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Volumn 91, Issue 1, 2013, Pages 29-37

Use of principal component approach to predict direct genomic breeding values for beef traits in Italian Simmental cattle

Author keywords

Beef trait; Genomic selection; Principal component analysis

Indexed keywords

ANIMAL; ARTICLE; BREEDING; CATTLE; DAIRYING; FEMALE; GENETIC MARKER; GENETIC SELECTION; GENETICS; GENOMICS; GENOTYPE; MALE; PHYSIOLOGY; PRINCIPAL COMPONENT ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84873961373     PISSN: 00218812     EISSN: 15253163     Source Type: Journal    
DOI: 10.2527/jas.2011-5061     Document Type: Article
Times cited : (5)

References (30)
  • 2
    • 84882640702 scopus 로고    scopus 로고
    • ANAPRI (Associazione Nazionale Allevatori Bovini di Razza Pezzata Rossa italiana, Udine, Italy), (Accessed 6 October 2012.)
    • ANAPRI (Associazione Nazionale Allevatori Bovini di Razza Pezzata Rossa italiana, Udine, Italy). 2010. L'ndice di selezione. http://www.anapri.eu/index.php?option=com_content&view=article&id=68&Itemid=97. (Accessed 6 October 2012.)
    • (2010) L'ndice Di Selezione
  • 3
    • 84882586821 scopus 로고    scopus 로고
    • Associazione Italiana Allevatori, (Accessed 6 October 2012.)
    • Associazione Italiana Allevatori. 2011. Bollettino dei controlli della produttività del latte 2011. http://bollettino.aia.it/bollettino/Doc/TI_Note_Bo.pdf p. 3 (Accessed 6 October 2012.)
    • (2011) Bollettino Dei Controlli Della Produttività Del Latte 2011 , pp. 3
  • 4
    • 77955047597 scopus 로고    scopus 로고
    • Multivariate analysis of a genome-wide association study in dairy cattle
    • Bolormaa, S., J. E. Pryce, B. J. Hayes, and M. E. Goddard. 2010. Multivariate analysis of a genome-wide association study in dairy cattle. J. Dairy Sci 93:3818-3833.
    • (2010) J. Dairy Sci , vol.93 , pp. 3818-3833
    • Bolormaa, S.1    Pryce, J.E.2    Hayes, B.J.3    Goddard, M.E.4
  • 5
    • 36849052387 scopus 로고    scopus 로고
    • Accuracy of breeding values when using and ignoring the polygenic effect in genomic breeding value estimation with a marker density of one SNP per cM
    • Calus, M. P. L., and R. F. Veerkamp. 2007. Accuracy of breeding values when using and ignoring the polygenic effect in genomic breeding value estimation with a marker density of one SNP per cM. J. Anim. Breed. Genet. 124:362-368.
    • (2007) J. Anim. Breed. Genet , vol.124 , pp. 362-368
    • Calus, M.P.L.1    Veerkamp, R.F.2
  • 7
    • 54449097329 scopus 로고    scopus 로고
    • Accuracy of predicting the genetic risk of disease using a genome-wide approach
    • Daetwyler, H. D., B. Villanueva, and J. A. Woolliams. 2008. Accuracy of predicting the genetic risk of disease using a genome-wide approach. Plos One 3:E3395.
    • (2008) Plos One , vol.3
    • Daetwyler, H.D.1    Villanueva, B.2    Woolliams, J.A.3
  • 8
    • 80755139682 scopus 로고    scopus 로고
    • The impact of the rank of marker variance-covariance matrix in principal component evaluation for genomic selection applications
    • Dimauro, C., M. Cellesi, M. A. Pintus, and N. P. Macciotta. 2011. The impact of the rank of marker variance-covariance matrix in principal component evaluation for genomic selection applications. J. Anim. Breed. Genet. 128:440-445.
    • (2011) J. Anim. Breed. Genet , vol.128 , pp. 440-445
    • Dimauro, C.1    Cellesi, M.2    Pintus, M.A.3    Macciotta, N.P.4
  • 9
    • 80052801816 scopus 로고    scopus 로고
    • The nature, scope and impact of genomic prediction in beef cattle in the United States
    • Garrick, D. J. 2011. The nature, scope and impact of genomic prediction in beef cattle in the United States. Genet. Sel. Evol. 43:17.
    • (2011) Genet. Sel. Evol , vol.43 , pp. 17
    • Garrick, D.J.1
  • 11
    • 77952787476 scopus 로고    scopus 로고
    • The impact of genetic relationship information on genomic breeding values in German Holstein cattle
    • Habier, D., J. Tetens, F. R. Seefried, P. Lichtner, and G. Thaller. 2010. The impact of genetic relationship information on genomic breeding values in German Holstein cattle. Genet. Sel. Evol. 42:5.
    • (2010) Genet. Sel. Evol , vol.42 , pp. 5
    • Habier, D.1    Tetens, J.2    Seefried, F.R.3    Lichtner, P.4    Thaller, G.5
  • 13
    • 65249179516 scopus 로고    scopus 로고
    • Increased accuracy of artificial selection by using the realized relationship matrix
    • Hayes, B. J., P. M. Visscher, and M. E. Goddard. 2009b. Increased accuracy of artificial selection by using the realized relationship matrix. Genet. Res. 91:47-60.
    • (2009) Genet. Res , vol.91 , pp. 47-60
    • Hayes, B.J.1    Visscher, P.M.2    Goddard, M.E.3
  • 14
    • 36849038424 scopus 로고    scopus 로고
    • Estimation of genome-wide haplotype effects in half-sib designs
    • Kolbehdari, D., L. R. Schaeffer, and J. A. B. Robinson. 2007. Estimation of genome-wide haplotype effects in half-sib designs. J. Anim. Breed. Genet. 124: 356-361.
    • (2007) J. Anim. Breed. Genet , vol.124 , pp. 356-361
    • Kolbehdari, D.1    Schaeffer, L.R.2    Robinson, J.A.B.3
  • 15
    • 38949168198 scopus 로고    scopus 로고
    • Technical note: Computing strategies in genome-wide selection
    • Legarra, A., and I. Misztal. 2008. Technical note: Computing strategies in genome-wide selection. J. Dairy Sci. 91:360-366.
    • (2008) J. Dairy Sci , vol.91 , pp. 360-366
    • Legarra, A.1    Misztal, I.2
  • 16
    • 80052222300 scopus 로고    scopus 로고
    • Impacts of both reference population size and inclusion of a residual polygenic effect on the accuracy of genomic prediction
    • Liu, Z. T., F. R. Seefried, F. Reinhardt, S. Rensing, G. Thaller, and R. Reents. 2011. Impacts of both reference population size and inclusion of a residual polygenic effect on the accuracy of genomic prediction. Genet. Sel. Evol. 43:19.
    • (2011) Genet. Sel. Evol , vol.43 , pp. 19
    • Liu, Z.T.1    Seefried, F.R.2    Reinhardt, F.3    Rensing, S.4    Thaller, G.5    Reents, R.6
  • 17
    • 79960330750 scopus 로고    scopus 로고
    • Dimension reduction and variable selection for genomic selection: Application to predicting milk yield in Holsteins
    • Long, N., D. Gianola, G. J. M. Rosa, and K. A. Weigel. 2011. Dimension reduction and variable selection for genomic selection: Application to predicting milk yield in Holsteins. J. Anim. Breed. Genet. 128:247-257.
    • (2011) J. Anim. Breed. Genet , vol.128 , pp. 247-257
    • Long, N.1    Gianola, D.2    Rosa, G.J.M.3    Weigel, K.A.4
  • 18
    • 77952995139 scopus 로고    scopus 로고
    • Using eigenvalues as variance priors in the prediction of genomic breeding values by principal component analysis
    • Macciotta, N. P. P., G. Gaspa, R. Steri, E. L. Nicolazzi, C. Dimauro, C. Pieramati, and A. Cappio-Borlino. 2010a. Using eigenvalues as variance priors in the prediction of genomic breeding values by principal component analysis. J. Dairy Sci. 93:2765-2774.
    • (2010) J. Dairy Sci , vol.93 , pp. 2765-2774
    • Macciotta, N.P.P.1    Gaspa, G.2    Steri, R.3    Nicolazzi, E.L.4    Dimauro, C.5    Pieramati, C.6    Cappio-Borlino, A.7
  • 20
    • 0035045051 scopus 로고    scopus 로고
    • Prediction of total genetic value using genome-wide dense marker maps
    • Meuwissen, T. H. E., B. J. Hayes, and M. E. Goddard. 2001. Prediction of total genetic value using genome-wide dense marker maps. Genetics 157:1819-1829.
    • (2001) Genetics , vol.157 , pp. 1819-1829
    • Meuwissen, T.H.E.1    Hayes, B.J.2    Goddard, M.E.3
  • 21
    • 77949812757 scopus 로고    scopus 로고
    • A comparison of five methods to predict genomic breeding values of dairy bulls from genome-wide SNP markers
    • Moser, G., B. Tier, R. E. Crump, M. S. Khatkar, and H. W. Raadsma. 2009. A comparison of five methods to predict genomic breeding values of dairy bulls from genome-wide SNP markers. Genet. Sel. Evol. 41:56.
    • (2009) Genet. Sel. Evol , vol.41 , pp. 56
    • Moser, G.1    Tier, B.2    Crump, R.E.3    Khatkar, M.S.4    Raadsma, H.W.5
  • 22
    • 79955121390 scopus 로고    scopus 로고
    • Differences among methods to validate genomic evaluations for dairy cattle
    • Olson, K. M., P. M. VanRaden, M. E. Tooker, and T. A. Cooper. 2011. Differences among methods to validate genomic evaluations for dairy cattle. J. Dairy Sci. 94:2613-2620.
    • (2011) J. Dairy Sci , vol.94 , pp. 2613-2620
    • Olson, K.M.1    Vanraden, P.M.2    Tooker, M.E.3    Cooper, T.A.4
  • 25
    • 77950961027 scopus 로고    scopus 로고
    • Impact of reduced marker set estimation of genomic relationship matrices on genomic selection for feed efficiency in Angus cattle
    • Rolf, M. M., J. F. Taylor, R. D. Schnabel, S. D. McKay, M. C. McClure, S. L. Northcutt, M. S. Kerley, and R. L. Weaber. 2010. Impact of reduced marker set estimation of genomic relationship matrices on genomic selection for feed efficiency in Angus cattle. BMC genetics 11: 24.
    • (2010) BMC Genetics , vol.11 , pp. 24
    • Rolf, M.M.1    Taylor, J.F.2    Schnabel, R.D.3    McKay, S.D.4    McClure, M.C.5    Northcutt, S.L.6    Kerley, M.S.7    Weaber, R.L.8
  • 28
    • 33645231505 scopus 로고    scopus 로고
    • Assessment of the adequacy of mathematical models
    • Tedeschi, L. O. 2006. Assessment of the adequacy of mathematical models. Agric. Syst. 89:225-247.
    • (2006) Agric. Syst , vol.89 , pp. 225-247
    • Tedeschi, L.O.1
  • 30
    • 68149121918 scopus 로고    scopus 로고
    • Selection of single-nucleotide polymorphisms and quality of genotypes used in genomic evaluation of dairy cattle in the United States and Canada
    • Wiggans, G. R., T. S. Sonstegard, P. M. Vanraden, L. K. Matukumalli, R. D. Schnabel, J. F. Taylor, F. S. Schenkel, and C. P. Van Tassell. 2009. Selection of single-nucleotide polymorphisms and quality of genotypes used in genomic evaluation of dairy cattle in the United States and Canada. J. Dairy Sci. 92:3431-3436.
    • (2009) J. Dairy Sci , vol.92 , pp. 3431-3436
    • Wiggans, G.R.1    Sonstegard, T.S.2    Vanraden, P.M.3    Matukumalli, L.K.4    Schnabel, R.D.5    Taylor, J.F.6    Schenkel, F.S.7    van Tassell, C.P.8


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