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Volumn 39, Issue 4, 2014, Pages 1099-1107

A plastid phylogeny of the African rattans (Ancistrophyllinae, Arecaceae)

Author keywords

atpI atpH; climbing habit; liana; Palmae; psbA trnH; tropical rain forest

Indexed keywords


EID: 84908255476     PISSN: 03636445     EISSN: 15482324     Source Type: Journal    
DOI: 10.1600/036364414X682634     Document Type: Article
Times cited : (10)

References (48)
  • 1
    • 0000501656 scopus 로고
    • Information theory as an extension of the maximum likelihood principle
    • eds. B. N. Petrov, and F. Csaki. Akademiai Kiado, Budapest
    • Akaike, H. 1973. Information theory as an extension of the maximum likelihood principle. Pp. 267-281 in Second International Symposium on Information Theory eds. B. N. Petrov, and F. Csaki. Akademiai Kiado, Budapest
    • (1973) Second International Symposium on Information Theory , pp. 267-281
    • Akaike, H.1
  • 2
    • 80055061459 scopus 로고    scopus 로고
    • Assessing molecular signature for some potential date (phoenix dactylifera l) cultivars from saudi arabia, based on chloroplast dna sequences rpob and psba-Trnh
    • Al-Qurainy, F., S. Khan, F. M. Al-Hemaid, M. A. Ali, M. Tarroum, and M. Ashraf. 2011. Assessing molecular signature for some potential date (Phoenix dactylifera L.) cultivars from Saudi Arabia, based on chloroplast DNA sequences rpoB and psbA-TrnH. International Journal of Molecular Sciences 12: 6871-6880
    • (2011) International Journal of Molecular Sciences , vol.12 , pp. 6871-6880
    • Al-Qurainy, F.1    Khan, S.2    Al-Hemaid, F.M.3    Ali, M.A.4    Tarroum, M.5    Ashraf, M.6
  • 3
    • 0001542894 scopus 로고    scopus 로고
    • Phylogeny of the palm family (arecaceae) based on rps16 intron and trnl-Trnf plastid dna sequences
    • eds. K. L. Wilson, and D. A. Morrison. Melbourne, Australia: CSIRO
    • Asmussen, C. B., W. J. Baker, and J. Dransfield. 2000. Phylogeny of the palm family (Arecaceae) based on rps16 intron and trnL-TrnF plastid DNA sequences. Pp. 525-535 in Monocots: systematics and evolution, eds. K. L. Wilson, and D. A. Morrison. Melbourne, Australia: CSIRO
    • (2000) Monocots: Systematics and Evolution , pp. 525-535
    • Asmussen, C.B.1    Baker, W.J.2    Dransfield, J.3
  • 6
    • 84872618879 scopus 로고    scopus 로고
    • Global biogeography and diversification of palms sheds light on the evolution of tropical lineages ii: Diversification history and origin of regional assemblages
    • Baker, W. J. and T. L. P. Couvreur. 2013. Global biogeography and diversification of palms sheds light on the evolution of tropical lineages. II: Diversification history and origin of regional assemblages. Journal of Biogeography 40: 286-289
    • (2013) Journal of Biogeography , vol.40 , pp. 286-289
    • Baker, W.J.1    Couvreur, T.L.P.2
  • 7
    • 0034130101 scopus 로고    scopus 로고
    • A phylogeny, character evolution, and a new classification of the calamoid palms
    • Baker, W. J., J. Dransfield, and T. A. Hedderson. 2000A. Phylogeny, character evolution, and a new classification of the calamoid palms. Systematic Botany 25: 297-322
    • (2000) Systematic Botany , vol.25 , pp. 297-322
    • Baker, W.J.1    Dransfield, J.2    Hedderson, T.A.3
  • 8
    • 0034079633 scopus 로고    scopus 로고
    • Molecular phylogenetics of subfamily calamoideae (palmae) based on nrdna its and cpdna rps16 intron sequence data
    • Baker, W. J., T. A. Hedderson, and J. Dransfield. 2000b. Molecular Phylogenetics of Subfamily Calamoideae (Palmae) Based on nrDNA ITS and cpDNA rps16 Intron Sequence DatA. Molecular Phylogenetics and Evolution 14: 195-217
    • (2000) Molecular Phylogenetics and Evolution , vol.14 , pp. 195-217
    • Baker, W.J.1    Hedderson, T.A.2    Dransfield, J.3
  • 10
    • 81855188256 scopus 로고    scopus 로고
    • Drivers of diversification in the vegetable ivory palms (Arecaceae: Ceroxyloideae, Phytelepheae) - Vicariance or adaptive shifts in niche traits?
    • eds. O. Seberg, A. T. Peterson, A. Barfod, and A. M. Davis. Aarhus University Press
    • Barfod, A. S., P. Trénel, and F. Borchsenius. 2010. Drivers of diversification in the vegetable ivory palms (Arecaceae: Ceroxyloideae, Phytelepheae) - Vicariance or adaptive shifts in niche traits? in Diversity, phylogeny and evolution of Monocotyledons eds. O. Seberg, A. T. Peterson, A. Barfod, and A. M. Davis. 225-243: Aarhus University Press
    • (2010) Diversity, Phylogeny and Evolution of Monocotyledons , pp. 225-243
    • Barfod, A.S.1    Trénel, P.2    Borchsenius, F.3
  • 11
    • 84876332469 scopus 로고    scopus 로고
    • Tropical rain forest evolution: Palms as a model group
    • Couvreur, T. L. P. and W. J. Baker. 2013. Tropical rain forest evolution: palms as a model group. BMC Biology 11: 48
    • (2013) BMC Biology , vol.11 , pp. 48
    • Couvreur, T.L.P.1    Baker, W.J.2
  • 12
    • 35948947430 scopus 로고    scopus 로고
    • Phylogenetic relationships of the cultivated palm bactris gasipaes (kunth)with its wild relatives inferred fromchloroplast and nuclear dna polymorphisms
    • Couvreur, T. L. P.,W. Hahn, J.-J. de Granville, J.-L. Pham, B. Ludeña, and J.-C. Pintaud. 2007. Phylogenetic relationships of the cultivated palm Bactris gasipaes (Kunth)with its wild relatives inferred fromchloroplast and nuclear DNA polymorphisms. Systematic Botany 32: 519-530
    • (2007) Systematic Botany , vol.32 , pp. 519-530
    • Hahn, W.P.L.C.T.1    De Granville, J.-J.2    Pham, J.-L.3    Ludeña, B.4    Pintaud, J.-C.5
  • 13
    • 34447299928 scopus 로고    scopus 로고
    • Phylogeny of the palm tribe chamaedoreeae (arecaceae) based on plastid dna sequences
    • Cuenca, A. and C. B. Asmussen-Lange. 2007. Phylogeny of the palm tribe Chamaedoreeae (Arecaceae) based on plastid DNA sequences. Systematic Botany 32: 250-263
    • (2007) Systematic Botany , vol.32 , pp. 250-263
    • Cuenca, A.1    Asmussen-Lange, C.B.2
  • 17
    • 13244255415 scopus 로고    scopus 로고
    • Muscle: A multiple sequence alignment method with reduced time and space complexity
    • Edgar, R. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5: 113
    • (2004) BMC Bioinformatics , vol.5 , pp. 113
    • Edgar, R.1
  • 20
    • 0000461280 scopus 로고
    • Confidence limits on phylogenetics: An approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limits on phylogenetics: an approach using the bootstrap. Evolution 39: 783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 21
    • 84959747425 scopus 로고
    • Toward defining the course of evolution: Minimum change for a specific tree topology
    • Fitch, W. M. 1971. Toward defining the course of evolution: minimum change for a specific tree topology. Systematic Zoology 20: 406-416
    • (1971) Systematic Zoology , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 22
    • 0346271739 scopus 로고    scopus 로고
    • Bootstrapping phylogenetic trees: Theory and methods
    • Holmes, S. 2003. Bootstrapping phylogenetic trees: Theory and methods. Statistical Science 18: 241-255
    • (2003) Statistical Science , vol.18 , pp. 241-255
    • Holmes, S.1
  • 23
    • 57349120057 scopus 로고    scopus 로고
    • The climbing habit in palms: Biomechanics of the cirrus and flagellum
    • Isnard, S. and N. P. Rowe. 2008. The climbing habit in palms: biomechanics of the cirrus and flagellum. American Journal of Botany 95: 1538-1547
    • (2008) American Journal of Botany , vol.95 , pp. 1538-1547
    • Isnard, S.1    Rowe, N.P.2
  • 24
    • 79957567311 scopus 로고    scopus 로고
    • DNA barcoding: A new tool for palm taxonomists?
    • Jeanson, M. L., J.-N. Labat, and D. P. Little. 2011. DNA barcoding: a new tool for palm taxonomists? Annals of Botany 108: 1445-1451
    • (2011) Annals of Botany , vol.108 , pp. 1445-1451
    • Jeanson, M.L.1    Labat, J.-N.2    Little, D.P.3
  • 26
    • 78649730619 scopus 로고    scopus 로고
    • Advances in the use of dna barcodes to build a community phylogeny for tropical trees in a puerto rican forest dynamics plot
    • Kress, W. J., D. L. Erickson, N. G. Swenson, J. Thompson, M. Uriarte, and J. K. Zimmerman. 2010. Advances in the Use of DNA Barcodes to Build a Community Phylogeny for Tropical Trees in a Puerto Rican Forest Dynamics Plot. PLoS ONE 5: e15409
    • (2010) PLoS ONE , vol.5 , pp. e15409
    • Kress, W.J.1    Erickson, D.L.2    Swenson, N.G.3    Thompson, J.4    Uriarte, M.5    Zimmerman, J.K.6
  • 27
    • 0036926072 scopus 로고    scopus 로고
    • A phylogenetic analysis of tribe areceae (arecaceae) using two low-copy nuclear genes
    • Lewis, C. and J. J. Doyle. 2002. A phylogenetic analysis of tribe Areceae (Arecaceae) using two low-copy nuclear genes. Plant Systematics and Evolution 236: 1-17
    • (2002) Plant Systematics and Evolution , vol.236 , pp. 1-17
    • Lewis, C.1    Doyle, J.J.2
  • 31
    • 45849154165 scopus 로고    scopus 로고
    • Jmodeltest: Phylogenetic model averaging
    • Posada, D. 2008. jModelTest: Phylogenetic Model Averaging. Molecular Biology and Evolution 25: 1253-1256
    • (2008) Molecular Biology and Evolution , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 32
    • 39749201346 scopus 로고    scopus 로고
    • Version 1.4. Available from
    • Rambaut, A. and A. J. Drummond. 2003. Tracer. Version 1.4. Available from http://evolve.zoo.ox.ac.uk/.
    • (2003) Tracer
    • Rambaut, A.1    Drummond, A.J.2
  • 33
    • 84871188941 scopus 로고    scopus 로고
    • Cenozoic colonization and diversification patterns of tropical american palms: Evidence from astrocaryum (arecaceae
    • Roncal, J., F. Kahn, B. Millan, T. L. P. Couvreur, and J.-C. Pintaud. 2013. Cenozoic colonization and diversification patterns of tropical American palms: evidence from Astrocaryum (Arecaceae). Botanical Journal of the Linnean Society 171: 120-139
    • (2013) Botanical Journal of the Linnean Society , vol.171 , pp. 120-139
    • Roncal, J.1    Kahn, F.2    Millan, B.3    Couvreur, T.L.P.4    Pintaud, J.-C.5
  • 36
    • 34250767339 scopus 로고    scopus 로고
    • Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: The tortoise and the hare III
    • Shaw, J., E. B. Lickey, E. E. Schilling, and R. L. Small. 2007. Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. American Journal of Botany 94: 275-288
    • (2007) American Journal of Botany , vol.94 , pp. 275-288
    • Shaw, J.1    Lickey, E.B.2    Schilling, E.E.3    Small, R.L.4
  • 37
    • 0034350427 scopus 로고    scopus 로고
    • Gaps as characters in sequencebased phylogenetic analyses
    • Simmons, M. P. and H. OchoterenA. 2000. Gaps as characters in sequencebased phylogenetic analyses. Systematic Biology 49: 369-381
    • (2000) Systematic Biology , vol.49 , pp. 369-381
    • Simmons, M.P.1    Ochoterena, H.2
  • 38
    • 33750403801 scopus 로고    scopus 로고
    • Raxml-vi-hpc: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis, A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 39
    • 50249100595 scopus 로고    scopus 로고
    • A rapid bootstrap algorithm for the raxml web-servers
    • Stamatakis, A., P. Hoover, and J. Rougemont. 2008. A rapid bootstrap algorithm for the RAxML web-servers. Systematic Biology 57: 758-771
    • (2008) Systematic Biology , vol.57 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 40
    • 0034983646 scopus 로고    scopus 로고
    • Bayesian selection of continuous-Time markov chain evolutionary models
    • Suchard, M. A., R. E. Weiss, and J. S. Sinsheimer. 2001. Bayesian selection of continuous-Time Markov chain evolutionary models. Molecular Biology and Evolution 18: 1001-1013
    • (2001) Molecular Biology and Evolution , vol.18 , pp. 1001-1013
    • Suchard, M.A.1    Weiss, R.E.2    Sinsheimer, J.S.3
  • 42
    • 84865205396 scopus 로고    scopus 로고
    • A taxonomic revision of the rattans of africa (arecaceae: Calamoideae
    • Sunderland, T. C. H. 2012. A taxonomic revision of the rattans of Africa (Arecaceae: Calamoideae). Phytotaxa 51: 1-76
    • (2012) Phytotaxa , vol.51 , pp. 1-76
    • Sunderland, T.C.H.1
  • 43
    • 62249199747 scopus 로고    scopus 로고
    • The utilization and management of African rattans: Constraints to sustainable supply through cultivation
    • Sunderland, T. C. H., M. Balinga, S. Asaha, and R. Malleson. 2008. The utilization and management of African rattans: Constraints to sustainable supply through cultivation. Forests. Trees and Livelihoods 38: 337-353
    • (2008) Forests. Trees and Livelihoods , vol.38 , pp. 337-353
    • Sunderland, T.C.H.1    Balinga, M.2    Asaha, S.3    Malleson, R.4
  • 44
    • 3543141262 scopus 로고    scopus 로고
    • A socio-economic profile of the rattan trade in Cameroon
    • eds. T. C. H. Sunderland, and J. P. Profizi. Beijing, China: International Network for Bamboo and Rattan (INBAR) Proceedings
    • Sunderland, T. C. H., L. Defo, N. Ndam, M. Dione, and I. Tamnjong. 2002. A socio-economic profile of the rattan trade in Cameroon. Pp. 115-140 in New research on African rattans, eds. T. C. H. Sunderland, and J. P. Profizi. Beijing, China: International Network for Bamboo and Rattan (INBAR) Proceedings
    • (2002) New Research on African Rattans , pp. 115-140
    • Sunderland, T.C.H.1    Defo, L.2    Ndam, N.3    Dione, M.4    Tamnjong, I.5
  • 47
    • 0025344992 scopus 로고
    • Chloroplast dna evolves slowly in the palm family (arecaceae
    • Wilson, M. A., B. Gaut, and M. T. Clegg. 1990. Chloroplast DNA evolves slowly in the palm family (Arecaceae). Molecular Biology and Evolution 7: 303-314
    • (1990) Molecular Biology and Evolution , vol.7 , pp. 303-314
    • Wilson, M.A.1    Gaut, B.2    Clegg, M.T.3
  • 48
    • 84870465776 scopus 로고    scopus 로고
    • A preliminary assessment of matk, rbcl, and trnh-psba as dna barcodes for calamus (arecaceae) species in china with a note on its
    • Yang, H.-Q., Y.-R. Dong, Z.-J. Gu, N. Liang, and J.-B. Yang. 2012. A Preliminary Assessment of matK, rbcL, and trnH-psbA as DNA barcodes for Calamus (Arecaceae) Species in China with a Note on ITS. Annales Botanici Fennici 49: 319-330
    • (2012) Annales Botanici Fennici , vol.49 , pp. 319-330
    • Yang, H.-Q.1    Dong, Y.-R.2    Gu, Z.-J.3    Liang, N.4    Yang, J.-B.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.