-
2
-
-
57649226492
-
The bacteriophage DNA packaging motor
-
Rao VB, Feiss M (2008) The bacteriophage DNA packaging motor. Annual review of genetics 42: 647-681.
-
(2008)
Annual Review of Genetics
, vol.42
, pp. 647-681
-
-
Rao, V.B.1
Feiss, M.2
-
3
-
-
0031218420
-
Phage DNA packaging
-
Fujisawa H, Morita M (1997) Phage DNA packaging. Genes to Cells 2: 537-545. (Pubitemid 127688601)
-
(1997)
Genes to Cells
, vol.2
, Issue.9
, pp. 537-545
-
-
Fujisawa, H.1
Morita, M.2
-
4
-
-
84856402988
-
Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages
-
Sun S, Gao S, Kondabagil K, Xiang Y, Rossmann MG, et al. (2012) Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages. Proceedings of the National Academy of Sciences 109: 817-822.
-
(2012)
Proceedings of the National Academy of Sciences
, vol.109
, pp. 817-822
-
-
Sun, S.1
Gao, S.2
Kondabagil, K.3
Xiang, Y.4
Rossmann, M.G.5
-
5
-
-
0029129145
-
Virus DNA packaging: The strategy used by phage λ
-
Catalano CE, Cue D, Feiss M (1995) Virus DNA packaging: the strategy used by phage λ. Molecular microbiology 16: 1075-1086.
-
(1995)
Molecular Microbiology
, vol.16
, pp. 1075-1086
-
-
Catalano, C.E.1
Cue, D.2
Feiss, M.3
-
7
-
-
80052751075
-
Novel Virulent and Broad-Host-Range Erwinia amylovora Bacteriophages Reveal a High Degree of Mosaicism and a Relationship to Enterobacteriaceae Phages
-
Born Y, Fieseler L, Marazzi J, Lurz R, Duffy B, et al. (2011) Novel Virulent and Broad-Host-Range Erwinia amylovora Bacteriophages Reveal a High Degree of Mosaicism and a Relationship to Enterobacteriaceae Phages. Applied and environmental microbiology 77: 5945-5954.
-
(2011)
Applied and Environmental Microbiology
, vol.77
, pp. 5945-5954
-
-
Born, Y.1
Fieseler, L.2
Marazzi, J.3
Lurz, R.4
Duffy, B.5
-
8
-
-
19944434101
-
The generalized transducing Salmonella bacteriophage ES18: Complete genome sequence and DNA packaging strategy
-
DOI 10.1128/JB.187.3.1091-1104.2005
-
Casjens SR, Gilcrease EB, Winn-Stapley DA, Schicklmaier P, Schmieger H, et al. (2005) The generalized transducing Salmonella bacteriophage ES18: complete genome sequence and DNA packaging strategy. Journal of bacteriology 187: 1091-1104. (Pubitemid 40189782)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.3
, pp. 1091-1104
-
-
Casjens, S.R.1
Gilcrease, E.B.2
Winn-Stapley, D.A.3
Schicklmaier, P.4
Schmieger, H.5
Pedulla, M.L.6
Ford, M.E.7
Houtz, J.M.8
Hatfull, G.F.9
Hendrix, R.W.10
-
9
-
-
26244431891
-
A defined in Vitro system for DNA packaging by the bacteriophage SPP1: Insights into the headful packaging mechanism
-
DOI 10.1016/j.jmb.2005.08.063, PII S0022283605010302
-
Oliveira L, Alonso JC, Tavares P (2005) A Defined in Vitro System for DNA Packaging by the Bacteriophage SPP1: Insights into the Headful Packaging Mechanism. Journal of molecular biology 353: 529-539. (Pubitemid 41414732)
-
(2005)
Journal of Molecular Biology
, vol.353
, Issue.3
, pp. 529-539
-
-
Oliveira, L.1
Alonso, J.C.2
Tavares, P.3
-
11
-
-
0027217224
-
A novel terminase activity associated with the DNA packaging protein gp17 of bacteriophage T4
-
DOI 10.1006/viro.1993.1452
-
Bhattacharyya SP, Rao VB (1993) A novel terminase activity associated with the DNA packaging protein gp17 of bacteriophage T4. Virology 196: 34-44. (Pubitemid 223051554)
-
(1993)
Virology
, vol.196
, Issue.1
, pp. 34-44
-
-
Bhattacharyya, S.P.1
Rao, V.B.2
-
12
-
-
0028040514
-
Structural analysis of DNA cleaved in vivo by bacteriophage T4 terminase
-
DOI 10.1016/0378-1119(94)90834-6
-
Bhattacharyya SP, Rao VB (1994) Structural analysis of DNA cleaved in vivo by bacteriophage T4 terminase. Gene 146: 67-72. (Pubitemid 24264822)
-
(1994)
Gene
, vol.146
, Issue.1
, pp. 67-72
-
-
Bhattacharyya, S.P.1
Rao, V.B.2
-
13
-
-
79955142220
-
Sequence characteristics of T4-like bacteriophage IME08 genome termini revealed by high throughput sequencing
-
Jiang X, Jiang H, Li C, Wang S, Mi Z, et al. (2011) Sequence characteristics of T4-like bacteriophage IME08 genome termini revealed by high throughput sequencing. Virology Journal 8: 194.
-
(2011)
Virology Journal
, vol.8
, pp. 194
-
-
Jiang, X.1
Jiang, H.2
Li, C.3
Wang, S.4
Mi, Z.5
-
14
-
-
0020046318
-
The genome of frog virus 3, an animal DNA virus, is circularly permuted and terminally redundant
-
DOI 10.1073/pnas.79.2.248
-
Goorha R, Murti K (1982) The genome of frog virus 3, an animal DNA virus, is circularly permuted and terminally redundant. Proceedings of the National Academy of Sciences 79: 248-252. (Pubitemid 12137698)
-
(1982)
Proceedings of the National Academy of Sciences of the United States of America
, vol.79
, Issue.2 I
, pp. 248-252
-
-
Goorha, R.1
Murti, K.G.2
-
15
-
-
0024720285
-
A component of the side tail fiber of Escherichia coli bacteriophage lambda can functionally replace the receptor-recognizing part of a long tail fiber protein of the unrelated bacteriophage T4
-
Montag D, Schwarz H, Henning U (1989) A component of the side tail fiber of Escherichia coli bacteriophage lambda can functionally replace the receptor-recognizing part of a long tail fiber protein of the unrelated bacteriophage T4. Journal of Bacteriology 171: 4378-4384.
-
(1989)
Journal of Bacteriology
, vol.171
, pp. 4378-4384
-
-
Montag, D.1
Schwarz, H.2
Henning, U.3
-
17
-
-
78651226477
-
Isolation and rapid genetic characterization of a novel T4-like bacteriophage
-
Sheng W, Huanhuan J, Jiankui C, Dabin L, Cun L, et al. (2010) Isolation and rapid genetic characterization of a novel T4-like bacteriophage. Journal of Medical Colleges of PLA 25: 331-340.
-
(2010)
Journal of Medical Colleges of PLA
, vol.25
, pp. 331-340
-
-
Sheng, W.1
Huanhuan, J.2
Jiankui, C.3
Dabin, L.4
Cun, L.5
-
19
-
-
55549089660
-
Accurate whole human genome sequencing using reversible terminator chemistry
-
Bentley DR, Balasubramanian S, Swerdlow HP, Smith GP, Milton J, et al. (2008) Accurate whole human genome sequencing using reversible terminator chemistry. Nature 456: 53-59.
-
(2008)
Nature
, vol.456
, pp. 53-59
-
-
Bentley, D.R.1
Balasubramanian, S.2
Swerdlow, H.P.3
Smith, G.P.4
Milton, J.5
-
21
-
-
77749264604
-
Semiconductors inspire new sequencing technologies
-
Pennisi E (2010) Semiconductors inspire new sequencing technologies. Science 327: 1190-1190.
-
(2010)
Science
, vol.327
, pp. 1190-1190
-
-
Pennisi, E.1
-
22
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
DOI 10.1101/gr.074492.107
-
Zerbino DR, Birney E (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome research 18: 821-829. (Pubitemid 351645072)
-
(2008)
Genome Research
, vol.18
, Issue.5
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
23
-
-
66449136667
-
ABySS: A parallel assembler for short read sequence data
-
Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJM, et al. (2009) ABySS: a parallel assembler for short read sequence data. Genome research 19: 1117-1123.
-
(2009)
Genome Research
, vol.19
, pp. 1117-1123
-
-
Simpson, J.T.1
Wong, K.2
Jackman, S.D.3
Schein, J.E.4
Jones, S.J.M.5
-
24
-
-
40049104732
-
SOAP: Short oligonucleotide alignment program
-
DOI 10.1093/bioinformatics/btn025
-
Li R, Li Y, Kristiansen K, Wang J (2008) SOAP: short oligonucleotide alignment program. Bioinformatics 24: 713-714. (Pubitemid 351321217)
-
(2008)
Bioinformatics
, vol.24
, Issue.5
, pp. 713-714
-
-
Li, R.1
Li, Y.2
Kristiansen, K.3
Wang, J.4
-
25
-
-
84874604550
-
-
Computer program distributed by the author. Available: Accessed 2011 July 15
-
Gordon A (2011) FASTX-Toolkit. Computer program distributed by the author. Available: http://hannonlab cshl edu/fastx-toolkit/index html. Accessed 2011 July 15.
-
(2011)
FASTX-Toolkit
-
-
Gordon, A.1
-
26
-
-
40549120596
-
The RAST Server: Rapid annotations using subsystems technology
-
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, et al. (2008) The RAST Server: rapid annotations using subsystems technology. BMC genomics 9: 75.
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
DeJongh, M.4
Disz, T.5
-
27
-
-
84870664804
-
Complete Genome Sequence of IME11, a New N4-Like Bacteriophage
-
Fan H, Fan H, An X, Huang Y, Zhang Z, et al. (2012) Complete Genome Sequence of IME11, a New N4-Like Bacteriophage. Journal of virology 86: 13861-13861.
-
(2012)
Journal of Virology
, vol.86
, pp. 13861-13861
-
-
Fan, H.1
Fan, H.2
An, X.3
Huang, Y.4
Zhang, Z.5
-
28
-
-
84878261070
-
Whole genome sequencing and comparative genomic analyses of two Vibrio cholerae O139 Bengal-specific Podoviruses to other N4-like phages reveal extensive genetic diversity
-
Fouts DE, Klumpp J, Bishop-Lilly KA, Rajavel M, Willner KM, et al. (2013) Whole genome sequencing and comparative genomic analyses of two Vibrio cholerae O139 Bengal-specific Podoviruses to other N4-like phages reveal extensive genetic diversity. Virology Journal 10: 165.
-
(2013)
Virology Journal
, vol.10
, pp. 165
-
-
Fouts, D.E.1
Klumpp, J.2
Bishop-Lilly, K.A.3
Rajavel, M.4
Willner, K.M.5
-
29
-
-
2142738304
-
WebLogo: A sequence logo generator
-
DOI 10.1101/gr.849004
-
Crooks GE, Hon G, Chandonia JM, Brenner SE (2004) WebLogo: a sequence logo generator. Genome research 14: 1188-1190. (Pubitemid 38811555)
-
(2004)
Genome Research
, vol.14
, Issue.6
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.-M.3
Brenner, S.E.4
-
30
-
-
84862903848
-
Genomics of staphylococcal Twort-like phages-potential therapeutics of the post-antibiotic era
-
Łobocka M, Hejnowicz MS, Da̧browski K, Gozdek A, Kosakowski J, et al. (2012) Genomics of staphylococcal Twort-like phages-potential therapeutics of the post-antibiotic era. Advances in virus research 83: 143-216.
-
(2012)
Advances in Virus Research
, vol.83
, pp. 143-216
-
-
Łobocka, M.1
Hejnowicz, M.S.2
Da̧browski, K.3
Gozdek, A.4
Kosakowski, J.5
-
31
-
-
63449110899
-
The genome of Bacillus subtilis bacteriophage SPO1
-
Stewart CR, Casjens SR, Cresawn SG, Houtz JM, Smith AL, et al. (2009) The genome of Bacillus subtilis bacteriophage SPO1. Journal of molecular biology 388: 48-70.
-
(2009)
Journal of Molecular Biology
, vol.388
, pp. 48-70
-
-
Stewart, C.R.1
Casjens, S.R.2
Cresawn, S.G.3
Houtz, J.M.4
Smith, A.L.5
-
32
-
-
0022555917
-
Initiation of phage φ29 DNA replication by mutants with deletions at the carboxyl end of the terminal protein
-
Zaballos A, Salas M, Mellado RP (1986) Initiation of phage φ29 DNA replication by mutants with deletions at the carboxyl end of the terminal protein. Gene 43: 103-110. (Pubitemid 16011530)
-
(1986)
Gene
, vol.43
, Issue.1-2
, pp. 103-110
-
-
Zaballos, A.1
Salas, M.2
Mellado, R.P.3
-
33
-
-
0039345644
-
Nucleotide sequence at the termini of the DNA of Bacillus subtilis phage phi 29
-
Escarmís C, Salas M (1981) Nucleotide sequence at the termini of the DNA of Bacillus subtilis phage phi 29. Proceedings of the National Academy of Sciences 78: 1446.
-
(1981)
Proceedings of the National Academy of Sciences
, vol.78
, pp. 1446
-
-
Escarmís, C.1
Salas, M.2
-
34
-
-
4544321747
-
Complete genomic sequence of bacteriophage B3, a Mu-like phage of Pseudomonas aeruginosa
-
DOI 10.1128/JB.186.19.6560-6574.2004
-
Braid MD, Silhavy JL, Kitts CL, Cano RJ, Howe MM (2004) Complete genomic sequence of bacteriophage B3, a Mu-like phage of Pseudomonas aeruginosa. Journal of bacteriology 186: 6560-6574. (Pubitemid 39258139)
-
(2004)
Journal of Bacteriology
, vol.186
, Issue.19
, pp. 6560-6574
-
-
Braid, M.D.1
Silhavy, J.L.2
Kitts, C.L.3
Cano, R.J.4
Howe, M.M.5
-
35
-
-
0034176951
-
Recombination-dependent DNA replication in phage T4
-
Kreuzer KN (2000) Recombination-dependent DNA replication in phage T4. Trends in biochemical sciences 25: 165-173.
-
(2000)
Trends in Biochemical Sciences
, vol.25
, pp. 165-173
-
-
Kreuzer, K.N.1
-
36
-
-
0027131809
-
A cytotoxic early gene of Bacillus subtilis bacteriophage SPO1
-
Wei P, Stewart CR (1993) A cytotoxic early gene of Bacillus subtilis bacteriophage SPO1. Journal of bacteriology 175: 7887-7900. (Pubitemid 24004396)
-
(1993)
Journal of Bacteriology
, vol.175
, Issue.24
, pp. 7887-7900
-
-
Wei, P.1
Stewart, C.R.2
-
37
-
-
69849085776
-
Roles of genes 38, 39, and 40 in shutoff of host biosyntheses during infection of Bacillus subtilis by bacteriophage SPO1
-
Stewart CR, Yip TKS, Myles B, Laughlin L (2009) Roles of genes 38, 39, and 40 in shutoff of host biosyntheses during infection of Bacillus subtilis by bacteriophage SPO1. Virology 392: 271-274.
-
(2009)
Virology
, vol.392
, pp. 271-274
-
-
Stewart, C.R.1
Yip, T.K.S.2
Myles, B.3
Laughlin, L.4
-
38
-
-
1542286922
-
Roles of Genes 44, 50, and 51 in Regulating Gene Expression and Host Takeover during Infection of Bacillus subtilis by Bacteriophage SPO1
-
DOI 10.1128/JB.186.6.1785-1792.2004
-
Sampath A, Stewart CR (2004) Roles of genes 44, 50, and 51 in regulating gene expression and host takeover during infection of Bacillus subtilis by bacteriophage SPO1. Journal of bacteriology 186: 1785-1792. (Pubitemid 38314523)
-
(2004)
Journal of Bacteriology
, vol.186
, Issue.6
, pp. 1785-1792
-
-
Sampath, A.1
Stewart, C.R.2
-
39
-
-
0032486599
-
Genes and regulatory sites of the 'host-takeover module' in the terminal redundancy of Bacillus subtilis bacteriophage SPO1
-
DOI 10.1006/viro.1998.9197
-
Stewart CR, Gaslightwala I, Hinata K, Krolikowski KA, Needleman DS, et al. (1998) Genes and Regulatory Sites of the "Host-Takeover Module" in the Terminal Redundancy of Bacillus subtilis Bacteriophage SPO1. Virology 246: 329-340. (Pubitemid 28384046)
-
(1998)
Virology
, vol.246
, Issue.2
, pp. 329-340
-
-
Stewart, C.R.1
Gaslightwala, I.2
Hinata, K.3
Krolikowski, K.A.4
Needleman, D.S.5
Peng, A.S.-Y.6
Peterman, M.A.7
Tobias, A.8
Wei, P.9
|