oldham, M. L., Khare, D., Quiocho, F. A., Davidson, A. L., and Chen, J. (2007) Crystal structure of a catalytic intermediate of the maltose transporter. Nature 450, 515-521
-
(2007)
Nature
, vol.450
, pp. 515-521
-
-
Oldham, M.L.1
Khare, D.2
Quiocho, F.A.3
Davidson, A.L.4
Chen, J.5
-
29
-
-
70450285142
-
Structural analysis of semi-specific oligosaccharide recognition by a cellulose-binding protein of Thermotoga maritima reveals adaptations for functional diversification of the oligopeptide periplasmic binding protein fold
-
Cuneo, M. J., Beese, L. S., and Hellinga, H. W. (2009) Structural analysis of semi-specific oligosaccharide recognition by a cellulose-binding protein of Thermotoga maritima reveals adaptations for functional diversification of the oligopeptide periplasmic binding protein fold. J. Biol. Chem. 284, 33217-33223
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 33217-33223
-
-
Cuneo, M.J.1
Beese, L.S.2
Hellinga, H.W.3
-
30
-
-
77953127962
-
A structural classification of substrate-binding proteins
-
Berntsson, R. P., Smits, S. H., Schmitt, L., Slotboom, D. J., and Poolman, B. (2010) A structural classification of substrate-binding proteins. FEBS Lett. 584, 2606-2617
-
(2010)
FEBS Lett.
, vol.584
, pp. 2606-2617
-
-
Berntsson, R.P.1
Smits, S.H.2
Schmitt, L.3
Slotboom, D.J.4
Poolman, B.5
-
31
-
-
5144226338
-
The DxDxDG motif for calcium binding: Multiple structural contexts and implications for evolution
-
Rigden, D. J., and Galperin, M. Y. (2004) The DxDxDG motif for calcium binding: multiple structural contexts and implications for evolution. J. Mol. Biol. 343, 971-984
-
(2004)
J. Mol. Biol.
, vol.343
, pp. 971-984
-
-
Rigden, D.J.1
Galperin, M.Y.2
-
32
-
-
0035094475
-
Geometry of metal-ligand interactions in proteins
-
Harding, M. M. (2001) Geometry of metal-ligand interactions in proteins. Acta Crystallogr. D Biol. Crystallogr. 57, 401-411
-
(2001)
Acta Crystallogr. D Biol. Crystallogr.
, vol.57
, pp. 401-411
-
-
Harding, M.M.1
-
33
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen, V. B., Arendall, W. B., 3rd, Headd, J. J., Keedy, D. A., Immormino, R. M., Kapral, G. J., Murray, L. W., Richardson, J. S., and Richardson, D. C. (2010) MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr. D Biol. Crystallogr. 66, 12-21
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
Arendall 3rd, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
Kapral, G.J.6
Murray, L.W.7
Richardson, J.S.8
Richardson, D.C.9
-
34
-
-
34548232365
-
Inference of macromolecular assemblies from crystalline state
-
Krissinel, E., and Henrick, K. (2007) Inference of macromolecular assemblies from crystalline state. J. Mol. Biol. 372, 774-797
-
(2007)
J. Mol. Biol.
, vol.372
, pp. 774-797
-
-
Krissinel, E.1
Henrick, K.2
-
35
-
-
0011729692
-
Two periplasmic transport proteins which interact with a common membrane receptor show extensive homology: Complete nucleotide sequences
-
Higgins, C. F., and Ames, G. (1981) Two periplasmic transport proteins which interact with a common membrane receptor show extensive homology: complete nucleotide sequences. Proc. Natl. Acad. Sci. U.S.A. 78, 6038-6042
-
(1981)
Proc. Natl. Acad. Sci. U.S.A.
, vol.78
, pp. 6038-6042
-
-
Higgins, C.F.1
Ames, G.2
-
36
-
-
0037470149
-
Carbohydrate-induced differential gene expression patterns in the hyperthermophilic bacterium Thermotoga maritima
-
Chhabra, S. R., Shockley, K. R., Conners, S. B., Scott, K. L., Wolfinger, R. D., and Kelly, R. M. (2003) Carbohydrate-induced differential gene expression patterns in the hyperthermophilic bacterium Thermotoga maritima. J. Biol. Chem. 278, 7540-7552
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 7540-7552
-
-
Chhabra, S.R.1
Shockley, K.R.2
Conners, S.B.3
Scott, K.L.4
Wolfinger, R.D.5
Kelly, R.M.6
|