Recombination-dependent DNA replication in phage T4

Trends in Biochemical Sciences

Volumn 25, Issue 4, 2000, Pages 165-173

  Kreuzer, Kenneth N ^a  

^a DUKE UNIVERSITY MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RECOMBINANT PROTEIN;

BACTERIOPHAGE T4; DNA DAMAGE; DNA RECOMBINATION; DNA REPAIR; DNA REPLICATION; DNA SYNTHESIS; GENETIC RECOMBINATION; LIFE CYCLE; NONHUMAN; PRIORITY JOURNAL; REVIEW;

BACTERIOPHAGE T4; DNA REPLICATION; DNA, VIRAL; RECOMBINATION, GENETIC;

EID: 0034176951     PISSN: 09680004     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0968-0004(00)01559-0     Document Type: Review

References (54)

1. Edgar R.S.et al. A comparative study of conditional lethal mutations of bacteriophage T4D. Genetics. 49:1964;635-648.
2. Mosig G. Relationship of T4 DNA replication and recombination. Mathews C.K.et al. Bacteriophage T4. 1983;120-130 American Society for Microbiology.
3. Mosig G. Recombination and recombination-dependent DNA replication in bacteriophage T4. Annu. Rev. Genet. 32:1998;379-413.
4. Kreuzer K.N.et al. Recombination-dependent DNA replication stimulated by double-strand breaks in bacteriophage T4. J. Bacteriol. 177:1995;6844-6853.
5. George J.W., Kreuzer K.N. Repair of double-strand breaks in bacteriophage T4 by a mechanism that involves extensive DNA replication. Genetics. 143:1996;1507-1520.
6. Mueller J.E.et al. Intron mobility in phage T4 occurs in the context of recombination-dependent DNA replication by way of multiple pathways. Genes Dev. 10:1996;351-364.
7. Mosig G.et al. Multiple initiation mechanisms adapt phage T4 DNA replication to physiological changes during T4's development. FEMS Microbiol. Rev. 17:1995;83-98.
8. Belanger K.G., Kreuzer K.N. Bacteriophage T4 initiates bidirectional DNA replication through a two-step process. Mol. Cell. 2:1998;693-701.
9. Carles-Kinch K., Kreuzer K.N. RNA-DNA hybrid formation at a bacteriophage T4 replication origin. J. Mol. Biol. 266:1997;915-926.
10. Streisinger G.et al. Chromosome structure in phage T4. III: Terminal redundancy and length determination. Proc. Natl. Acad. Sci. U. S. A. 57:1967;292-295.
11. Kemper B., Brown D.T. Function of gene 49 of bacteriophage T4. II: Analysis of intracellular development and the structure of very fast-sedimenting DNA. J. Virol. 18:1976;1000-1015.
12. Mizuuchi K.et al. T4 endonuclease VII cleaves Holliday structures. Cell. 29:1982;357-365.
13. Kalinski A., Black L.W. End structure and mechanism of packaging of bacteriophage T4 DNA. J. Virol. 58:1986;951-954.
14. Mosig G. Homologous recombination. Karam J.D. Molecular Biology of Bacteriophage T4. 1994;54-82 ASM Press, Washington DC, USA.
15. Appasani K.et al. Bacteriophage T4 gp2 interferes with cell viability and with bacteriophage lambda red recombination. J. Bacteriol. 181:1999;1352-1355.
16. Tomso, D.J. and Kreuzer, K.N. Double strand break repair in tandem repeats during bacteriophage T4 infection. Genetics (in press).
17. Lipinska B.et al. Cloning and identification of bacteriophage T4 gene 2 product gp2 and action of gp2 on infecting DNA in vivo. J. Bacteriol. 171:1989;488-497.
18. Dannenberg R., Mosig G. Early intermediates in bacteriophage T4 DNA replication and recombination. J. Virol. 45:1983;813-831.
19. Formosa T., Alberts B.M. Purification and characterization of the T4 bacteriophage uvsX protein. J. Biol. Chem. 261:1986;6107-6118.
20. Hinton D.M., Nossal N.G. Cloning of the bacteriophage T4 uvsX gene and purification and characterization of the T4 uvsX recombination protein. J. Biol. Chem. 261:1986;5663-5673.
21. Yonesaki T., Minagawa T. T4 phage gene uvsX product catalyses homologous DNA pairing. EMBO J. 4:1985;3321-3327.
22. Huang Y.J.et al. Role of exonucleolytic degradation in group I intron homing in phage T4. Genetics. 153:1999;1501-1512.
23. Wiberg J.S. Mutants of bacteriophage T4 unable to cause breakdown of host DNA. Proc. Natl. Acad. Sci. U. S. A. 55:1967;614-621.
24. Mickelson C., Wiberg J.S. Membrane-associated DNase activity controlled by genes 46 and 47 of bacteriophage T4D and elevated DNase activity associated with the T4 das mutation. J. Virol. 40:1981;65-77.
25. Albright L.M., Geiduschek E.P. Site-specific cleavage of T4 DNA associated with the absence of gene 46 product function. J. Virol. 47:1983;77-88.
26. Sharples G.J., Leach D.R.F. Structural and functional similarities between the SbcCD proteins of Escherichia coli and the RAD50 and MRE11 (RAD32) recombination and repair proteins of yeast. Mol. Microbiol. 17:1995;1215-1220.
27. Yonesaki T., Minagawa T. Synergistic action of three recombination gene products of bacteriophage T4, uvsX, uvsY and gene 32 proteins. J. Biol. Chem. 264:1989;7814-7820.
28. Morrical S.W., Alberts B.M. The uvsY protein of bacteriophage T4 modulates recombination-dependent DNA synthesis in vitro. J. Biol. Chem. 265:1990;15096-15103.
29. Kodadek T.et al. The phage T4 uvsY recombination protein stabilizes presynaptic filaments. J. Biol. Chem. 264:1989;16451-16457.
30. New J.H.et al. Rad52 protein stimulates DNA strand exchange by Rad51 and replication protein A. Nature. 391:1998;407-410.
31. Sung P. Function of yeast Rad52 protein as a mediator between replication protein A and the Rad51 recombinase. J. Biol. Chem. 272:1997;28194-28197.
32. Beernink H.T., Morrical S.W. RMPs. recombination/replication mediator proteins Trends Biochem. Sci. 24:1999;385-389.
33. Salinas F., Kodadek T. Phage T4 homologous strand exchange. a DNA helicase, not the strand transferase, drives polar branch migration Cell. 82:1995;111-119.
34. Yonesaki T. Involvement of a replicative DNA helicase of bacteriophage T4 in DNA recombination. Genetics. 138:1994;247-252.
35. Kuroki E., Yonesaki T. DNA helicase mutants of bacteriophage T4 that are defective in DNA recombination. Mol. Gen. Genet. 262:1999;525-533.
36. Kodadek T., Alberts B.M. Stimulation of protein-directed strand exchange by a DNA helicase. Nature. 326:1987;312-314.
37. Carles-Kinch K.et al. Bacteriophage T4 UvsW protein is a helicase involved in recombination, repair, and the regulation of DNA replication origins. EMBO J. 16:1997;4142-4151.
38. Hamlett N.V., Berger H. Mutations altering genetic recombination and repair of DNA in bacteriophage T4. Virology. 63:1975;539-567.
39. Nossal N.G. The bacteriophage T4 DNA replication fork. Karam J.D. Molecular Biology of Bacteriophage T4. 1994;43-53 ASM Press, Washington DC, USA.
40. Kreuzer K.N., Morrical S.W. Initiation of DNA replication. Karam J.D. Molecular Biology of Bacteriophage T4. 1994;28-42 ASM Press, Washington DC, USA.
41. Barry J., Alberts B.M. Purification and characterization of bacteriophage T4 gene 59 protein: a DNA helicase assembly protein involved in DNA replication. J. Biol. Chem. 269:1994;33049-33062.
42. Spacciapoli P., Nossal N.G. Interaction of DNA polymerase and DNA helicase within the bacteriophage T4 DNA replication complex: leading strand synthesis by the T4 DNA polymerase mutant A737V (tsL141) requires the T4 gene 59 helicase assembly protein. J. Biol. Chem. 269:1994;447-455.
43. Morrical S.W.et al. The gene 59 protein of bacteriophage T4 modulates the intrinsic and ssDNA-stimulated ATPase activities of gene 41 protein, the T4 replicative helicase. J. Biol. Chem. 269:1994;33069-33081.
44. Morrical S.W.et al. The gene 59 protein of bacteriophage T4: characterization of protein-protein interactions with gene 32 protein, the T4 single-stranded DNA binding protein. J. Biol. Chem. 271:1996;20198-20207.
45. Formosa T., Alberts B.M. DNA synthesis dependent on genetic recombination. characterization of a reaction catalysed by purified T4 proteins Cell. 47:1986;793-806.
46. Womack F.C. An analysis of single-burst progeny of bacteria singly infected with a bacteriophage heterozygote. Virology. 21:1963;232-241.
47. Mosig G. Genetic recombination in bacteriophage T4 during replication of DNA fragments. Cold Spring Harbor Symp. Quant. Biol. 28:1963;35-41.
48. Mosig G.et al. The patterns of recombination and segregation in terminal regions of T4 DNA molecules. Mol. Gen. Genet. 113:1971;51-91.
49. Clyman J.et al. Mobile introns in the T-even phages. Karam J.D. Molecular Biology of Bacteriophage T4. 1994;83-88 ASM Press, Washington DC, USA.
50. Luria S. Reactivation of irradiated bacteriophage by transfer of self-reproducing units. Proc. Natl. Acad. Sci. U. S. A. 33:1947;253-264.
51. Kreuzer K.N., Drake J.W. Repair of lethal DNA damage. Karam J.D. Molecular Biology of Bacteriophage T4. 1994;89-97 ASM Press, Washington DC, USA.
52. Hong G., Kreuzer K.N. An antitumor drug-induced topoisomerase cleavage complex blocks a bacteriophage T4 replication fork in vivo. Mol. Cell Biol. 20:2000;594-603.
53. Jensch F., Kemper B. Endonuclease VII resolves Y-junctions in branched DNA in vitro. EMBO J. 5:1986;181-189.
54. Liu J.I.et al. Replication fork assembly at recombination intermediates is required for bacterial growth. Proc. Natl. Acad. Sci. U. S. A. 96:1999;3552-3555.