메뉴 건너뛰기




Volumn 1368, Issue , 2014, Pages 183-189

Facilitating aptamer selection and collection by capillary transient isotachophoresis with laser-induced fluorescence detection

Author keywords

Capillary electrophoresis; Capillary transient isotachophoresis; Fluorescence detection; Fraction collection; SYBR Gold; Thrombin aptamer selection

Indexed keywords

CAPILLARY ELECTROPHORESIS; DNA; DRUG PRODUCTS; ENZYMES; LASER OPTICS; LASER PRODUCED PLASMAS; LIGANDS;

EID: 84908192528     PISSN: 00219673     EISSN: 18733778     Source Type: Journal    
DOI: 10.1016/j.chroma.2014.09.062     Document Type: Article
Times cited : (26)

References (37)
  • 1
    • 84858308226 scopus 로고    scopus 로고
    • Natural products as sources of new drugs over the 30 years from 1981 to 2010
    • Newman D.J., Cragg G.M. Natural products as sources of new drugs over the 30 years from 1981 to 2010. J. Nat. Prod. 2012, 75:311-335.
    • (2012) J. Nat. Prod. , vol.75 , pp. 311-335
    • Newman, D.J.1    Cragg, G.M.2
  • 2
  • 3
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk C., Gold L. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 1990, 249:505-510.
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 4
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • Ellington A.D., Szostak J.W. In vitro selection of RNA molecules that bind specific ligands. Nature 1990, 346:818-822.
    • (1990) Nature , vol.346 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 5
    • 0026575221 scopus 로고
    • Selection of single-stranded DNA molecules that bind and inhibit human thrombin
    • Bock L.C., Griffin L.C., Latham J.A., Vermaas E.H., Toole J.J. Selection of single-stranded DNA molecules that bind and inhibit human thrombin. Nature 1992, 355:564-566.
    • (1992) Nature , vol.355 , pp. 564-566
    • Bock, L.C.1    Griffin, L.C.2    Latham, J.A.3    Vermaas, E.H.4    Toole, J.J.5
  • 7
    • 77955792293 scopus 로고    scopus 로고
    • In Vitro selection of a DNA-templated small-molecule library reveals a class of macrocyclic kinase inhibitors
    • Kleiner R.E., Dumelin C.E., Tiu G.C., Sakurai K., Liu D.R. In Vitro selection of a DNA-templated small-molecule library reveals a class of macrocyclic kinase inhibitors. J. Am. Chem. Soc. 2010, 132:11779-11791.
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 11779-11791
    • Kleiner, R.E.1    Dumelin, C.E.2    Tiu, G.C.3    Sakurai, K.4    Liu, D.R.5
  • 8
    • 0034829726 scopus 로고    scopus 로고
    • The generality of DNA-templated synthesis as a basis for evolving non-natural small molecules
    • Gartner Z.J., Liu D.R. The generality of DNA-templated synthesis as a basis for evolving non-natural small molecules. J. Am. Chem. Soc. 2001, 123:6961-6963.
    • (2001) J. Am. Chem. Soc. , vol.123 , pp. 6961-6963
    • Gartner, Z.J.1    Liu, D.R.2
  • 9
    • 0037019530 scopus 로고    scopus 로고
    • Multistep small-molecule synthesis programmed by DNA templates
    • Gartner Z.J., Kanan M.W., Liu D.R. Multistep small-molecule synthesis programmed by DNA templates. J. Am. Chem. Soc. 2002, 124:10304-10306.
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 10304-10306
    • Gartner, Z.J.1    Kanan, M.W.2    Liu, D.R.3
  • 10
    • 4644350506 scopus 로고    scopus 로고
    • DNA-templated organic synthesis and selection of a library of macrocycles
    • Gartner Z.J. DNA-templated organic synthesis and selection of a library of macrocycles. Science 2004, 305:1601-1605.
    • (2004) Science , vol.305 , pp. 1601-1605
    • Gartner, Z.J.1
  • 11
    • 56449110342 scopus 로고    scopus 로고
    • Translation of DNA into a Library of 13 000 Synthetic Small-Molecule Macrocycles Suitable for in Vitro Selection
    • Tse B.N., Snyder T.M., Shen Y., Liu D.R. Translation of DNA into a Library of 13 000 Synthetic Small-Molecule Macrocycles Suitable for in Vitro Selection. J. Am. Chem. Soc. 2008, 130:15611-15626.
    • (2008) J. Am. Chem. Soc. , vol.130 , pp. 15611-15626
    • Tse, B.N.1    Snyder, T.M.2    Shen, Y.3    Liu, D.R.4
  • 13
    • 81455140666 scopus 로고    scopus 로고
    • Small-molecule discovery from DNA-encoded chemical libraries
    • Kleiner R.E., Dumelin C.E., Liu D.R. Small-molecule discovery from DNA-encoded chemical libraries. Chem. Soc. Rev. 2011, 40:5707.
    • (2011) Chem. Soc. Rev. , vol.40 , pp. 5707
    • Kleiner, R.E.1    Dumelin, C.E.2    Liu, D.R.3
  • 14
    • 0037444708 scopus 로고    scopus 로고
    • Affinity analysis of a protein-aptamer complex using nonequilibrium capillary electrophoresis of equilibrium mixtures
    • Berezovski M., Nutiu R., Li Y., Krylov S.N. Affinity analysis of a protein-aptamer complex using nonequilibrium capillary electrophoresis of equilibrium mixtures. Anal. Chem. 2003, 75:1382-1386.
    • (2003) Anal. Chem. , vol.75 , pp. 1382-1386
    • Berezovski, M.1    Nutiu, R.2    Li, Y.3    Krylov, S.N.4
  • 15
    • 14244263708 scopus 로고    scopus 로고
    • Nonequilibrium capillary electrophoresis of equilibrium mixtures: a universal tool for development of aptamers
    • Berezovski M., Drabovich A., Krylova S.M., Musheev M., Okhonin V., Petrov A., Krylov S.N. Nonequilibrium capillary electrophoresis of equilibrium mixtures: a universal tool for development of aptamers. J. Am. Chem. Soc. 2005, 127:3165-3171.
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 3165-3171
    • Berezovski, M.1    Drabovich, A.2    Krylova, S.M.3    Musheev, M.4    Okhonin, V.5    Petrov, A.6    Krylov, S.N.7
  • 16
    • 33846611331 scopus 로고    scopus 로고
    • Non-SELEX: selection of aptamers without intermediate amplification of candidate oligonucleotides
    • Berezovski M.V., Musheev M.U., Drabovich A.P., Jitkova J.V., Krylov S.N. Non-SELEX: selection of aptamers without intermediate amplification of candidate oligonucleotides. Nat. Protoc. 2006, 1:1359-1369.
    • (2006) Nat. Protoc. , vol.1 , pp. 1359-1369
    • Berezovski, M.V.1    Musheev, M.U.2    Drabovich, A.P.3    Jitkova, J.V.4    Krylov, S.N.5
  • 18
    • 18344375927 scopus 로고    scopus 로고
    • Neutralizing aptamers from whole-cell SELEX inhibit the RET receptor tyrosine kinase
    • Cerchia L., Duconge F., Pestourie C., Boulay J., Aissouni Y., Gombert K., et al. Neutralizing aptamers from whole-cell SELEX inhibit the RET receptor tyrosine kinase. PLoS Biol. 2005, 3:697-704.
    • (2005) PLoS Biol. , vol.3 , pp. 697-704
    • Cerchia, L.1    Duconge, F.2    Pestourie, C.3    Boulay, J.4    Aissouni, Y.5    Gombert, K.6
  • 19
    • 38849155858 scopus 로고    scopus 로고
    • Identification of liver cancer-specific aptamers using whole live cells
    • Shangguan D., Meng L., Cao Z.C., Xiao Z., Fang X., Li Y., et al. Identification of liver cancer-specific aptamers using whole live cells. Anal. Chem. 2008, 80:721-728.
    • (2008) Anal. Chem. , vol.80 , pp. 721-728
    • Shangguan, D.1    Meng, L.2    Cao, Z.C.3    Xiao, Z.4    Fang, X.5    Li, Y.6
  • 21
    • 0031563773 scopus 로고    scopus 로고
    • Oligonucleotide inhibitors of human thrombin that bind distinct epitopes
    • Tasset D.M., Kubik M.F., Steiner W. Oligonucleotide inhibitors of human thrombin that bind distinct epitopes. J. Mol. Biol. 1997, 272:688-698.
    • (1997) J. Mol. Biol. , vol.272 , pp. 688-698
    • Tasset, D.M.1    Kubik, M.F.2    Steiner, W.3
  • 22
    • 0034648757 scopus 로고    scopus 로고
    • Thrombin signalling and protease-activated receptors
    • Coughlin S.R. Thrombin signalling and protease-activated receptors. Nature 2000, 407:258-264.
    • (2000) Nature , vol.407 , pp. 258-264
    • Coughlin, S.R.1
  • 23
    • 67849128716 scopus 로고    scopus 로고
    • Critical roles for thrombin in acute and chronic inflammation
    • Chen D., Dorling A. Critical roles for thrombin in acute and chronic inflammation. J. Thromb. Haemost. 2009, 7:122-126.
    • (2009) J. Thromb. Haemost. , vol.7 , pp. 122-126
    • Chen, D.1    Dorling, A.2
  • 24
    • 0032214640 scopus 로고    scopus 로고
    • Aptamers as ligands in affinity probe capillary electrophoresis
    • German I., Buchanan D.D., Kennedy R.T. Aptamers as ligands in affinity probe capillary electrophoresis. Anal. Chem. 1998, 70:4540-4545.
    • (1998) Anal. Chem. , vol.70 , pp. 4540-4545
    • German, I.1    Buchanan, D.D.2    Kennedy, R.T.3
  • 25
    • 46249118260 scopus 로고    scopus 로고
    • High-sensitivity determination of human α-thrombin by its 29-mer aptamer in affinity probe capillary electrophoresis
    • Li Y., Guo L., Zhang F., Zhang Z., Tang J., Xie J. High-sensitivity determination of human α-thrombin by its 29-mer aptamer in affinity probe capillary electrophoresis. Electrophoresis 2008, 29:2570-2577.
    • (2008) Electrophoresis , vol.29 , pp. 2570-2577
    • Li, Y.1    Guo, L.2    Zhang, F.3    Zhang, Z.4    Tang, J.5    Xie, J.6
  • 26
    • 77954751011 scopus 로고    scopus 로고
    • Chemiluminescently labeled aptamers as the affinity probe for interaction analysis by capillary electrophoresis
    • Li H.-Y., Deng Q.-P., Zhang D.-W., Zhou Y.-L., Zhang X.-X. Chemiluminescently labeled aptamers as the affinity probe for interaction analysis by capillary electrophoresis. Electrophoresis 2010, 31:2452-2460.
    • (2010) Electrophoresis , vol.31 , pp. 2452-2460
    • Li, H.-Y.1    Deng, Q.-P.2    Zhang, D.-W.3    Zhou, Y.-L.4    Zhang, X.-X.5
  • 27
    • 0028946629 scopus 로고
    • Interaction of dimeric intercalating dyes with single-stranded DNA
    • Rye H.S., Glazer A.N. Interaction of dimeric intercalating dyes with single-stranded DNA. Nucleic Acids Res. 1995, 23:1215-1222.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 1215-1222
    • Rye, H.S.1    Glazer, A.N.2
  • 28
    • 0033559581 scopus 로고    scopus 로고
    • Characterization of SYBR Gold nucleic acid gel stain: a dye optimized for use with 300-nm ultraviolet transilluminators
    • Tuma R.S., Beaudet M.P., Jin X., Jones L.J., Cheung C.-Y., Yue S., et al. Characterization of SYBR Gold nucleic acid gel stain: a dye optimized for use with 300-nm ultraviolet transilluminators. Anal. Biochem. 1999, 268:278-288.
    • (1999) Anal. Biochem. , vol.268 , pp. 278-288
    • Tuma, R.S.1    Beaudet, M.P.2    Jin, X.3    Jones, L.J.4    Cheung, C.-Y.5    Yue, S.6
  • 29
    • 0035384605 scopus 로고    scopus 로고
    • Photophysical properties of fluorescent DNA-dyes bound to single- and double-stranded DNA in aqueous buffered solution
    • Cosa G., Focsaneanu K.-S., McLean J.R.N., McNamee J.P., Scaiano J.C. Photophysical properties of fluorescent DNA-dyes bound to single- and double-stranded DNA in aqueous buffered solution. Photochem. Photobiol. 2001, 73:585-599.
    • (2001) Photochem. Photobiol. , vol.73 , pp. 585-599
    • Cosa, G.1    Focsaneanu, K.-S.2    McLean, J.R.N.3    McNamee, J.P.4    Scaiano, J.C.5
  • 30
    • 3142708522 scopus 로고    scopus 로고
    • Investigations on DNA intercalation and surface binding by SYBR Green I, its structure determination and methodological implications
    • Zipper H. Investigations on DNA intercalation and surface binding by SYBR Green I, its structure determination and methodological implications. Nucleic Acids Res. 2004, 32:e103.
    • (2004) Nucleic Acids Res. , vol.32 , pp. e103
    • Zipper, H.1
  • 31
    • 3542994475 scopus 로고    scopus 로고
    • A new quantitative method for circulating DNA level in human serum by capillary zone electrophoresis with laser-induced fluorescence detection
    • Zhang P., Ren J., Shen Z. A new quantitative method for circulating DNA level in human serum by capillary zone electrophoresis with laser-induced fluorescence detection. Electrophoresis 2004, 25:1823-1828.
    • (2004) Electrophoresis , vol.25 , pp. 1823-1828
    • Zhang, P.1    Ren, J.2    Shen, Z.3
  • 32
    • 33745458659 scopus 로고    scopus 로고
    • Capillary electrophoresis of double-stranded DNA fragments using a new fluorescence intercalating dye EvaGreen
    • Sang F., Ren J. Capillary electrophoresis of double-stranded DNA fragments using a new fluorescence intercalating dye EvaGreen. J. Sep. Sci. 2006, 29:1275-1280.
    • (2006) J. Sep. Sci. , vol.29 , pp. 1275-1280
    • Sang, F.1    Ren, J.2
  • 33
    • 0026739662 scopus 로고
    • On-column transient and coupled column isotachophoretic preconcentration of protein samples in capillary zone electrophoresis
    • Foret F., Szoko E., Karger B.L. On-column transient and coupled column isotachophoretic preconcentration of protein samples in capillary zone electrophoresis. J. Chromatogr. 1992, 608:3-12.
    • (1992) J. Chromatogr. , vol.608 , pp. 3-12
    • Foret, F.1    Szoko, E.2    Karger, B.L.3
  • 35
    • 0001052858 scopus 로고    scopus 로고
    • Optimization of operational modes for transient isotachophoresis preconcentration-CZE
    • Hirokawa T., Okamoto H., Ikuta N., Gas B. Optimization of operational modes for transient isotachophoresis preconcentration-CZE. Anal. Sci. 2001, 17:i185.
    • (2001) Anal. Sci. , vol.17 , pp. i185
    • Hirokawa, T.1    Okamoto, H.2    Ikuta, N.3    Gas, B.4
  • 36
    • 84908173248 scopus 로고    scopus 로고
    • Com-bining capillary electrophoresis and next generation sequencing for aptamer selection
    • (to be submitted).
    • K.R. Riley, J. Gagliano, J. Xiao, M. Guthold, C.L. Colyer, J.C. Macosko, et al., Com-bining capillary electrophoresis and next generation sequencing for aptamer selection, J. Sep. Sci. (to be submitted).
    • J. Sep. Sci.
    • Riley, K.R.1    Gagliano, J.2    Xiao, J.3    Guthold, M.4    Colyer, C.L.5    Macosko, J.C.6
  • 37
    • 33645803017 scopus 로고    scopus 로고
    • Protein labeling with red squarylium dyes for analysis by capillary electrophoresis with laser-induced fluorescence detection
    • Yan W., Sloat A.L., Yagi S., Nakazumi H., Colyer C.L. Protein labeling with red squarylium dyes for analysis by capillary electrophoresis with laser-induced fluorescence detection. Electrophoresis 2006, 27:1347-1354.
    • (2006) Electrophoresis , vol.27 , pp. 1347-1354
    • Yan, W.1    Sloat, A.L.2    Yagi, S.3    Nakazumi, H.4    Colyer, C.L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.