Molecular and morphological markers for rapid distinction between 2 Colletotrichum species

Canadian Journal of Microbiology

Volumn 55, Issue 9, 2009, Pages 1076-1088

  Pileggi, Sônia Alvim Veiga ^a,d   Vieira De Oliveira, Sarah Franco ^b   Andrade, Caroline Waculicz ^b   Vicente, Vânia Aparecida ^b   Dalzoto, Patrícia Do Rocio ^b   Kniphoff Da Cruz, Gerson ^a   Gabardo, Juarez ^b   Massola Jr , Nelson Sidnei ^c   Tozze Jr , Hugo José ^c   Pileggi, Marcos ^a   Kava Cordeiro, Vanessa ^b   Galli Terasawa, Lygia Vitória ^b   Pimentel, Ida Chapaval ^b   Stringari, Danyelle ^b   Glienke, Chirlei ^b  

^a STATE UNIVERSITY OF PONTA GROSSA   (Brazil)

^b FEDERAL UNIVERSITY OF PARANÁ   (Brazil)

^c UNIVERSITY OF SÃO PAULO   (Brazil)

^d Departamento de Física ^*  (Brazil)

Author keywords

Colletotrichum boninense; Colletotrichum gloeosporioides; Endophytic fungi; ITS; RAPD

Indexed keywords

COLLETOTRICHUM BONINENSE; COLLETOTRICHUM GLOEOSPORIOIDES; ENDOPHYTIC FUNGI; ITS; RAPD;

DIAGNOSIS; INTELLIGENT VEHICLE HIGHWAY SYSTEMS; MOLECULAR BIOLOGY;

FUNGI;

DNA; INTERNAL TRANSCRIBED SPACER 1; INTERNAL TRANSCRIBED SPACER 2; MOLECULAR MARKER;

AGRICULTURAL APPLICATION; ANTIMICROBIAL ACTIVITY; BIOACTIVITY; DICOTYLEDON; ENDOPHYTE; FUNGUS; GENE; GENETIC MARKER; INDUSTRIAL PRACTICE; MEDICINAL PLANT; MEDICINE; MOLECULAR ANALYSIS; MORPHOLOGY; POLYMERASE CHAIN REACTION;

ARTICLE; COLLETOTRICHUM; CONTROLLED STUDY; DNA SEQUENCE; FUNGAL STRAIN; FUNGUS ISOLATION; GENETIC VARIABILITY; MAYTENUS; MORPHOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RANDOM AMPLIFIED POLYMORPHIC DNA;

BASE SEQUENCE; BRAZIL; CLUSTER ANALYSIS; COLLETOTRICHUM; DNA FINGERPRINTING; DNA PRIMERS; DNA, FUNGAL; DNA, RIBOSOMAL; DNA, RIBOSOMAL SPACER; MAYTENUS; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; RNA, RIBOSOMAL, 5.8S; SEQUENCE ANALYSIS, DNA;

COLLETOTRICHUM; COLLETOTRICHUM BONINENSE; FUNGI; GLOMERELLA; GLOMERELLA CINGULATA; MAYTENUS ILICIFOLIA;

EID: 70349759532     PISSN: 00084166     EISSN: None     Source Type: Journal    
DOI: 10.1139/W09-059     Document Type: Article

References (52)

1. Afanador-Kafuri, L., Minz, D., Maymon, M., and Freeman, S. 2003. Characterization of Colletotrichum isolates from tamarillo, passiflora, and mango in Colombia and identification of a unique species from the genus. Phytopathology, 93(5): 579-587. doi:10.1094/PHYTO.2003.93.5.579. PMID:18942980.
2. Azevedo, J.L., Maccheroni, W., Jr., Pereira, J.O., and Araújo, W.L. 2000. Endophytic microorganisms: a review on insect control and recent advances on tropical plants. Electron. J. Biotechnol. 3: 40-65.
3. Barnett, H.L., and Hunter, B.B. 1987. Illustrated genera of imperfect fungi. Macmillan Publishing Company, New York.
4. Brown, A.E., Sreenivasaprasad, S., and Timmer, L.W. 1996. Molecular characterization of slow-growing orange and key lime anthracnose strains of Colletotrichum from citrus as C. acutatum. Phytopathology, 86(5): 523-527. doi:10.1094/Phyto-86-523.
5. Cano, J., Guarro, J., and Gené, J. 2004. Molecular and morphological identification of Colletotrichum species of clinical interest. J. Clin. Microbiol. 42(6): 2450-2454. doi:10.1128/JCM.42.6.2450-2454.2004. PMID:15184418.
6. Coelho, A.S.G. 2005. BOOD. Version 3.04 [computer program]. Avaliação de dendrogramas baseados em estimativas de distâncias/similaridades genéticas através do procedimento de bootstraps. Departamento de Biologia Geral, Instituto de Ciências Biológicas, Universidade Federal de Goiás.
7. Corsino, J., de Carvalho, P.R.F., Kato, M.J., Latorre, L.R., Oliveira, O.M.M.F., Araújo, A.R., et al. 2000. Biosynthesis of friedelane and quinonemethide triterpenoids is compartmentalized in Maytenus aquifolium and Salacia campestris. Phytochemistry, 55(7): 741-748. doi:10.1016/S0031-9422(00) 00285-5. PMID: 11190390.
8. De Hoog, G.S., and Guarro, J. 2004. Atlas of clinical fungi. Centraalbureau voor Schimmelcultures, Utrecht, NED/Universitat Rovira i Virgili, Reus, Spain.
9. de Hoog, G.S., Vicente, V., Caligiorne, R.B., Kantarcioglu, S., Tintelnot, K., Gerrits van den Ende, A.H.G., and Haase, G. 2003. Species diversity and polymorphism in the Exophiala spinifera clade containing opportunistic black yeast-like fungi. J. Clin. Microbiol. 41(10): 4767-4778. doi:10.1128/JCM.41.10. 4767-4778.2003. PMID:14532218.
10. de Oliveira, J.F., Braga, A.C., de Oliveira, M.B., Ávila, A.S., Caldeira-de-Araújo, A., Cardoso, V.N., et al. 2000. Assessment of the effect of Maytenus ilicifolia (espinheira santa) extract on the labeling of red blood cells and plasma proteins with technetium-99m. J. Ethnopharmacol. 72(1-2): 179-184. doi:10.1016/S0378-8741(00)00240-3. PMID:10967470.
11. Excoffier, L., Laval, G., and Schneider, S. 2005. Arlequin (version 3.0): An integrated software package for population genetics data analysis. Evol. Bioinform. Online, 1: 47-50. PMID: 19325852.
12. Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39(4): 783-791. doi:10.2307/2408678.
13. Gao, X.-X., Zhou, H., Xu, D.-Y., Yu, C.-H., Chen, Y.-Q., and Qu, L.-H. 2005. High diversity of endophytic fungi from the pharmaceutical plant, Heterosmilax japonica Kunth revealed by cultivation-independent approach. FEMS Microbiol. Lett. 249(2): 255-266. doi:10.1016/j.femsle.2005.06.017. PMID:16000243.
14. Glienke-Blanco, C., Aguilar-Vildoso, C.I., Vieira, M.L.C., Barroso, P.A.V., and Azevedo, J.L. 2002. Genetic variability in the endophytic fungus Guignardia citricarpa isolated from citrus plants. Genet. Mol. Biol. 25(2): 251-255. doi:10.1590/S1415-47572002000200021.
15. Gomes-Figueiredo, J., Pimentel, I.C., Vicente, V.A., Pie, M.R., Kava-Cordeiro, V., Galli-Terasawa, L., et al. 2007. Bioprospecting highly diverse endophytic Pestalotiopsis spp. with antibacterial properties from Maytenus ilicifolia, a medicinal plant from Brazil. Can. J. Microbiol. 53: 1123-1132. doi:10.1139/W07-078. PMID:18026204.
16. Gonzalez, F.G., Portela, T.Y., Stipp, E.J., and Di Stasi, L.C. 2001. Antiulcerogenic and analgesic effects of Maytenus aquifolium, Sorocea bomplandii, and Zolernia ilicifolia. J. Ethnopharmacol. 77(1): 41-47. doi:10.1016/S0378-8741(01)00268-9. PMID: 11483377.
17. Guarro, J., Svidzinski, T.E., Zaror, L., Forjaz, M.H., Gené, J., and Fischman, O. 1998. Subcutaneous hyalohyphomycosis caused by Colletotrichum gloeosporioides. J. Clin. Microbiol. 36(10): 3060-3065. PMID:9738070.
18. Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41: 95-98.
19. Inácio, M.L., Silva, G.H., Teles, H.L., Trevisan, H.C., Cavalheiro, A.J., Bolzani, V.S., et al. 2006. Antifungal metabolites from Colletotrichum gloeosporioides, an endophytic fungus in Cryptocarya mandioccana Nees (Lauraceae). Biochem. Syst. Ecol. 34(11): 822-824. doi:10.1016/j.bse.2006. 06.007.
20. Jorge, R.M., Leite, J.P.V., Oliveira, A.B., and Tagliati, C.A. 2004. Evaluation of antinociceptive, anti-inflammatory, and antiulcerogenic activities of Maytenus ilicifolia. J. Ethnopharmacol. 94(1): 93-100. doi:10.1016/j.jep. 2004.04.019. PMID:15261968.
21. Kern, M.E., and Blevins, K.S. 1999. Micologia médica. Editora Premier, S.P.
22. Lee, H.B., Park, J.Y., and Jung, H.S. 2005. First report of leaf anthracnose caused by Colletotrichum boninense on spindle trees. Plant Pathol. 54(2): 254. doi:10.1111/j.1365-3059.2005.01130.x.
23. Leite, J.P.V., Rastrelli, L., Romussi, G., Oliveira, A.B., Vilegas, J.H.Y., Vilegas, W., and Pizza, C. 2001. Isolation and HPLC quantitative analysis of flavonoid glycosides from Brazilian beverages (Maytenus ilicifolia and M. aquifolium). J. Agric. Food Chem. 49(8): 3796-3801. doi:10.1021/ jf010294n. PMID:11513669.
24. Lu, H., Zou, W.X., Meng, J.C., Hu, J., and Tan, R.X. 2000. New bioactive metabolites produced by Colletotrichum sp., an endophytic fungus in Artemisia annua. Plant Sci. 151(1): 67-73. doi:10.1016/S0168-9452(99)00199-5.
25. Lu, G.Z., Cannon, P.F., Reid, A., and Simmons, C.M. 2004. Diversity and molecular relationships of endophytic Colletotrichum isolates from the Iwokrama Forest Reserve, Guyana. Mycol. Res. 108(Pt 1): 53-63. doi:10.1017/ S0953756203008906. PMID:15035505.
26. Lubbe, C.M., Denman, S., Cannon, P.F., Groenewald, J.Z., Lamprecht, S.C., and Crous, P.W. 2004. Characterization of Colletotrichum species associated with diseases of Proteaceae. Mycologia, 96(6): 1268-1279. doi:10.2307/3762144.
27. Mantel, N. 1967. The detection of disease clustering and a generalized regression approach. Cancer Res. 27(2): 209-220. PMID: 6018555.
28. Moriwaki, J., Sato, T., and Tsukiboshi, T. 2003. Morphological and molecular characterization of Colletotrichum boninense sp. nov. from Japan. Mycoscience, 44(1): 47-53. doi:10.1007/s10267-002-0079-7.
29. Munaut, F., Hamaide, N., and Maraite, H. 2002. Genomic and pathogenic diversity in Colletotrichum gloeosporioides from wild native Mexican Stylosanthes spp., and taxonomic implications. Mycol. Res. 106(5): 579-593. doi:10.1017/S0953756202005932.
30. Orabi, K.Y., Al-Qasoumi, S.I., El-Olemy, M.M., Mossa, J.S., and Muhammad, I. 2001. Dihydroagarofuran alkaloid and triterpenes from Maytenus heterophylla and Maytenus arbutifolia. Phytochemistry, 58(3): 475-480. doi:10.1016/S0031- 9422(01)00277-1. PMID:11557080.
31. Page, R.D. 1996. TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12(4): 357-358. PMID:8902363.
32. Petrini, O. 1986. Taxonomy of endophytic fungi of aerial plant tissues. In Microbiology of the phyllosphere. Edited by N.J. Fokkema and J. van der Heuvel. Cambridge University Press, Cambridge, UK. pp. 175-187.
33. Petrini, O. 1991. Fungal endophytes of tree leaves. In Microbial ecology of leaves. Edited by J.H. Andrews and S.S. Hirano. Springer-Verlag, New York. pp. 179-197.
34. Queiroga, C.L., Silva, G.F., Dias, P.C., Possenti, A., and de Carvalho, J.E. 2000. Evaluation of the antiulcerogenic activity of friedelan-3b-ol and friedelin isolated from Maytenus ilicifolia (Celastraceae). J. Ethnopharmacol. 72(3): 465-468. doi:10.1016/S0378-8741(00)00237-3. PMID:10996287.
35. Raeder, U., and Broda, P. 1985. Rapid preparation of DNA from filamentous fungi. Lett. Appl. Microbiol. 1(1): 17-20. doi:10.1111/j.1472-765X.1985. tb01479.x.
36. Rohlf, F.J. 1998. NTSYS-pc: Numerical taxonomy and multivariate analysis system. Exeter Publishing, New York.
37. Silva, F.A.S., and Azevedo, C.A.V. 2002. Versão do programa computacional Assistat para o sistema operacional Windows. Rev. Bras. Produtos Agroindustriais, 4: 71-78.
38. Silva, F.A.S., and Azevedo, C.A.V. 2006. A new version of the Assistat-Statistical Assistance software. In Proceedings of the Fourth World Congress on Computers in Agriculture and Natural Resources, Orlando, Florida, 24-26 July 2006. Anais Orlando, American Society of Agricultural Engineers, pp. 393-396.
39. Sneath, P.H.A., and Sokal, R.R. 1973. Numerical taxonomy. W.H. Freeman and Company, London, UK.
40. Stamford, T.L., Stamford, N.P., Coelho, L.C., and Araújo, J.M. 2001. Production and characterization of a thermostable a-amylase from Nocardiopsis sp. endophyte of yam bean. Bioresour. Technol. 76(2): 137-141. doi:10.1016/S0960-8524(00)00089-4. PMID: 11131797.
41. Stamford, T.L.M., Stamford, N.P., Coelho, L.C.B.B., and Araújo, J.M. 2002. Production and characterization of a thermostable glucoamylase from Streptosporangium sp. endophyte of maize leaves. Bioresour. Technol. 83(2): 105-109. doi:10.1016/S0960-8524(01)00206-1. PMID:12056484.
42. Stierle, A., Strobel, G., Stierle, D., Grothaus, P., and Bignami, G. 1995. The search for a taxol-producing microorganism among the endophytic fungi of the Pacific yew, Taxus brevifolia. J. Nat. Prod. 58(9): 1315-1324. doi:10.1021/np50123a002. PMID: 7494141.
43. Strobel, G.A. 2003. Endophytes as sources of bioactive products. Microbes Infect. 5(6): 535-544. doi:10.1016/S1286-4579(03)00073-X. PMID:12758283.
44. Strobel, G.A., Daisy, B., Castillo, U., and Harper, J. 2004. Natural products from endophytic microorganisms. J. Nat. Prod. 67(2): 257-268. doi:10.1021/np030397v. PMID:14987067.
45. Suto, M., Takebayashi, M., Saito, K., Tanaka, M., Yokota, A., and Tomita, F. 2002. Endophytes as producers of xylanase. J. Biosci. Bioeng. 93(1): 88-90. PMID:16233170.
46. Swofford, D.L. 2001. PAUP*: Phylogenetic analysis using parsimony. Version 4.05b [computer program]. Sinauer Associates, Sunderland, Massachusetts.
47. Thompson, J.D., Higgins, D.G., and Gibson, T.J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties, and weight matrix choice. Nucleic Acids Res. 22(22): 4673-4680. doi:10.1093/nar/22.22.4673. PMID:7984417.
48. Wang, J., Li, G., Lu, H., Zheng, Z., Huang, Y., and Su, W. 2000. Taxol from Tubercularia sp. strain TF5, an endophytic fungus of Taxus mairei. FEMS Microbiol. Lett. 193(2): 249-253. doi:10.1111/j.1574-6968.2000.tb09432.x. PMID:11111032.
49. White, T.J., Bruns, T.D., Lee, S., and Taylor, J.W. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR protocols: a guide to methods and applications. Edited by M.A. Innis, D.H. Gelfand, J.J. Sninsky, and T.J. White. Academic Press, New York. pp. 315-322.
50. Zhang, H.W., Song, Y.C., and Tan, R.X. 2006. Biology and chemistry of endophytes. Nat. Prod. Rep. 23(5): 753-771. doi:10.1039/b609472b. PMID:17003908.
51. Zhao, P.J., Fan, L.M., Li, G.H., Zhu, N., and Shen, Y.M. 2005. Antibacterial and antitumor macrolides from Streptomyces sp. Is9131. Arch. Pharm. Res. 28(11): 1228-1232. doi:10.1007/BF02978203. PMID:16350846.
52. Zou, W.X., Meng, J.C., Lu, H., Chen, G.X., Shi, G.X., Zhang, T.Y., and Tan, R.X. 2000. Metabolites of Colletotrichum gloeosporioides, an endophytic fungus in Artemisia mongolica. J. Nat. Prod. 63(11): 1529-1530. doi:10.1021/np000204t. PMID: 11087599.