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Volumn 114, Issue 3, 2013, Pages 828-835

Species-specific real-time PCR detection of Colletotrichum kahawae

Author keywords

Coffea arabica; Coffee berry disease; Colletotrichum gloeosporioides; Molecular diagnosis; Plant disease; The glyceraldehyde 3 phosphate dehydrogenase gene

Indexed keywords

DIAGNOSIS; DNA; FRUITS; MOLECULAR BIOLOGY; POLYMERASE CHAIN REACTION; PROTEINS;

EID: 84873995148     PISSN: 13645072     EISSN: 13652672     Source Type: Journal    
DOI: 10.1111/jam.12068     Document Type: Article
Times cited : (23)

References (43)
  • 1
    • 0003155106 scopus 로고
    • A revision of the fungi classified as Gloeosporium
    • von Arx, J.A. (1970) A revision of the fungi classified as Gloeosporium. Bibliotheca Mycologica 24, 1-203.
    • (1970) Bibliotheca Mycologica , vol.24 , pp. 1-203
    • von Arx, J.A.1
  • 3
    • 80755152397 scopus 로고    scopus 로고
    • The evolution of species concepts and species recognition criteria in plant pathogenic fungi
    • Cai, L., Giraud, T., Zhang, N., Begerow, D., Cai, G.H. and Shivas, R.G. (2011) The evolution of species concepts and species recognition criteria in plant pathogenic fungi. Fungal Divers 50, 121-133.
    • (2011) Fungal Divers , vol.50 , pp. 121-133
    • Cai, L.1    Giraud, T.2    Zhang, N.3    Begerow, D.4    Cai, G.H.5    Shivas, R.G.6
  • 4
    • 70349572496 scopus 로고    scopus 로고
    • What is the value of ITS sequence data in Colletotrichum systematics and species diagnosis? A case study using the falcate-spored graminicolous Colletotrichum group
    • Crouch, J., Clarke, B. and Hillman, B. (2009) What is the value of ITS sequence data in Colletotrichum systematics and species diagnosis? A case study using the falcate-spored graminicolous Colletotrichum group. Mycologia 101, 648-656.
    • (2009) Mycologia , vol.101 , pp. 648-656
    • Crouch, J.1    Clarke, B.2    Hillman, B.3
  • 5
    • 77953246969 scopus 로고    scopus 로고
    • Colletotrichum species with curved conidia from herbaceous hosts
    • Damm, U., Woudenberg, J.H.C., Cannon, P.F. and Crous, P.W. (2009) Colletotrichum species with curved conidia from herbaceous hosts. Fungal Divers 39, 45-87.
    • (2009) Fungal Divers , vol.39 , pp. 45-87
    • Damm, U.1    Woudenberg, J.H.C.2    Cannon, P.F.3    Crous, P.W.4
  • 7
    • 1842306309 scopus 로고
    • Inoculum sources for coffee berry disease
    • Gibbs, J.N. (1969) Inoculum sources for coffee berry disease. Ann Appl Biol 64, 515-522.
    • (1969) Ann Appl Biol , vol.64 , pp. 515-522
    • Gibbs, J.N.1
  • 8
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 13
    • 0030906191 scopus 로고    scopus 로고
    • Relationships among Colletotrichum isolates from fruit-rots assessed using rDNA sequences
    • Johnston, P. and Jones, D. (1997) Relationships among Colletotrichum isolates from fruit-rots assessed using rDNA sequences. Mycologia 89, 420-430.
    • (1997) Mycologia , vol.89 , pp. 420-430
    • Johnston, P.1    Jones, D.2
  • 14
    • 79952292290 scopus 로고    scopus 로고
    • Rapid detection of Colletotrichum lagenarium, causal agent of anthracnose of cucurbitaceous crops, by PCR and real-time PCR
    • Kuan, C.P., Wu, M.T., Huang, H.C. and Chang, H. (2011) Rapid detection of Colletotrichum lagenarium, causal agent of anthracnose of cucurbitaceous crops, by PCR and real-time PCR. J Phytopathol 159, 276-282.
    • (2011) J Phytopathol , vol.159 , pp. 276-282
    • Kuan, C.P.1    Wu, M.T.2    Huang, H.C.3    Chang, H.4
  • 17
    • 84873993632 scopus 로고    scopus 로고
    • Ministry of Agriculture of the People's Republic of China, Beijing: Ministry of Agriculture of the People's Republic of China.
    • Ministry of Agriculture of the People's Republic of China (2007) People's Republic of China Imported Plant Quarantine Pest List. Beijing: Ministry of Agriculture of the People's Republic of China.
    • (2007) People's Republic of China Imported Plant Quarantine Pest List
  • 18
    • 0036521256 scopus 로고    scopus 로고
    • Identification and characterization of Colletotrichum spp. affecting fruit after harvest in Brazil
    • Natalia, A.R.P., Eiko, E.K., Mario, S.C.D. and Niltonl, D.S. (2002) Identification and characterization of Colletotrichum spp. affecting fruit after harvest in Brazil. Phytopathology 150, 128-134.
    • (2002) Phytopathology , vol.150 , pp. 128-134
    • Natalia, A.R.P.1    Eiko, E.K.2    Mario, S.C.D.3    Niltonl, D.S.4
  • 20
    • 45749142504 scopus 로고    scopus 로고
    • Intraspecific ITS variability in the kingdom fungi as expressed in the international sequences databases and its implications for molecular species identification
    • Nilsson, R.H., Kristiansson, E., Ryberg, M., Hallenberg, N. and Larsson, K.-H. (2008) Intraspecific ITS variability in the kingdom fungi as expressed in the international sequences databases and its implications for molecular species identification. Evol Bioinform 4, 193-201.
    • (2008) Evol Bioinform , vol.4 , pp. 193-201
    • Nilsson, R.H.1    Kristiansson, E.2    Ryberg, M.3    Hallenberg, N.4    Larsson, K.-H.5
  • 21
    • 0001690351 scopus 로고
    • Investigations on a disease of Coffea arabica caused by a form of Colletotrichum coffeanum Noack. II. some factors affecting germination and infection by the pathogen
    • Nutman, F. and Roberts, F. (1960) Investigations on a disease of Coffea arabica caused by a form of Colletotrichum coffeanum Noack. II. some factors affecting germination and infection by the pathogen. Trans Br Mycol Soc 43, 643-659.
    • (1960) Trans Br Mycol Soc , vol.43 , pp. 643-659
    • Nutman, F.1    Roberts, F.2
  • 23
    • 79952408551 scopus 로고    scopus 로고
    • A new species of Colletotrichum from Cordyline fruticosa and Eugenia javanica causing anthracnose disease
    • Phoulivong, S., Cai, L., Parinn, N., Chen, H., Abd-Elsalam, K.A., Chukeatirote, E. and Hyde, K.D. (2010b) A new species of Colletotrichum from Cordyline fruticosa and Eugenia javanica causing anthracnose disease. Mycontaxon 114, 247-257.
    • (2010) Mycontaxon , vol.114 , pp. 247-257
    • Phoulivong, S.1    Cai, L.2    Parinn, N.3    Chen, H.4    Abd-Elsalam, K.A.5    Chukeatirote, E.6    Hyde, K.D.7
  • 24
    • 77956506743 scopus 로고    scopus 로고
    • Characterization of Colletotrichum species associated with coffee berries in Chiang Mai, Thailand
    • Prihastuti, H., Cai, L., Chen, H. and Hyde, K.D. (2009) Characterization of Colletotrichum species associated with coffee berries in Chiang Mai, Thailand. Fungal Divers 39, 89-109.
    • (2009) Fungal Divers , vol.39 , pp. 89-109
    • Prihastuti, H.1    Cai, L.2    Chen, H.3    Hyde, K.D.4
  • 25
    • 78049257814 scopus 로고    scopus 로고
    • Colletotrichum gloeosporioides s.l. associated with Theobroma cacao and other plants in Panamá: multilocus phylogenies distinguish host-associated pathogens from asymptomatic endophytes
    • Rojas, E.I., Rehner, S.A., Samuels, G.J., Van Bael, S.A., Herre, E.A., Cannon, P., Chen, R., Pang, J.F. etal. (2010) Colletotrichum gloeosporioides s.l. associated with Theobroma cacao and other plants in Panamá: multilocus phylogenies distinguish host-associated pathogens from asymptomatic endophytes. Mycologia 102, 1318-1338.
    • (2010) Mycologia , vol.102 , pp. 1318-1338
    • Rojas, E.I.1    Rehner, S.A.2    Samuels, G.J.3    Van Bael, S.A.4    Herre, E.A.5    Cannon, P.6    Chen, R.7    Pang, J.F.8
  • 26
    • 0032721875 scopus 로고    scopus 로고
    • Detection of Clavibacter michiganensis subsp sepedonicus in potato tubers by BIO-PCR and an automated real-time fluorescence detection system
    • Schaad, N.W., Berthier-Schaad, Y., Sechler, A. and Knorr, D. (1999) Detection of Clavibacter michiganensis subsp sepedonicus in potato tubers by BIO-PCR and an automated real-time fluorescence detection system. Plant Dis 83, 1095-1100.
    • (1999) Plant Dis , vol.83 , pp. 1095-1100
    • Schaad, N.W.1    Berthier-Schaad, Y.2    Sechler, A.3    Knorr, D.4
  • 27
    • 84859972408 scopus 로고    scopus 로고
    • Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
    • Fungal Barcoding Consortium
    • Schoch, C.L., Seifert, K.A., Huhndorf, S., Robert, V., Spouge, J.L., Levesque, C.A., Chen, W. and Fungal Barcoding Consortium (2012) Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proc Natl Acad Sci USA 109, 6241-6246.
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 6241-6246
    • Schoch, C.L.1    Seifert, K.A.2    Huhndorf, S.3    Robert, V.4    Spouge, J.L.5    Levesque, C.A.6    Chen, W.7
  • 28
    • 84920427838 scopus 로고    scopus 로고
    • A taxonomic re-assessment of Colletotrichum acutatum, introducing C. fioriniae comb. et stat. nov. and C. simmondsii sp. nov
    • Shivas, R.G. and Tan, Y.P. (2009) A taxonomic re-assessment of Colletotrichum acutatum, introducing C. fioriniae comb. et stat. nov. and C. simmondsii sp. nov. Fungal Divers 39, 111-122.
    • (2009) Fungal Divers , vol.39 , pp. 111-122
    • Shivas, R.G.1    Tan, Y.P.2
  • 29
    • 40749088145 scopus 로고    scopus 로고
    • TaxonGap: a visualisation tool for intra- and inter-species variation among individual biomarkers
    • Slabbinck, B., Dawyndt, P., Martens, M., De Vos, P. and De Baets, B. (2008) TaxonGap: a visualisation tool for intra- and inter-species variation among individual biomarkers. Bioinformatics 24, 866-867.
    • (2008) Bioinformatics , vol.24 , pp. 866-867
    • Slabbinck, B.1    Dawyndt, P.2    Martens, M.3    De Vos, P.4    De Baets, B.5
  • 30
    • 85008420930 scopus 로고
    • Coffee berry disease pathogen in Africa: genetic structure and relationship to the group species Colletotrichum gloeosporioides
    • Sreenivasaprasad, S., Brown, A. and Mills, P. (1993) Coffee berry disease pathogen in Africa: genetic structure and relationship to the group species Colletotrichum gloeosporioides. Mycol Res 87, 995-1000.
    • (1993) Mycol Res , vol.87 , pp. 995-1000
    • Sreenivasaprasad, S.1    Brown, A.2    Mills, P.3
  • 31
    • 0030514504 scopus 로고    scopus 로고
    • PCR-based detection of Colletotrichum acutatum on strawberry
    • Sreenivasprasad, S., Sharand, K., Brown, A.E. and Milis, P.R. (1996) PCR-based detection of Colletotrichum acutatum on strawberry. Plant Pathol 45, 650-655.
    • (1996) Plant Pathol , vol.45 , pp. 650-655
    • Sreenivasprasad, S.1    Sharand, K.2    Brown, A.E.3    Milis, P.R.4
  • 34
    • 0003570282 scopus 로고
    • Kew, Surrey, UK: Commonwealth Mycological Institute.
    • Sutton, B.C. (1980) The Coelomycetes. pp. 523-537. Kew, Surrey, UK: Commonwealth Mycological Institute.
    • (1980) The Coelomycetes , pp. 523-537
    • Sutton, B.C.1
  • 36
    • 0027968068 scopus 로고
    • Clustal W: improving the sensitivity of progressive multiple sequence alignments through sequence weighting, position specific gap penalties and weight matrix choice
    • Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) Clustal W: improving the sensitivity of progressive multiple sequence alignments through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 37
    • 84985624702 scopus 로고
    • Characterization of the coffee berry disease pathogen, Colletotrichum kahawae sp. nov
    • Waller, J.M., Bridge, P.D., Black, R. and Hakiza, G. (1993) Characterization of the coffee berry disease pathogen, Colletotrichum kahawae sp. nov. Mycol Res 97, 989-994.
    • (1993) Mycol Res , vol.97 , pp. 989-994
    • Waller, J.M.1    Bridge, P.D.2    Black, R.3    Hakiza, G.4
  • 40
    • 79953314446 scopus 로고    scopus 로고
    • Real-time PCR assay based on topoisomerase-II gene for detection of Fusarium udum
    • Yadav, M.K., Babu, B.K., Saxena, A.K., Singh, B.P., Singh, K. and Arora, D.K. (2011) Real-time PCR assay based on topoisomerase-II gene for detection of Fusarium udum. Mycopathologia 171, 373-381.
    • (2011) Mycopathologia , vol.171 , pp. 373-381
    • Yadav, M.K.1    Babu, B.K.2    Saxena, A.K.3    Singh, B.P.4    Singh, K.5    Arora, D.K.6
  • 42
    • 80055096032 scopus 로고    scopus 로고
    • Colletotrichum species on Orchidaceae in southwest China
    • Yang, Y.L., Cai, L., Yu, Z., Liu, Z.Y. and Hyde, K.D. (2011) Colletotrichum species on Orchidaceae in southwest China. Cryptogamie Mycol 32, 229-253.
    • (2011) Cryptogamie Mycol , vol.32 , pp. 229-253
    • Yang, Y.L.1    Cai, L.2    Yu, Z.3    Liu, Z.Y.4    Hyde, K.D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.