-
1
-
-
0000501656
-
Information theory as an extension of the maximum likelihood principle
-
eds. B. N. Petrov, and F. Csaki. Akademiai Kiado, Budapest
-
Akaike, H. 1973. Information theory as an extension of the maximum likelihood principle. Pp. 267-281 in Second International Symposium on Information Theory eds. B. N. Petrov, and F. Csaki. Akademiai Kiado, Budapest
-
(1973)
Second International Symposium on Information Theory
, pp. 267-281
-
-
Akaike, H.1
-
2
-
-
80055061459
-
Assessing molecular signature for some potential date (phoenix dactylifera l) cultivars from saudi arabia, based on chloroplast dna sequences rpob and psba-Trnh
-
Al-Qurainy, F., S. Khan, F. M. Al-Hemaid, M. A. Ali, M. Tarroum, and M. Ashraf. 2011. Assessing molecular signature for some potential date (Phoenix dactylifera L.) cultivars from Saudi Arabia, based on chloroplast DNA sequences rpoB and psbA-TrnH. International Journal of Molecular Sciences 12: 6871-6880
-
(2011)
International Journal of Molecular Sciences
, vol.12
, pp. 6871-6880
-
-
Al-Qurainy, F.1
Khan, S.2
Al-Hemaid, F.M.3
Ali, M.A.4
Tarroum, M.5
Ashraf, M.6
-
3
-
-
0001542894
-
Phylogeny of the palm family (arecaceae) based on rps16 intron and trnl-Trnf plastid dna sequences
-
eds. K. L. Wilson, and D. A. Morrison. Melbourne, Australia: CSIRO
-
Asmussen, C. B., W. J. Baker, and J. Dransfield. 2000. Phylogeny of the palm family (Arecaceae) based on rps16 intron and trnL-TrnF plastid DNA sequences. Pp. 525-535 in Monocots: systematics and evolution, eds. K. L. Wilson, and D. A. Morrison. Melbourne, Australia: CSIRO
-
(2000)
Monocots: Systematics and Evolution
, pp. 525-535
-
-
Asmussen, C.B.1
Baker, W.J.2
Dransfield, J.3
-
4
-
-
33646505486
-
A new subfamily classification of the palm family (arecaceae): Evidence from plastid dna phylogeny
-
Asmussen, C. B., J. Dransfield, V. Deickmann, A. S. Barfod, J. C. Pintaud, and W. J. Baker. 2006. A new subfamily classification of the palm family (Arecaceae): evidence from plastid DNA phylogeny. Botanical Journal of the Linnean Society 151: 15-38
-
(2006)
Botanical Journal of the Linnean Society
, vol.151
, pp. 15-38
-
-
Asmussen, C.B.1
Dransfield, J.2
Deickmann, V.3
Barfod, A.S.4
Pintaud, J.C.5
Baker, W.J.6
-
5
-
-
0009873769
-
-
Memoirs of the New York Botanical Garden
-
Baker, W., J. Dransfield, M. Harley, and A. Bruneau. 1999. Morphology and cladistic analysis of subfamily Calamoideae (Palmae). Memoirs of the New York Botanical Garden 83: 307-324
-
(1999)
Morphology and Cladistic Analysis of Subfamily Calamoideae (Palmae
, vol.83
, pp. 307-324
-
-
Baker, W.1
Dransfield, J.2
Harley, M.3
Bruneau, A.4
-
6
-
-
84872618879
-
Global biogeography and diversification of palms sheds light on the evolution of tropical lineages ii: Diversification history and origin of regional assemblages
-
Baker, W. J. and T. L. P. Couvreur. 2013. Global biogeography and diversification of palms sheds light on the evolution of tropical lineages. II: Diversification history and origin of regional assemblages. Journal of Biogeography 40: 286-289
-
(2013)
Journal of Biogeography
, vol.40
, pp. 286-289
-
-
Baker, W.J.1
Couvreur, T.L.P.2
-
7
-
-
0034130101
-
A phylogeny, character evolution, and a new classification of the calamoid palms
-
Baker, W. J., J. Dransfield, and T. A. Hedderson. 2000A. Phylogeny, character evolution, and a new classification of the calamoid palms. Systematic Botany 25: 297-322
-
(2000)
Systematic Botany
, vol.25
, pp. 297-322
-
-
Baker, W.J.1
Dransfield, J.2
Hedderson, T.A.3
-
8
-
-
0034079633
-
Molecular phylogenetics of subfamily calamoideae (palmae) based on nrdna its and cpdna rps16 intron sequence data
-
Baker, W. J., T. A. Hedderson, and J. Dransfield. 2000b. Molecular Phylogenetics of Subfamily Calamoideae (Palmae) Based on nrDNA ITS and cpDNA rps16 Intron Sequence DatA. Molecular Phylogenetics and Evolution 14: 195-217
-
(2000)
Molecular Phylogenetics and Evolution
, vol.14
, pp. 195-217
-
-
Baker, W.J.1
Hedderson, T.A.2
Dransfield, J.3
-
9
-
-
67749097725
-
Complete generic-level phylogenetic analyses of palms (arecaceae) with comparisons of supertree and supermatrix approaches
-
Baker, W. J., V. Savolainen, C. B. Asmussen-Lange, M. W. Chase, J. Dransfield, F. Forest, M. M. Harley, N. W. Uhl, and M. Wilkinson. 2009. Complete generic-level phylogenetic analyses of palms (Arecaceae) with comparisons of supertree and supermatrix approaches. Systematic Biology 58: 240-256
-
(2009)
Systematic Biology
, vol.58
, pp. 240-256
-
-
Baker, W.J.1
Savolainen, V.2
Asmussen-Lange, C.B.3
Chase, M.W.4
Dransfield, J.5
Forest, F.6
Harley, M.M.7
Uhl, N.W.8
Wilkinson, M.9
-
10
-
-
81855188256
-
Drivers of diversification in the vegetable ivory palms (Arecaceae: Ceroxyloideae, Phytelepheae) - Vicariance or adaptive shifts in niche traits?
-
eds. O. Seberg, A. T. Peterson, A. Barfod, and A. M. Davis. Aarhus University Press
-
Barfod, A. S., P. Trénel, and F. Borchsenius. 2010. Drivers of diversification in the vegetable ivory palms (Arecaceae: Ceroxyloideae, Phytelepheae) - Vicariance or adaptive shifts in niche traits? in Diversity, phylogeny and evolution of Monocotyledons eds. O. Seberg, A. T. Peterson, A. Barfod, and A. M. Davis. 225-243: Aarhus University Press
-
(2010)
Diversity, Phylogeny and Evolution of Monocotyledons
, pp. 225-243
-
-
Barfod, A.S.1
Trénel, P.2
Borchsenius, F.3
-
11
-
-
84876332469
-
Tropical rain forest evolution: Palms as a model group
-
Couvreur, T. L. P. and W. J. Baker. 2013. Tropical rain forest evolution: palms as a model group. BMC Biology 11: 48
-
(2013)
BMC Biology
, vol.11
, pp. 48
-
-
Couvreur, T.L.P.1
Baker, W.J.2
-
12
-
-
35948947430
-
Phylogenetic relationships of the cultivated palm bactris gasipaes (kunth)with its wild relatives inferred fromchloroplast and nuclear dna polymorphisms
-
Couvreur, T. L. P.,W. Hahn, J.-J. de Granville, J.-L. Pham, B. Ludeña, and J.-C. Pintaud. 2007. Phylogenetic relationships of the cultivated palm Bactris gasipaes (Kunth)with its wild relatives inferred fromchloroplast and nuclear DNA polymorphisms. Systematic Botany 32: 519-530
-
(2007)
Systematic Botany
, vol.32
, pp. 519-530
-
-
Hahn, W.P.L.C.T.1
De Granville, J.-J.2
Pham, J.-L.3
Ludeña, B.4
Pintaud, J.-C.5
-
13
-
-
34447299928
-
Phylogeny of the palm tribe chamaedoreeae (arecaceae) based on plastid dna sequences
-
Cuenca, A. and C. B. Asmussen-Lange. 2007. Phylogeny of the palm tribe Chamaedoreeae (Arecaceae) based on plastid DNA sequences. Systematic Botany 32: 250-263
-
(2007)
Systematic Botany
, vol.32
, pp. 250-263
-
-
Cuenca, A.1
Asmussen-Lange, C.B.2
-
15
-
-
56949098232
-
-
Kew: Kew Publishing
-
Dransfield, J., N. W. Uhl, C. B. Asmussen, W. J. Baker, M. M. Harley, and C. E. Lewis. 2008. Genera Palmarum: The evolution and classification of palms. Kew: Kew Publishing
-
(2008)
Genera Palmarum: The Evolution and Classification of Palms
-
-
Dransfield, J.1
Uhl, N.W.2
Asmussen, C.B.3
Baker, W.J.4
Harley, M.M.5
Lewis, C.E.6
-
16
-
-
78650469140
-
-
Available from
-
Drummond, A. J., B. Ashton, S. Buxton, M. Cheung, A. Cooper, J. Heled,M. Kearse, R.Moir, S. Stones-Havas, S. Sturrock, T. Thierer, andA.Wilson. 2010. Geneious v5.1, Available from http://www.geneious.com
-
(2010)
Geneious v5.1
-
-
Drummond, A.J.1
Ashton, B.2
Buxton, S.3
Cheung, M.4
Cooper, A.5
Heled, J.6
Kearse, M.7
Moir, R.8
Stones-Havas, S.9
Sturrock, S.10
Thierer, T.11
Wilson, A.12
-
17
-
-
13244255415
-
Muscle: A multiple sequence alignment method with reduced time and space complexity
-
Edgar, R. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5: 113
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.1
-
19
-
-
84989432221
-
Testing significance of incongruence
-
Farris, J. S., M. Källersjö, A. G. Kluge, and C. Bult. 1994. Testing significance of incongruence. Cladistics 10: 315-319
-
(1994)
Cladistics
, vol.10
, pp. 315-319
-
-
Farris, J.S.1
Källersjö, M.2
Kluge, A.G.3
Bult, C.4
-
20
-
-
0000461280
-
Confidence limits on phylogenetics: An approach using the bootstrap
-
Felsenstein, J. 1985. Confidence limits on phylogenetics: an approach using the bootstrap. Evolution 39: 783-791
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
21
-
-
84959747425
-
Toward defining the course of evolution: Minimum change for a specific tree topology
-
Fitch, W. M. 1971. Toward defining the course of evolution: minimum change for a specific tree topology. Systematic Zoology 20: 406-416
-
(1971)
Systematic Zoology
, vol.20
, pp. 406-416
-
-
Fitch, W.M.1
-
22
-
-
0346271739
-
Bootstrapping phylogenetic trees: Theory and methods
-
Holmes, S. 2003. Bootstrapping phylogenetic trees: Theory and methods. Statistical Science 18: 241-255
-
(2003)
Statistical Science
, vol.18
, pp. 241-255
-
-
Holmes, S.1
-
23
-
-
57349120057
-
The climbing habit in palms: Biomechanics of the cirrus and flagellum
-
Isnard, S. and N. P. Rowe. 2008. The climbing habit in palms: biomechanics of the cirrus and flagellum. American Journal of Botany 95: 1538-1547
-
(2008)
American Journal of Botany
, vol.95
, pp. 1538-1547
-
-
Isnard, S.1
Rowe, N.P.2
-
24
-
-
79957567311
-
DNA barcoding: A new tool for palm taxonomists?
-
Jeanson, M. L., J.-N. Labat, and D. P. Little. 2011. DNA barcoding: a new tool for palm taxonomists? Annals of Botany 108: 1445-1451
-
(2011)
Annals of Botany
, vol.108
, pp. 1445-1451
-
-
Jeanson, M.L.1
Labat, J.-N.2
Little, D.P.3
-
26
-
-
78649730619
-
Advances in the use of dna barcodes to build a community phylogeny for tropical trees in a puerto rican forest dynamics plot
-
Kress, W. J., D. L. Erickson, N. G. Swenson, J. Thompson, M. Uriarte, and J. K. Zimmerman. 2010. Advances in the Use of DNA Barcodes to Build a Community Phylogeny for Tropical Trees in a Puerto Rican Forest Dynamics Plot. PLoS ONE 5: e15409
-
(2010)
PLoS ONE
, vol.5
, pp. e15409
-
-
Kress, W.J.1
Erickson, D.L.2
Swenson, N.G.3
Thompson, J.4
Uriarte, M.5
Zimmerman, J.K.6
-
27
-
-
0036926072
-
A phylogenetic analysis of tribe areceae (arecaceae) using two low-copy nuclear genes
-
Lewis, C. and J. J. Doyle. 2002. A phylogenetic analysis of tribe Areceae (Arecaceae) using two low-copy nuclear genes. Plant Systematics and Evolution 236: 1-17
-
(2002)
Plant Systematics and Evolution
, vol.236
, pp. 1-17
-
-
Lewis, C.1
Doyle, J.J.2
-
29
-
-
70350161737
-
Phylogenetic analysis of seven wrky genes across the palm subtribe attaleinae (areceaceae) identifies syagrus as sister group of the coconut
-
Meerow, A. W., L. Noblick, J. W. Borrone, T. L. P. Couvreur, M. Mauro-Herrera, W. J. Hahn, D. N. Kuhn, K. Nakamura, N. H. Oleas, and R. J. Schnell. 2009. Phylogenetic analysis of seven WRKY genes across the Palm subtribe Attaleinae (Areceaceae) identifies Syagrus as sister group of the Coconut. PLoS ONE 4: e7353
-
(2009)
PLoS ONE
, vol.4
, pp. e7353
-
-
Meerow, A.W.1
Noblick, L.2
Borrone, J.W.3
Couvreur, T.L.P.4
Mauro-Herrera, M.5
Hahn, W.J.6
Kuhn, D.N.7
Nakamura, K.8
Oleas, N.H.9
Schnell, R.J.10
-
30
-
-
71849101311
-
-
CIPRES
-
Miller, M. A., M. T. Holder, R. Vos, P. E. Midford, T. Liebowitz, L. Chan, P. Hoover, and T. Warnow. 2009. The CIPRES Portals. CIPRES. http://www.phylo.org/sub-sections/portal
-
(2009)
The CIPRES Portals
-
-
Miller, M.A.1
Holder, M.T.2
Vos, R.3
Midford, P.E.4
Liebowitz, T.5
Chan, L.6
Hoover, P.7
Warnow, T.8
-
31
-
-
45849154165
-
Jmodeltest: Phylogenetic model averaging
-
Posada, D. 2008. jModelTest: Phylogenetic Model Averaging. Molecular Biology and Evolution 25: 1253-1256
-
(2008)
Molecular Biology and Evolution
, vol.25
, pp. 1253-1256
-
-
Posada, D.1
-
32
-
-
39749201346
-
-
Version 1.4. Available from
-
Rambaut, A. and A. J. Drummond. 2003. Tracer. Version 1.4. Available from http://evolve.zoo.ox.ac.uk/.
-
(2003)
Tracer
-
-
Rambaut, A.1
Drummond, A.J.2
-
33
-
-
84871188941
-
Cenozoic colonization and diversification patterns of tropical american palms: Evidence from astrocaryum (arecaceae
-
Roncal, J., F. Kahn, B. Millan, T. L. P. Couvreur, and J.-C. Pintaud. 2013. Cenozoic colonization and diversification patterns of tropical American palms: evidence from Astrocaryum (Arecaceae). Botanical Journal of the Linnean Society 171: 120-139
-
(2013)
Botanical Journal of the Linnean Society
, vol.171
, pp. 120-139
-
-
Roncal, J.1
Kahn, F.2
Millan, B.3
Couvreur, T.L.P.4
Pintaud, J.-C.5
-
35
-
-
79957566575
-
A set of 100 chloroplast dna primer pairs to study population genetics and phylogeny in monocotyledons
-
Scarcelli, N., A. Barnaud, W. Eiserhardt, U. A. Treier, M. Seveno, A. d'Anfray, Y. Vigouroux, and J.-C. Pintaud. 2011. A Set of 100 Chloroplast DNA Primer Pairs to Study Population Genetics and Phylogeny in Monocotyledons. PLoS ONE 6: e19954
-
(2011)
PLoS ONE
, vol.6
, pp. e19954
-
-
Scarcelli, N.1
Barnaud, A.2
Eiserhardt, W.3
Treier, U.A.4
Seveno D'anfray, A.M.5
Vigouroux, Y.6
Pintaud, J.-C.7
-
36
-
-
34250767339
-
Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: The tortoise and the hare III
-
Shaw, J., E. B. Lickey, E. E. Schilling, and R. L. Small. 2007. Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. American Journal of Botany 94: 275-288
-
(2007)
American Journal of Botany
, vol.94
, pp. 275-288
-
-
Shaw, J.1
Lickey, E.B.2
Schilling, E.E.3
Small, R.L.4
-
37
-
-
0034350427
-
Gaps as characters in sequencebased phylogenetic analyses
-
Simmons, M. P. and H. OchoterenA. 2000. Gaps as characters in sequencebased phylogenetic analyses. Systematic Biology 49: 369-381
-
(2000)
Systematic Biology
, vol.49
, pp. 369-381
-
-
Simmons, M.P.1
Ochoterena, H.2
-
38
-
-
33750403801
-
Raxml-vi-hpc: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis, A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
39
-
-
50249100595
-
A rapid bootstrap algorithm for the raxml web-servers
-
Stamatakis, A., P. Hoover, and J. Rougemont. 2008. A rapid bootstrap algorithm for the RAxML web-servers. Systematic Biology 57: 758-771
-
(2008)
Systematic Biology
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
42
-
-
84865205396
-
A taxonomic revision of the rattans of africa (arecaceae: Calamoideae
-
Sunderland, T. C. H. 2012. A taxonomic revision of the rattans of Africa (Arecaceae: Calamoideae). Phytotaxa 51: 1-76
-
(2012)
Phytotaxa
, vol.51
, pp. 1-76
-
-
Sunderland, T.C.H.1
-
43
-
-
62249199747
-
The utilization and management of African rattans: Constraints to sustainable supply through cultivation
-
Sunderland, T. C. H., M. Balinga, S. Asaha, and R. Malleson. 2008. The utilization and management of African rattans: Constraints to sustainable supply through cultivation. Forests. Trees and Livelihoods 38: 337-353
-
(2008)
Forests. Trees and Livelihoods
, vol.38
, pp. 337-353
-
-
Sunderland, T.C.H.1
Balinga, M.2
Asaha, S.3
Malleson, R.4
-
44
-
-
3543141262
-
A socio-economic profile of the rattan trade in Cameroon
-
eds. T. C. H. Sunderland, and J. P. Profizi. Beijing, China: International Network for Bamboo and Rattan (INBAR) Proceedings
-
Sunderland, T. C. H., L. Defo, N. Ndam, M. Dione, and I. Tamnjong. 2002. A socio-economic profile of the rattan trade in Cameroon. Pp. 115-140 in New research on African rattans, eds. T. C. H. Sunderland, and J. P. Profizi. Beijing, China: International Network for Bamboo and Rattan (INBAR) Proceedings
-
(2002)
New Research on African Rattans
, pp. 115-140
-
-
Sunderland, T.C.H.1
Defo, L.2
Ndam, N.3
Dione, M.4
Tamnjong, I.5
-
48
-
-
84870465776
-
A preliminary assessment of matk, rbcl, and trnh-psba as dna barcodes for calamus (arecaceae) species in china with a note on its
-
Yang, H.-Q., Y.-R. Dong, Z.-J. Gu, N. Liang, and J.-B. Yang. 2012. A Preliminary Assessment of matK, rbcL, and trnH-psbA as DNA barcodes for Calamus (Arecaceae) Species in China with a Note on ITS. Annales Botanici Fennici 49: 319-330
-
(2012)
Annales Botanici Fennici
, vol.49
, pp. 319-330
-
-
Yang, H.-Q.1
Dong, Y.-R.2
Gu, Z.-J.3
Liang, N.4
Yang, J.-B.5
|