Simultaneous characterization of sequence polymorphisms, glycosylation and phosphorylation of fibrinogen in a direct analysis by LC-MS

Biochimica et Biophysica Acta - Proteins and Proteomics

Volumn 1844, Issue 12, 2014, Pages 2284-2289

  Nagel, Tim ^a   Meyer, Bernd ^a  

^a UNIVERSITY OF HAMBURG   (Germany)

Author keywords

Fibrinogen; Glycosylation; Phosphorylation; Single nucleotide polymorphisms; Top down mass spectrometry

Indexed keywords

ALANINE; ARGININE; FIBRINOGEN; FIBRINOGEN AALPHA; FIBRINOGEN BBETA; FIBRINOGEN GAMMA; LYSINE; SIALIC ACID DERIVATIVE; THREONINE; UNCLASSIFIED DRUG;

ADULT; ALPHA CHAIN; ARTICLE; BLOOD CLOTTING; BRAIN ISCHEMIA; CONCENTRATION (PARAMETERS); ELECTROSPRAY; GENETIC RISK; HETEROZYGOTE; HOMOZYGOTE; HUMAN; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; NORMAL HUMAN; PLASMA; PROTEIN ANALYSIS; PROTEIN GLYCOSYLATION; PROTEIN ISOLATION; PROTEIN PHOSPHORYLATION; PROTEIN POLYMORPHISM; REVERSED PHASE HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84908191769     PISSN: 15709639     EISSN: 18781454     Source Type: Journal    
DOI: 10.1016/j.bbapap.2014.09.021     Document Type: Article

References (39)

1. J.W. Weisel Fibrinogen and fibrin Adv. Protein Chem. 70 2005 247 299
2. A.M. Carter, A.J. Catto, J.M. Bamford, and P.J. Grant Gender-specific associations of the fibrinogen B beta 448 polymorphism, fibrinogen levels, and acute cerebrovascular disease Arterioscler. Thromb. Vasc. Biol. 17 1997 589 594
3. S. Mallik, and P.P. Majumder A two-step genetic study on quantitative precursors of coronary artery disease in a homogeneous Indian population: case-control association discovery and validation by transmission-disequilibrium test J. Biosci. 36 2011 857 868
4. J. Klovaite, B.G. Nordestgaard, A. Tybjaerg-Hansen, and M. Benn Elevated fibrinogen levels are associated with risk of pulmonary embolism, but not with deep venous thrombosis Am. J. Respir. Crit. Care Med. 187 2013 286 293
5. K.L. Ong, A.W. Tso, S.S. Cherny, P.C. Sham, K.S. Lam, C.Q. Jiang, G.N. Thomas, T.H. Lam, and B.M. Cheung A genetic variant in the gene encoding fibrinogen beta chain predicted development of hypertension in Chinese men Thromb. Haemost. 103 2010 728 735
6. Y.L. Ko, L.A. Hsu, T.S. Hsu, C.T. Tsai, M.S. Teng, S.M. Wu, C.J. Chang, and Y.S. Lee Functional polymorphisms of FGA, encoding alpha fibrinogen, are associated with susceptibility to venous thromboembolism in a Taiwanese population Hum. Genet. 119 2006 84 91
7. A.M. Carter, A.J. Catto, H.P. Kohler, R.A. Ariens, M.H. Stickland, and P.J. Grant Alpha-fibrinogen Thr312Ala polymorphism and venous thromboembolism Blood 96 2000 1177 1179
8. J. Zhang, L. Yu, Y. Yin, Q. Lu, L. Lei, J. Xiao, J. Guo, J. Zhao, Y. Wang, G. He, Y. Xu, and L. He Association between two functional fibrinogen-related polymorphisms and ischemic stroke: a case-control study Genet. Test. Mol. Biomarkers 17 2013 789 793
9. Y. Zeng, L. Zhang, Z. Hu, Q. Yang, M. Ma, B. Liu, J. Xia, H. Xu, Y. Liu, and X. Du Fibrinogen polymorphisms associated with sporadic cerebral hemorrhage in a Chinese population J. Clin. Neurosci. 19 2012 753 756
10. NCBI SNP database http://www.ncbi.nlm.nih.gov/snp/
11. J. Suntharalingam, K. Goldsmith, V. van Marion, L. Long, C.M. Treacy, F. Dudbridge, M.R. Toshner, J. Pepke-Zaba, J.C. Eikenboom, and N.W. Morrell Fibrinogen Aalpha Thr312Ala polymorphism is associated with chronic thromboembolic pulmonary hypertension Eur. Respir. J. 31 2008 736 741
12. K.F. Standeven, P.J. Grant, A.M. Carter, T. Scheiner, J.W. Weisel, and R.A. Ariens Functional analysis of the fibrinogen Aalpha Thr312Ala polymorphism: effects on fibrin structure and function Circulation 107 2003 2326 2330
13. B. Adamczyk, W.B. Struwe, A. Ercan, P.A. Nigrovic, and P.M. Rudd Characterization of fibrinogen glycosylation and its importance for serum/plasma N-glycome analysis J. Proteome Res. 12 2013 444 454
14. G. Zauner, M. Hoffmann, E. Rapp, C.A. Koeleman, I. Dragan, A.M. Deelder, M. Wuhrer, and P.J. Hensbergen Glycoproteomic analysis of human fibrinogen reveals novel regions of O-glycosylation J. Proteome Res. 11 2012 5804 5814
15. M. Wuhrer, M.I. Catalina, A.M. Deelder, and C.H. Hokke Glycoproteomics based on tandem mass spectrometry of glycopeptides J. Chromatogr. B Anal. Technol. Biomed. Life Sci. 849 2007 115 128
16. P.H. Jensen, N.G. Karlsson, D. Kolarich, and N.H. Packer Structural analysis of N- and O-glycans released from glycoproteins Nat. Protoc. 7 2012 1299 1310
17. J. Zaia Mass spectrometry and glycomics Omics 14 2010 401 418
18. H. Zhou, Z. Ning, A.E. Starr, M. Abu-Farha, and D. Figeys Advancements in top-down proteomics Anal. Chem. 84 2012 720 734
19. A.L. Capriotti, C. Cavaliere, P. Foglia, R. Samperi, and A. Lagana Intact protein separation by chromatographic and/or electrophoretic techniques for top-down proteomics J. Chromatogr. A 1218 2011 8760 8776
20. J.F. Kellie, J.C. Tran, J.E. Lee, D.R. Ahlf, H.M. Thomas, I. Ntai, A.D. Catherman, K.R. Durbin, L. Zamdborg, A. Vellaichamy, P.M. Thomas, and N.L. Kelleher The emerging process of top down mass spectrometry for protein analysis: biomarkers, protein-therapeutics, and achieving high throughput Mol. Biosyst. 6 2010 1532 1539
21. F. Lanucara, and C.E. Eyers Top-down mass spectrometry for the analysis of combinatorial post-translational modifications Mass Spectrom. Rev. 32 2013 27 42
22. N. Leymarie, P.J. Griffin, K. Jonscher, D. Kolarich, R. Orlando, M. McComb, J. Zaia, J. Aguilan, W.R. Alley, F. Altmann, L.E. Ball, L. Basumallick, C.R. Bazemore-Walker, H. Behnken, M.A. Blank, K.J. Brown, S.C. Bunz, C.W. Cairo, J.F. Cipollo, R. Daneshfar, H. Desaire, R.R. Drake, E.P. Go, R. Goldman, C. Gruber, A. Halim, Y. Hathout, P.J. Hensbergen, D.M. Horn, D. Hurum, W. Jabs, G. Larson, M. Ly, B.F. Mann, K. Marx, Y. Mechref, B. Meyer, U. Moginger, C. Neusubeta, J. Nilsson, M.V. Novotny, J.O. Nyalwidhe, N.H. Packer, P. Pompach, B. Reiz, A. Resemann, J.S. Rohrer, A. Ruthenbeck, M. Sanda, J.M. Schulz, U. Schweiger-Hufnagel, C. Sihlbom, E. Song, G.O. Staples, D. Suckau, H. Tang, M. Thaysen-Andersen, R.I. Viner, Y. An, L. Valmu, Y. Wada, M. Watson, M. Windwarder, R. Whittal, M. Wuhrer, Y. Zhu, and C. Zou Interlaboratory study on differential analysis of protein glycosylation by mass spectrometry: the ABRF glycoprotein research multi-institutional study 2012 Mol. Cell. Proteomics 12 2013 2935 2951
23. H.N. Behnken, A. Ruthenbeck, J.M. Schulz, and B. Meyer Glycan analysis of prostate specific antigen (PSA) directly from the intact glycoprotein by HR-ESI/TOF-MS J. Proteome Res. 13 2014 997 1001
24. N. Leymarie, M. McComb, K. Jonscher, D. Kolarich, R. Orlando, and J. Zaia Glycoproteomics Research Group (gPRG) 2012 Quantitative Glycoprotein study, poster at ABRF annual meeting http://www.bumc.bu.edu/cardiovascularproteomics/files/2012/08/Leymarie/Zaia.pdf 2012
25. S.O. Brennan, B. Hammonds, and P.M. George Aberrant hepatic processing causes removal of activation peptide and primary polymerisation site from fibrinogen Canterbury (A alpha 20 Val -> Asp) J. Clin. Invest. 96 1995 2854 2858
26. A.P. Fellowes, S.O. Brennan, H.J. Ridgway, D.C. Heaton, and P.M. George Electrospray ionization mass spectrometry identification of fibrinogen Banks Peninsula (gamma280Tyr -> Cys): a new variant with defective polymerization Br. J. Haematol. 101 1998 24 31
27. A.L. Rockwood, S.L. Vanorden, and R.D. Smith Rapid calculation of isotope distributions Anal. Chem. 67 1995 2699 2704
28. A.L. Rockwood, S.L. VanOrden, and R.D. Smith Ultrahigh resolution isotope distribution calculations Rapid Commun. Mass Spectrom. 10 1996 54 59
29. M.W. Senko, S.C. Beu, and F.W. Mclafferty Automated assignment of charge states from resolved isotopic peaks for multiply-charged ions J. Am. Soc. Mass Spectrom. 6 1995 52 56
30. M.W. Senko, S.C. Beu, and F.W. Mclafferty Determination of monoisotopic masses and ion populations for large biomolecules from resolved isotopic distributions J. Am. Soc. Mass Spectrom 6 1995 229 233
31. R.P. Zahedi, U. Lewandrowski, J. Wiesner, S. Wortelkamp, J. Moebius, C. Schutz, U. Walter, S. Gambaryan, and A. Sickmann Phosphoproteome of resting human platelets J. Proteome Res. 7 2008 526 534
32. S. Beranova-Giorgianni, Y. Zhao, D.M. Desiderio, and F. Giorgianni Phosphoproteomic analysis of the human pituitary Pituitary 9 2006 109 120
33. A. Knezevic, O. Gornik, O. Polasek, M. Pucic, I. Redzic, M. Novokmet, P.M. Rudd, A.F. Wright, H. Campbell, I. Rudan, and G. Lauc Effects of aging, body mass index, plasma lipid profiles, and smoking on human plasma N-glycans Glycobiology 20 2010 959 969
34. M.J. Roth, A.J. Forbes, M.T. Boyne II, Y.B. Kim, D.E. Robinson, and N.L. Kelleher Precise and parallel characterization of coding polymorphisms, alternative splicing, and modifications in human proteins by mass spectrometry Mol. Cell. Proteomics 4 2005 1002 1008
35. M.J. Roth, B.A. Parks, J.T. Ferguson, M.T. Boyne II, and N.L. Kelleher "Proteotyping": population proteomics of human leukocytes using top down mass spectrometry Anal. Chem. 80 2008 2857 2866
36. C.M. Ryan, P. Souda, F. Halgand, D.T. Wong, J.A. Loo, K.F. Faull, and J.P. Whitelegge Confident assignment of intact mass tags to human salivary cystatins using top-down Fourier-transform ion cyclotron resonance mass spectrometry J. Am. Soc. Mass Spectrom. 21 2010 908 917
37. J. Zhang, X. Dong, T.A. Hacker, and Y. Ge Deciphering modifications in swine cardiac troponin I by top-down high-resolution tandem mass spectrometry J. Am. Soc. Mass Spectrom. 21 2010 940 948
38. S. Nicolardi, Y.E. van der Burgt, I. Dragan, P.J. Hensbergen, and A.M. Deelder Identification of new apolipoprotein-CIII glycoforms with ultrahigh resolution MALDI-FTICR mass spectrometry of human sera J. Proteome Res. 12 2013 2260 2268
39. Y. Yang, A. Barendregt, J.P. Kamerling, and A.J. Heck Analyzing protein micro-heterogeneity in chicken ovalbumin by high-resolution native mass spectrometry exposes qualitatively and semi-quantitatively 59 proteoforms Anal. Chem. 85 2013 12037 12045