-
1
-
-
84865529072
-
Targeting iron assimilation to develop new antibacterials
-
Foley, T. L. and Simeonov, A. (2012) Targeting iron assimilation to develop new antibacterials Expert Opin. Drug Discovery 7, 831-847
-
(2012)
Expert Opin. Drug Discovery
, vol.7
, pp. 831-847
-
-
Foley, T.L.1
Simeonov, A.2
-
2
-
-
78651394745
-
Macromolecular inhibition of quorum sensing: Enzymes, antibodies, and beyond
-
Amara, N., Krom, B. P., Kaufmann, G. F., and Meijler, M. M. (2011) Macromolecular inhibition of quorum sensing: enzymes, antibodies, and beyond Chem. Rev. 111, 195-208
-
(2011)
Chem. Rev.
, vol.111
, pp. 195-208
-
-
Amara, N.1
Krom, B.P.2
Kaufmann, G.F.3
Meijler, M.M.4
-
3
-
-
0034495297
-
Structural comparison of Ntn-hydrolases
-
Oinonen, C. and Rouvinen, J. (2000) Structural comparison of Ntn-hydrolases Protein Sci. 9, 2329-2337
-
(2000)
Protein Sci.
, vol.9
, pp. 2329-2337
-
-
Oinonen, C.1
Rouvinen, J.2
-
4
-
-
0142040878
-
Utilization of acyl-homoserine lactone quorum signals for growth by a soil pseudomonad and Pseudomonas aeruginosa PAO1
-
Huang, J. J., Han, J. I., Zhang, L. H., and Leadbetter, J. R. (2003) Utilization of acyl-homoserine lactone quorum signals for growth by a soil pseudomonad and Pseudomonas aeruginosa PAO1 Appl. Environ. Microbiol. 69, 5941-5949
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 5941-5949
-
-
Huang, J.J.1
Han, J.I.2
Zhang, L.H.3
Leadbetter, J.R.4
-
5
-
-
0038076005
-
Identification and characterization of novel pyoverdine synthesis genes in Pseudomonas aeruginosa
-
Lamont, I. L. and Martin, L. W. (2003) Identification and characterization of novel pyoverdine synthesis genes in Pseudomonas aeruginosa Microbiology 149, 833-842
-
(2003)
Microbiology
, vol.149
, pp. 833-842
-
-
Lamont, I.L.1
Martin, L.W.2
-
6
-
-
77955890343
-
Synthesis of the siderophore pyoverdine in Pseudomonas aeruginosa involves a periplasmic maturation
-
Yeterian, E., Martin, L. W., Guillon, L., Journet, L., Lamont, I. L., and Schalk, I. J. (2010) Synthesis of the siderophore pyoverdine in Pseudomonas aeruginosa involves a periplasmic maturation Amino Acids 38, 1447-1459
-
(2010)
Amino Acids
, vol.38
, pp. 1447-1459
-
-
Yeterian, E.1
Martin, L.W.2
Guillon, L.3
Journet, L.4
Lamont, I.L.5
Schalk, I.J.6
-
7
-
-
84655163497
-
Biosynthesis of the pyoverdine siderophore of Pseudomonas aeruginosa involves precursors with a myristic or a myristoleic acid chain
-
Hannauer, M., Schafer, M., Hoegy, F., Gizzi, P., Wehrung, P., Mislin, G. L., Budzikiewicz, H., and Schalk, I. J. (2012) Biosynthesis of the pyoverdine siderophore of Pseudomonas aeruginosa involves precursors with a myristic or a myristoleic acid chain FEBS Lett. 586, 96-101
-
(2012)
FEBS Lett.
, vol.586
, pp. 96-101
-
-
Hannauer, M.1
Schafer, M.2
Hoegy, F.3
Gizzi, P.4
Wehrung, P.5
Mislin, G.L.6
Budzikiewicz, H.7
Schalk, I.J.8
-
8
-
-
76249128454
-
The quorum-quenching N -acyl homoserine lactone acylase PvdQ is an Ntn-hydrolase with an unusual substrate-binding pocket
-
Bokhove, M., Nadal Jimenez, P., Quax, W. J., and Dijkstra, B. W. (2010) The quorum-quenching N -acyl homoserine lactone acylase PvdQ is an Ntn-hydrolase with an unusual substrate-binding pocket Proc. Natl. Acad. Sci. U. S. A. 107, 686-691
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 686-691
-
-
Bokhove, M.1
Nadal Jimenez, P.2
Quax, W.J.3
Dijkstra, B.W.4
-
9
-
-
81555196347
-
Structural characterization and high-throughput screening of inhibitors of PvdQ, an NTN hydrolase involved in pyoverdine synthesis
-
Drake, E. J. and Gulick, A. M. (2011) Structural characterization and high-throughput screening of inhibitors of PvdQ, an NTN hydrolase involved in pyoverdine synthesis ACS Chem. Biol. 6, 1277-1286
-
(2011)
ACS Chem. Biol.
, vol.6
, pp. 1277-1286
-
-
Drake, E.J.1
Gulick, A.M.2
-
10
-
-
84886572862
-
Rational design of a transition state analogue with picomolar affinity for Pseudomonas aeruginosa PvdQ, a siderophore biosynthetic enzyme
-
Clevenger, K. D., Wu, R., Er, J. A., Liu, D., and Fast, W. (2013) Rational design of a transition state analogue with picomolar affinity for Pseudomonas aeruginosa PvdQ, a siderophore biosynthetic enzyme ACS Chem. Biol. 8, 2192-2200
-
(2013)
ACS Chem. Biol.
, vol.8
, pp. 2192-2200
-
-
Clevenger, K.D.1
Wu, R.2
Er, J.A.3
Liu, D.4
Fast, W.5
-
11
-
-
76849108830
-
Role of PvdQ in Pseudomonas aeruginosa virulence under iron-limiting conditions
-
Nadal Jimenez, P., Koch, G., Papaioannou, E., Wahjudi, M., Krzeslak, J., Coenye, T., Cool, R. H., and Quax, W. J. (2010) Role of PvdQ in Pseudomonas aeruginosa virulence under iron-limiting conditions Microbiology 156, 49-59
-
(2010)
Microbiology
, vol.156
, pp. 49-59
-
-
Nadal Jimenez, P.1
Koch, G.2
Papaioannou, E.3
Wahjudi, M.4
Krzeslak, J.5
Coenye, T.6
Cool, R.H.7
Quax, W.J.8
-
12
-
-
0030033830
-
Pyoverdin is essential for virulence of Pseudomonas aeruginosa
-
Meyer, J. M., Neely, A., Stintzi, A., Georges, C., and Holder, I. A. (1996) Pyoverdin is essential for virulence of Pseudomonas aeruginosa Infect. Immun. 64, 518-523
-
(1996)
Infect. Immun.
, vol.64
, pp. 518-523
-
-
Meyer, J.M.1
Neely, A.2
Stintzi, A.3
Georges, C.4
Holder, I.A.5
-
13
-
-
0034283735
-
Genomics of the 35-kb pvd locus and analysis of novel pvd IJK genes implicated in pyoverdine biosynthesis in Pseudomonas aeruginosa
-
Lehoux, D. E., Sanschagrin, F., and Levesque, R. C. (2000) Genomics of the 35-kb pvd locus and analysis of novel pvd IJK genes implicated in pyoverdine biosynthesis in Pseudomonas aeruginosa FEMS Microbiol Lett. 190, 141-146
-
(2000)
FEMS Microbiol Lett.
, vol.190
, pp. 141-146
-
-
Lehoux, D.E.1
Sanschagrin, F.2
Levesque, R.C.3
-
14
-
-
84904541042
-
Identification of Inhibitors of PvdQ, an Enzyme Involved in the Synthesis of the Siderophore Pyoverdine
-
Wurst, J. M., Drake, E. J., Theriault, J. R., Jewett, I. T., VerPlank, L., Perez, J. R., Dandapani, S., Palmer, M., Moskowitz, S. M., Schreiber, S. L., Munoz, B., and Gulick, A. M. (2014) Identification of Inhibitors of PvdQ, an Enzyme Involved in the Synthesis of the Siderophore Pyoverdine ACS Chem. Biol. 9, 1536-1544
-
(2014)
ACS Chem. Biol.
, vol.9
, pp. 1536-1544
-
-
Wurst, J.M.1
Drake, E.J.2
Theriault, J.R.3
Jewett, I.T.4
Verplank, L.5
Perez, J.R.6
Dandapani, S.7
Palmer, M.8
Moskowitz, S.M.9
Schreiber, S.L.10
Munoz, B.11
Gulick, A.M.12
-
15
-
-
70350321272
-
Quorum-quenching acylase reduces the virulence of Pseudomonas aeruginosa in a Caenorhabditis elegans infection model
-
Papaioannou, E., Wahjudi, M., Nadal-Jimenez, P., Koch, G., Setroikromo, R., and Quax, W. J. (2009) Quorum-quenching acylase reduces the virulence of Pseudomonas aeruginosa in a Caenorhabditis elegans infection model Antimicrob. Agents Chemother. 53, 4891-4897
-
(2009)
Antimicrob. Agents Chemother.
, vol.53
, pp. 4891-4897
-
-
Papaioannou, E.1
Wahjudi, M.2
Nadal-Jimenez, P.3
Koch, G.4
Setroikromo, R.5
Quax, W.J.6
-
16
-
-
84873449341
-
Development of a dry, stable and inhalable acyl-homoserine-lactone-acylase powder formulation for the treatment of pulmonary Pseudomonas aeruginosa infections
-
Wahjudi, M., Murugappan, S., van Merkerk, R., Eissens, A. C., Visser, M. R., Hinrichs, W. L., and Quax, W. J. (2013) Development of a dry, stable and inhalable acyl-homoserine-lactone-acylase powder formulation for the treatment of pulmonary Pseudomonas aeruginosa infections Eur. J. Pharm. Sci. 48, 637-643
-
(2013)
Eur. J. Pharm. Sci.
, vol.48
, pp. 637-643
-
-
Wahjudi, M.1
Murugappan, S.2
Van Merkerk, R.3
Eissens, A.C.4
Visser, M.R.5
Hinrichs, W.L.6
Quax, W.J.7
-
17
-
-
84893403769
-
Reducing virulence of the human pathogen Burkholderia by altering the substrate specificity of the quorum-quenching acylase PvdQ
-
Koch, G., Nadal-Jimenez, P., Reis, C. R., Muntendam, R., Bokhove, M., Melillo, E., Dijkstra, B. W., Cool, R. H., and Quax, W. J. (2014) Reducing virulence of the human pathogen Burkholderia by altering the substrate specificity of the quorum-quenching acylase PvdQ Proc. Natl. Acad. Sci. U. S. A. 111, 1568-1573
-
(2014)
Proc. Natl. Acad. Sci. U. S. A.
, vol.111
, pp. 1568-1573
-
-
Koch, G.1
Nadal-Jimenez, P.2
Reis, C.R.3
Muntendam, R.4
Bokhove, M.5
Melillo, E.6
Dijkstra, B.W.7
Cool, R.H.8
Quax, W.J.9
-
18
-
-
77953631827
-
A medicinal chemist's guide to molecular interactions
-
Bissantz, C., Kuhn, B., and Stahl, M. (2010) A medicinal chemist's guide to molecular interactions J. Med. Chem. 53, 5061-5084
-
(2010)
J. Med. Chem.
, vol.53
, pp. 5061-5084
-
-
Bissantz, C.1
Kuhn, B.2
Stahl, M.3
-
19
-
-
52049123291
-
Do enthalpy and entropy distinguish first in class from best in class?
-
Freire, E. (2008) Do enthalpy and entropy distinguish first in class from best in class? Drug Discovery Today 13, 869-874
-
(2008)
Drug Discovery Today
, vol.13
, pp. 869-874
-
-
Freire, E.1
-
20
-
-
80052512455
-
Label-free critical micelle concentration determination of bacterial quorum sensing molecules
-
Davis, B. M., Richens, J. L., and O'Shea, P. (2011) Label-free critical micelle concentration determination of bacterial quorum sensing molecules Biophys. J. 101, 245-254
-
(2011)
Biophys. J.
, vol.101
, pp. 245-254
-
-
Davis, B.M.1
Richens, J.L.2
O'Shea, P.3
-
21
-
-
0015505927
-
The critical micelle concentration of L-α- dipalmitoylphosphatidylcholine in water and water-methanol solutions
-
Smith, R. and Tanford, C. (1972) The critical micelle concentration of L-α- dipalmitoylphosphatidylcholine in water and water-methanol solutions J. Mol. Biol. 67, 75-83
-
(1972)
J. Mol. Biol.
, vol.67
, pp. 75-83
-
-
Smith, R.1
Tanford, C.2
-
22
-
-
23944514165
-
-
pp, Wiley-Interscience, Hoboken, NJ.
-
Copeland, R. A. (2005) Evaluation of Enzyme Inhibitors in Drug Discovery, pp 117-121, Wiley-Interscience, Hoboken, NJ.
-
(2005)
Evaluation of Enzyme Inhibitors in Drug Discovery
, pp. 117-121
-
-
Copeland, R.A.1
-
24
-
-
0031059866
-
Processing of X-ray Diffraction Data Collected in Oscillation Mode
-
Otwinowski, Z. and Minor, W. (1997) Processing of X-ray Diffraction Data Collected in Oscillation Mode Methods Enzymol. 276, 307-326
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
25
-
-
79953737180
-
Overview of the CCP4 suite and current developments
-
Winn, M. D., Ballard, C. C., Cowtan, K. D., Dodson, E. J., Emsley, P., Evans, P. R., Keegan, R. M., Krissinel, E. B., Leslie, A. G., McCoy, A., McNicholas, S. J., Murshudov, G. N., Pannu, N. S., Potterton, E. A., Powell, H. R., Read, R. J., Vagin, A., and Wilson, K. S. (2011) Overview of the CCP4 suite and current developments Acta Crystallogr. D Biol. Crystallogr. 67, 235-242
-
(2011)
Acta Crystallogr. D Biol. Crystallogr.
, vol.67
, pp. 235-242
-
-
Winn, M.D.1
Ballard, C.C.2
Cowtan, K.D.3
Dodson, E.J.4
Emsley, P.5
Evans, P.R.6
Keegan, R.M.7
Krissinel, E.B.8
Leslie, A.G.9
McCoy, A.10
McNicholas, S.J.11
Murshudov, G.N.12
Pannu, N.S.13
Potterton, E.A.14
Powell, H.R.15
Read, R.J.16
Vagin, A.17
Wilson, K.S.18
-
26
-
-
77949535720
-
Features and development of Coot
-
Emsley, P., Lohkamp, B., Scott, W. G., and Cowtan, K. (2010) Features and development of Coot Acta Crystallogr. D Biol. Crystallogr. 66, 486-501
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
27
-
-
84860290638
-
JLigand: A graphical tool for the CCP4 template-restraint library
-
Lebedev, A. A., Young, P., Isupov, M. N., Moroz, O. V., Vagin, A. A., and Murshudov, G. N. (2012) JLigand: a graphical tool for the CCP4 template-restraint library Acta Crystallogr. D Biol. Crystallogr. 68, 431-440
-
(2012)
Acta Crystallogr. D Biol. Crystallogr.
, vol.68
, pp. 431-440
-
-
Lebedev, A.A.1
Young, P.2
Isupov, M.N.3
Moroz, O.V.4
Vagin, A.A.5
Murshudov, G.N.6
-
28
-
-
14244272868
-
PHENIX: Building new software for automated crystallographic structure determination
-
Adams, P. D., Grosse-Kunstleve, R. W., Hung, L. W., Ioerger, T. R., McCoy, A. J., Moriarty, N. W., Read, R. J., Sacchettini, J. C., Sauter, N. K., and Terwilliger, T. C. (2002) PHENIX: building new software for automated crystallographic structure determination Acta Crystallogr. D Biol. Crystallogr. 58, 1948-1954
-
(2002)
Acta Crystallogr. D Biol. Crystallogr.
, vol.58
, pp. 1948-1954
-
-
Adams, P.D.1
Grosse-Kunstleve, R.W.2
Hung, L.W.3
Ioerger, T.R.4
McCoy, A.J.5
Moriarty, N.W.6
Read, R.J.7
Sacchettini, J.C.8
Sauter, N.K.9
Terwilliger, T.C.10
-
29
-
-
4444221565
-
UCSF Chimera - A visualization system for exploratory research and analysis
-
Pettersen, E. F., Goddard, T. D., Huang, C. C., Couch, G. S., Greenblatt, D. M., Meng, E. C., and Ferrin, T. E. (2004) UCSF Chimera - a visualization system for exploratory research and analysis J. Comput. Chem. 25, 1605-1612
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
30
-
-
0014799161
-
Alpha-chymotrypsin: A case study of substituent constants and regression analysis in enzymic structure - Activity relationships
-
Hansch, C. and Coats, E. (1970) Alpha-chymotrypsin: a case study of substituent constants and regression analysis in enzymic structure - activity relationships J. Pharm. Sci. 59, 731-743
-
(1970)
J. Pharm. Sci.
, vol.59
, pp. 731-743
-
-
Hansch, C.1
Coats, E.2
-
32
-
-
0026777217
-
Contribution of the hydrophobic effect to globular protein stability
-
Pace, C. N. (1992) Contribution of the hydrophobic effect to globular protein stability J. Mol. Biol. 226, 29-35
-
(1992)
J. Mol. Biol.
, vol.226
, pp. 29-35
-
-
Pace, C.N.1
-
33
-
-
0033621044
-
The maximal affinity of ligands
-
Kuntz, I. D., Chen, K., Sharp, K. A., and Kollman, P. A. (1999) The maximal affinity of ligands Proc. Natl. Acad. Sci. U. S. A. 96, 9997-10002
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 9997-10002
-
-
Kuntz, I.D.1
Chen, K.2
Sharp, K.A.3
Kollman, P.A.4
-
34
-
-
84861017386
-
Methyl effects on protein-ligand binding
-
Leung, C. S., Leung, S. S., Tirado-Rives, J., and Jorgensen, W. L. (2012) Methyl effects on protein-ligand binding J. Med. Chem. 55, 4489-4500
-
(2012)
J. Med. Chem.
, vol.55
, pp. 4489-4500
-
-
Leung, C.S.1
Leung, S.S.2
Tirado-Rives, J.3
Jorgensen, W.L.4
-
35
-
-
0023657746
-
Interaction of acyl coenzyme A substrates and analogues with pig kidney medium-chain acyl-coA dehydrogenase
-
Powell, P. J., Lau, S. M., Killian, D., and Thorpe, C. (1987) Interaction of acyl coenzyme A substrates and analogues with pig kidney medium-chain acyl-coA dehydrogenase Biochemistry 26, 3704-3710
-
(1987)
Biochemistry
, vol.26
, pp. 3704-3710
-
-
Powell, P.J.1
Lau, S.M.2
Killian, D.3
Thorpe, C.4
-
36
-
-
33846792442
-
Structure, Properties, and Prepartion of Boronic Acid Derivatives. Overview of Their Reactions and Applications
-
In (Hall, D. G. Ed.), pp, Wiley-VCH, Weinheim, Germany.
-
Hall, D. G. (2005) Structure, Properties, and Prepartion of Boronic Acid Derivatives. Overview of Their Reactions and Applications, In Boronic Acids (Hall, D. G., Ed.), pp 8-12, Wiley-VCH, Weinheim, Germany.
-
(2005)
Boronic Acids
, pp. 8-12
-
-
Hall, D.G.1
-
37
-
-
8144227950
-
Human fatty acid synthase: Structure and substrate selectivity of the thioesterase domain
-
Chakravarty, B., Gu, Z., Chirala, S. S., Wakil, S. J., and Quiocho, F. A. (2004) Human fatty acid synthase: structure and substrate selectivity of the thioesterase domain Proc. Natl. Acad. Sci. U. S. A. 101, 15567-15572
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 15567-15572
-
-
Chakravarty, B.1
Gu, Z.2
Chirala, S.S.3
Wakil, S.J.4
Quiocho, F.A.5
-
38
-
-
80053148792
-
Crystal structure of FAS thioesterase domain with polyunsaturated fatty acyl adduct and inhibition by dihomo-gamma-linolenic acid
-
Zhang, W., Chakravarty, B., Zheng, F., Gu, Z., Wu, H., Mao, J., Wakil, S. J., and Quiocho, F. A. (2011) Crystal structure of FAS thioesterase domain with polyunsaturated fatty acyl adduct and inhibition by dihomo-gamma-linolenic acid Proc. Natl. Acad. Sci. U. S. A. 108, 15757-15762
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 15757-15762
-
-
Zhang, W.1
Chakravarty, B.2
Zheng, F.3
Gu, Z.4
Wu, H.5
Mao, J.6
Wakil, S.J.7
Quiocho, F.A.8
-
39
-
-
0141726877
-
A 'rule of three' for fragment-based lead discovery?
-
Congreve, M., Carr, R., Murray, C., and Jhoti, H. (2003) A 'rule of three' for fragment-based lead discovery? Drug Discovery Today 8, 876-877
-
(2003)
Drug Discovery Today
, vol.8
, pp. 876-877
-
-
Congreve, M.1
Carr, R.2
Murray, C.3
Jhoti, H.4
-
40
-
-
1942453243
-
Ligand efficiency: A useful metric for lead selection
-
Hopkins, A. L., Groom, C. R., and Alex, A. (2004) Ligand efficiency: a useful metric for lead selection Drug Discovery Today 9, 430-431
-
(2004)
Drug Discovery Today
, vol.9
, pp. 430-431
-
-
Hopkins, A.L.1
Groom, C.R.2
Alex, A.3
|