Characterization of the colletotrichum species causing anthracnose in andean blackberry in Colombia

Plant Disease

Volumn 98, Issue 11, 2014, Pages 1503-1513

  Afanador Kafuri, Lucía ^a   González, Alonso ^b   Gañán, Lederson ^c   Mejía, Juan Fernando ^d   Cardona, Nadya ^d   Alvarez, Elizabeth ^d  

^a UNIVERSIDAD NACIONAL DE COLOMBIA   (Colombia)

^b INTERNATIONAL CENTER FOR TROPICAL AGRICULTURE CIAT   (Colombia)

^c UNIVERSIDAD DE CALDAS   (Colombia)

^d UNIVERSIDAD DE ANTIOQUIA   (Colombia)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84908331516     PISSN: 01912917     EISSN: None     Source Type: Journal    
DOI: 10.1094/PDIS-07-13-0752-RE     Document Type: Article

References (48)

1. Afanador-Kafuri, L., Minz, D., Maymon, M., and Freeman, S. 2003. Characterization of Colletotrichum isolates from tamarillo, passiflora, and mango in Colombia and identification of a unique species from the genus. Phytopathology 93:579-587.
2. Alvarez, E., Gañán, L., Rojas, A., Mejía, J. F., Llano, G. A., and González, A. 2014. Diversity and Pathogenicity of Colletotrichum species isolated from Soursop in Colombia. Eur. J. Plant Pathol. 139:325-338. Online publication. doi:10.1007/s10658-014-0388-7
3. Alvarez, E., Ospina, C. A., Mejía, J. F., and Llano, G. A. 2004. Caracterización morfológica, patogénica y genética del agente causal de la antracnosis (Colletotrichum gloeosporioides) en guanábana (Annona muricata). Fitopatol. Colomb. 28:1-8.
4. Álvarez, R., Barrero, L. S., Beltrán, C. R., and Cotes A. M. 2009. Capacitación sobre el manejo de un lote experimental para el cultivo de la Mora en Silvania (Cundinamarca). Page 9-24 in: Caracterización, evaluación y producción de material limpio de mora con alto valor agregado. L. S. Barrero, ed. Produmedios, Bogotá, Colombia.
5. Arenas, A., Alvarez, E., Afanador-Kafuri, L., Mejía J. F., and González, A. 2007. Especies de Colletotrichum asociadas con la antracnosis de la mora de Castilla (Rubus glaucus Benth.) en el Valle del Cauca. Fitopatol. Colomb. 31:7-14.
6. Botero, M. J., and Franco, G. 2007. Identificación y caracterización preliminar del agente causal de la mancha necrótica de las hojas de la mora (Rubus glaucus) en el muncipio de Trujillo (Valle del Cauca, Colombia). Rev. Corpoica Cienc. Tecnol. Agropec. 8:22-25.
7. Brown, A. E., Sreenivasaprasad, S., and Timmer, L. 1996. Molecular characterization of slow-growing orange and key lime anthracnose strains of Colletotrichum from citrus as C. acutatum. Phytopathology 86:523-527.
8. Cai, L., Hyde, K. D., Taylor, P. W. J., Weir, B. S., Waller, J., Abang, M. M., Zhang, J. Z., Yang, Y. L., Phoulivong, S., Liu, Z. Y., Prihastuti, H., Shivas, R. G., McKenzie, E. H. C., and Johnston, P. R. 2009. A polyphasic approach for studying Colletotrichum. Fungal Divers. 39:183-204.
9. Cannon, P. F., U. Damm, Johnston, P. R., and Weir, B. S. 2012. Colletotrichum— current status and future directions. Stud. Mycol. 73:181-213.
10. Carbone, I., and Kohn, L. M. 1999. A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91:553-556.
11. Chaky, J., Anderson, K., Moss, M., and Vaillancourt, L. 2001. Surface hydrophobicity and surface rigidity induce spore germination in Colletotrichum graminicola. Phytopathology 91:558-564.
12. Crouch, J. A., Bein, L. A., Cortese, L. M., Bonos, S. A., and Clark, B. B. 2009a. Anthracnose disease of switchgrass caused by the novel fungal species Colletotrichum navitas. Mycol. Res. 113:1411-1421.
13. Crouch, J. A., Clarke, B. B., White, J. F., and Hillman, B. I. 2009c. Systematic analysis of the falcate-spored graminicolous Colletotrichum and a description of six new species of the fungus from warm-season grasses. Mycologia 101:717-732.
14. Damm, U., Cannon, P. F., Woudenberg, J. H. C., and Crous, P. W. 2012. The Colletotrichum acutatum species complex. Stud. Mycol.73:37-113.
15. Damm, U., Cannon, P. F., Woudenberg, J. H. C., Johnston, P. R., Weir, B. S., Tan, Y. P., Shivas, R. G., and Crous, P. W. 2012. The Colletotrichum boninense species complex. Stud. Mycol. 73:1-36.
16. Franco, G., and Giraldo, M. 2002. El cultivo de la mora: Manual de asistencia técnica, 5th ed. Corporación Colombiana de Investigación Agropecuaria (CORPOICA), Federación Nacional de Cafeteros de Colombia, Servicio Nacional de Aprendizaje SENA Comité Técnico Agropecuario de Risaralda, and Unidad Municipal de Asistencia Técnica Agropecuaria (UMATA), Risaralda, Colombia.
17. Glass, N. L., and Donaldson, G. C. 1995. Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Applied and Environmental Microbiology 61:1323-1330.
18. Guerber, J. C., Liu, B., Correll, J. C., and Johnston, P. R. 2003. Characterization of diversity in Colletotrichum acutatum sensu lato by sequence analysis of two gene introns, mtDNA and intron RFLPs, and mating compatibility. Mycologia 95:872-895.
19. Jiménez, D., Cock, J., Satizábal, F., Barreto, M., Pérez-Uribe, A., Jarvis, A., and Van Damme, P. 2009. Analysis of Andean blackberry (Rubus glaucus) production models obtained by means of artificial neural networks exploiting information collected by small-scale growers in Colombia and publicly available meteorological data. Comput. Electron. Agric. 69:198-208.
20. Kück, P., and Meusemann, K. 2010. FASconCAT: Convenient handling of data matrices. Mol. Phylogenet. Evol. 56:1115-1118.
21. Lima, J. S., Figueiredo, J. G., Gomes, R. G., Stringari, D., Goulin, E. H., Adamoski, D., Kava-Cordeiro, V., Galli-Terasawa, L. V., and Glienke, C. 2012. Genetic diversity of Colletotrichum spp., an endophytic fungi in a medicinal plant, Brazilian pepper tree. ISRN Microbiol. Online journal. Vol. 2012, Art. ID 215716. doi:10.5402/2012/215716
22. Mahuku, G. S. 2004. A simple extraction method suitable for PCR-based analysis of plant, fungal and bacterial DNA. Plant Mol. Biol. Rep. 22:71-81.
23. Meret, M., Brat, P., Mertz, M., Lebrun, M., and Gaeta, Z. 2011. Contribution to aroma potential of Andean blackberry (Rubus glaucus Benth.). Food Res. Int. 44:54-60.
24. Mills, P. R., Sreenivasaprasad, S., and Brown, A. E. 1992. Detection and differentiation of Colletotrichum gloeosporioides isolates using PCR. FEMS Microbiol. Lett. 98:137-144.
25. Munsell Color. 1990. Munsell Soil Color Charts, revised edition. Macbeth Division of Kollmorgen Instruments Corporation, Baltimore, MD.
26. O’Donnell, K., Nirenberg, H., Aoki, T., and Cigelnik, E. 2000. A multigene phylogeny of the Gibberella fujikuroi species complex: Detection of additional phylogenetically distinct species. Mycoscience 41:61-78.
27. Osorio, C., Hurtado, N., Dawid, C., Hofmann, T., Heredia-Mira, F. J., and Morales, A. L. 2012. Chemical characterisation of anthocyanins in tamarillo (Solanum betaceum Cav.) and Andes berry (Rubus glaucus Benth.) fruits. Food Chem. 132:1915-1921.
28. Peres, N. A., Timmer, L. W., Adaskaveg, J. E., and Corell, J. C. 2005. Lifestyles of Colletotrichum acutatum. Plant Dis. 41:84-95.
29. Phoulivong, S., Cai, L., Chen, H., McKenzie, E. H. C., Abdelsalam, K., Chukeatirote, E., and Hyde, K. D. 2010. Colletotrichum gloeosporioides is not a common pathogen on tropical fruits. Fungal Divers. 44:33-43.
30. Phoulivong, S., McKenzie, E. H. C., and Hyde, K. D. 2012. Cross infection of Colletotrichum species; a case study with tropical fruits. Curr. Res. Environ. Appl. Mycol. 2:99-111.
31. Pileggi, S. A., Vieira de Oliveira, S. F., Andrade, C. W., Vicente, V. A., Dalzoto, P. do R., da Cruz, G., Gabardo, J., Massola, N., Tozze, H. J., Pillegi, M., Kava-Corderiro, V., Galli-Terasawa, L. V., Pimentel, I. C., Stringari, D., and Glienke, C. 2009. Molecular and morphological markers for rapid distinction between two Colletotrichum species. Can. J. Microbiol. 55:1076-1088.
32. Posada, D. 2008. jModelTest: Phylogenetic model averaging. Mol. Biol. Evol. 25:1253-1256.
33. Prihastuti, H., Cai, L., Chen, H., McKenzie, E. H. C., and Hyde, K. D. 2009. Characterization of Colletotrichum species associated with coffee berries in Chiang Mai, Thailand. Fungal Divers. 39:89-109.
34. Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M., and Huelsenbeck, J. P. 2012. MrBayes v. 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Syst. Biol. 61:539-542.
35. Rueda, K., Saldarriaga, A., Cadavid-Restrepo, G. E., Saldamando, C. I., Cañas, G. P., and Arango, R. E. 2013. Differential organ distribution, pathogenicity and benomyl sensitivity of Colletotrichum spp. from blackberry plants in northern Colombia. J. Phytopathol. 161:246-253.
36. Saldarriaga-Cardona, A., Castaño Zapata, J., and Arango Isaza, R. A. 2008. Caracterización del agente causante de la antracnosis en tomate de árbol, manzano y mora. Rev. Acad. Colomb. Cienc. Exactas, Fis. Nat. 32:145-156.
37. SAS Institute Inc. 2008. SAS/STAT 9.2 User’s Guide. SAS Institute Inc., Cary, NC.
38. Sreenivasaprasad, S., Sharada, K., Brown, A. E., and Mills P. R. 1996. PCRbased detection of Colletotrichum acutatum on strawberry. Plant Pathol. 45:650-655.
39. Stephenson, S. A., Green, J. R., Manners, J. M., and Maclean, D. J. 1997. Cloning and characterisation of glutamine synthetase from Colletotrichum gloeosporioides and demonstration of elevated expression during pathogenesis on Stylosanthes guianensis. Curr. Genet. 31:447-454.
40. Stewart, P. J., Clark, J. R., and Fenn, P. 2004. Evaluation of resistance to Erwinia amylovora and Botryosphaeria dothidea in eastern US blackberry cultivars. in: Horticultural Studies 2003. J. A. Robbins, B. Murphy, and M. Richardson, eds. Ark. Agric. Exp. Stn. Res. Ser. 520:32-34.
41. Talhinhas, P., Sreenivasaprasad, S., Neves-Martins, J., and Oliveira, H. 2005. Molecular and phenotypic analyses reveal association of diverse Colletotrichum acutatum groups and low level of C. gloeosporioides with olive anthracnose. Appl. Environ. Microbiol. 71:2987-2998.
42. Tamayo, P. J. 1995. Muerte descendente de ramas y mildeo velloso de la mora en Antioquia. ASCOLFI Inf. 21:72-73.
43. Tamayo, P. J., and Peláez, A. 2000. Caracterización de daños y pérdidas causadas por enfermedades del fruto de la mora de Castilla (Rubus glaucus Benth.) en Antioquia. Pages 174-179 in: Proc. III Seminario de Frutales de Clima Frío Moderado. Manizales, Colombia.
44. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S. 2011. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28:2731-2739.
45. Tao, G., Hyde, K. D., and Cai, L. 2013. Species-specific real-time PCR detection of Colletotrichum kahawae. J. Appl. Microbiol. Online publication. doi:10.1111/jam.12068
46. Waller, J. M., Bridge, P. D., Black, R., and Hakiza, G. 1993. Characterization of the coffee berry disease pathogen, Colletotrichum kahawae sp. nov. Mycol. Res. 97:989-994.
47. Weir, B. S., Johnston, P. R., and Damm, U. 2012. The Colletotrichum gloeosporioides species complex. Stud. Mycol.73:115-180.
48. White, T. J., Bruns, T., Lee, S., and Taylor, J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Pages 315- 322 in: PCR Protocols: A Guide to Methods and Applications. M. A. Innis, D. H. Gelfand, and J. J. Sninsky, eds. Academic Press, San Diego, CA.