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Volumn 12, Issue 10, 2013, Pages 2935-2951

Interlaboratory study on differential analysis of protein glycosylation by mass spectrometry: The ABRF glycoprotein research multi-institutional study 2012

(67)  Leymarie, Nancy a   Griffin, Paula J b   Jonscher, Karen c   Kolarich, Daniel d   Orlando, Ron e   McComb, Mark a   Zaia, Joseph a   Aguilan, Jennifer f   Alley, William R g   Altmann, Friederich h   Ball, Lauren E i   Basumallick, Lipika j   Bazemore Walker, Carthene R k   Behnken, Henning l   Blank, Michael A j   Brown, Kristy J m   Bunz, Svenja Catharina n   Cairo, Christopher W o,p   Cipollo, John F q   Daneshfar, Rambod o,p   more..


Author keywords

[No Author keywords available]

Indexed keywords

GALACTOSAMINE; GLUCOSAMINE; GLYCAN; GLYCOPEPTIDE; PROSTATE SPECIFIC ANTIGEN;

EID: 84885128443     PISSN: 15359476     EISSN: 15359484     Source Type: Journal    
DOI: 10.1074/mcp.M113.030643     Document Type: Article
Times cited : (101)

References (54)
  • 1
    • 84863860723 scopus 로고    scopus 로고
    • Evolutionary forces shaping the Golgi glycosylation machinery: Why cell surface glycans are universal to living cells. Cold Spring Harb. Perspect
    • Varki, A. (2011) Evolutionary forces shaping the Golgi glycosylation machinery: why cell surface glycans are universal to living cells. Cold Spring Harb. Perspect. Biol. 3, a005462
    • (2011) Biol. , vol.3
    • Varki, A.1
  • 2
    • 70349326274 scopus 로고    scopus 로고
    • The repertoire of glycan determinants in the human glycome
    • Cummings, R. D. (2009) The repertoire of glycan determinants in the human glycome. Mol. Biosyst. 5, 1087-1104
    • (2009) Mol. Biosyst. , vol.5 , pp. 1087-1104
    • Cummings, R.D.1
  • 4
    • 21744431575 scopus 로고    scopus 로고
    • The sweet and sour of cancer: Glycans as novel therapeutic targets
    • Fuster, M. M., Esko, J. D. (2005) The sweet and sour of cancer: glycans as novel therapeutic targets. Nat. Rev. Cancer 5, 526-542
    • (2005) Nat. Rev. Cancer , vol.5 , pp. 526-542
    • Fuster, M.M.1    Esko, J.D.2
  • 5
    • 40749118374 scopus 로고    scopus 로고
    • Current relevance of incomplete synthesis and neo-synthesis for cancer-associated alteration of carbohydrate determinants
    • Kannagi, R., Yin, J., Miyazaki, K., Izawa, M. (2008) Current relevance of incomplete synthesis and neo-synthesis for cancer-associated alteration of carbohydrate determinants. Biochim. Biophys. Acta 1780
    • (2008) Biochim. Biophys. Acta , pp. 1780
    • Kannagi, R.1    Yin, J.2    Miyazaki, K.3    Izawa, M.4
  • 6
    • 84857692860 scopus 로고    scopus 로고
    • Branched N-glycans and their implications for cell adhesion, signaling and clinical applications for cancer biomarkers and in therapeutics
    • Taniguchi, N., Korekane, H. (2011) Branched N-glycans and their implications for cell adhesion, signaling and clinical applications for cancer biomarkers and in therapeutics. BMB Rep. 44, 772-781
    • (2011) BMB Rep. , vol.44 , pp. 772-781
    • Taniguchi, N.1    Korekane, H.2
  • 7
    • 0027318961 scopus 로고
    • Biological roles of oligosaccharides: All of the theories are correct
    • Varki, A. (1993) Biological roles of oligosaccharides: all of the theories are correct. Glycobiology 3, 97-130
    • (1993) Glycobiology , vol.3 , pp. 97-130
    • Varki, A.1
  • 8
    • 0029989766 scopus 로고    scopus 로고
    • Possible roles of tumor-associated carbohydrate antigens
    • Fukuda, M. (1996) Possible roles of tumor-associated carbohydrate antigens. Cancer Res. 56, 2237-2244
    • (1996) Cancer Res. , vol.56 , pp. 2237-2244
    • Fukuda, M.1
  • 9
    • 84876318596 scopus 로고    scopus 로고
    • A simple integrated system for rapid analysis of sialic acid-containing N-glycopeptides from human serum
    • Zhu, J., Wang, F., Cheng, K., Dong, J., Sun, D., Chen, R., Wang, L., Ye, M., Zou, H. (2013) A simple integrated system for rapid analysis of sialic acid-containing N-glycopeptides from human serum. Proteomics 18
    • (2013) Proteomics , pp. 18
    • Zhu, J.1    Wang, F.2    Cheng, K.3    Dong, J.4    Sun, D.5    Chen, R.6    Wang, L.7    Ye, M.8    Zou, H.9
  • 10
    • 31444433687 scopus 로고    scopus 로고
    • Altered glycosylation in cancer: Sialic acids and sialyltransferases
    • Wang, P. H. (2005) Altered glycosylation in cancer: sialic acids and sialyltransferases. Journal of Cancer Molecules 1, 73-85
    • (2005) Journal of Cancer Molecules , vol.1 , pp. 73-85
    • Wang, P.H.1
  • 13
    • 0034844959 scopus 로고    scopus 로고
    • N-glycolylneuraminic acid in human tumours
    • Malykh, Y. N., Schauer, R., Shaw, L. (2001) N-glycolylneuraminic acid in human tumours. Biochimie (Paris) 83, 623-634
    • (2001) Biochimie (Paris) , vol.83 , pp. 623-634
    • Malykh, Y.N.1    Schauer, R.2    Shaw, L.3
  • 14
    • 0034856446 scopus 로고    scopus 로고
    • N-glycolylneuraminic acid deficiency in humans
    • Varki, A. (2001) N-glycolylneuraminic acid deficiency in humans. Biochimie (Paris) 83, 615-622
    • (2001) Biochimie (Paris) , vol.83 , pp. 615-622
    • Varki, A.1
  • 15
    • 74049112292 scopus 로고    scopus 로고
    • Historical overview of glycoanalysis
    • Bielik, A. M., Zaia, J. (2010) Historical overview of glycoanalysis. Methods Mol. Biol. 600, 9-30
    • (2010) Methods Mol. Biol. , vol.600 , pp. 9-30
    • Bielik, A.M.1    Zaia, J.2
  • 16
    • 84857043780 scopus 로고    scopus 로고
    • Differential characterization and classification of tissue specific glycosaminoglycans by tandem mass spectrometry and statistical methods
    • Leymarie, N., McComb, M. E., Naimy, H., Staples, G. O., Zaia, J. (2012) Differential characterization and classification of tissue specific glycosaminoglycans by tandem mass spectrometry and statistical methods. Int. J. Mass Spectrom. 312, 144-154
    • (2012) Int. J. Mass Spectrom. , vol.312 , pp. 144-154
    • Leymarie, N.1    McComb, M.E.2    Naimy, H.3    Staples, G.O.4    Zaia, J.5
  • 17
    • 78651105000 scopus 로고    scopus 로고
    • Mass spectrometry based glycoproteomics-from a proteomics perspective
    • Pan, S., Chen, R., Aebersold, R., Brentnall, T. A. (2011) Mass spectrometry based glycoproteomics-from a proteomics perspective. Mol. Cell. Prot. 10, 1-14
    • (2011) Mol. Cell. Prot. , vol.10 , pp. 1-14
    • Pan, S.1    Chen, R.2    Aebersold, R.3    Brentnall, T.A.4
  • 18
    • 84875984431 scopus 로고    scopus 로고
    • Analytical glycobiology at high sensitivity: Current approaches and directions
    • Novotny, M. V., Alley, W. R. Jr., Mann, B. F. (2013) Analytical glycobiology at high sensitivity: current approaches and directions. Glycoconj. J. 30, 89-117
    • (2013) Glycoconj. J. , vol.30 , pp. 89-117
    • Novotny, M.V.1    Alley Jr., W.R.2    Mann, B.F.3
  • 22
    • 84859861608 scopus 로고    scopus 로고
    • N-glycoproteomics: Mass spectrometry-based glycosylation site annotation
    • Pasing, Y., Sickmann, A., Lewandrowski, U. (2012) N-glycoproteomics: mass spectrometry-based glycosylation site annotation. Biol. Chem. 393, 249-258
    • (2012) Biol. Chem. , vol.393 , pp. 249-258
    • Pasing, Y.1    Sickmann, A.2    Lewandrowski, U.3
  • 26
    • 77950518665 scopus 로고    scopus 로고
    • Identification of prostate-specific antigen (PSA) isoforms in complex biological samples utilizing complementary platforms
    • Végvári, A., Rezeli, M., Welinder, C., Malm, J., Lilja, H., Marko-Varga, G., Laurell, T. (2010) Identification of prostate-specific antigen (PSA) isoforms in complex biological samples utilizing complementary platforms. J. Proteomics 73, 1137-1147
    • (2010) J. Proteomics , vol.73 , pp. 1137-1147
    • Végvári, G.A.1    Rezeli, M.2    Welinder, C.3    Malm, J.4    Lilja, H.5    Marko-Varga, G.6    Laurell, T.7
  • 27
    • 72849115827 scopus 로고    scopus 로고
    • Differential percentage of serum PSA subforms suggests a new way to improve prostate cancer diagnosis
    • Sarrats, A., Comet, J., Tabares, G., Ramirez, M., Aleixandre, R. N., de Lorens, R. (2010) Differential percentage of serum PSA subforms suggests a new way to improve prostate cancer diagnosis. Prostate 70, 1-9
    • (2010) Prostate , vol.70 , pp. 1-9
    • Sarrats, A.1    Comet, J.2    Tabares, G.3    Ramirez, M.4    Aleixandre, R.N.5    De Lorens, R.6
  • 28
    • 84863093442 scopus 로고    scopus 로고
    • Glycosylation of prostate specific antigen and its potential diagnostic applications
    • Vermassen, T., Speeckaert, M., Lumen, N., Rottey, S., Delanghe, J. (2012) Glycosylation of prostate specific antigen and its potential diagnostic applications. Clin. Chim. Acta 413, 1500-1505
    • (2012) Clin. Chim. Acta , vol.413 , pp. 1500-1505
    • Vermassen, T.1    Speeckaert, M.2    Lumen, N.3    Rottey, S.4    Delanghe, J.5
  • 29
    • 79957879496 scopus 로고    scopus 로고
    • Cell surface glycan-lectin interactions in tumor metastasis
    • Rambaruth, N. D., Dwek, M. V. (2011) Cell surface glycan-lectin interactions in tumor metastasis. Acta Histochem. 113, 591-600
    • (2011) Acta Histochem. , vol.113 , pp. 591-600
    • Rambaruth, N.D.1    Dwek, M.V.2
  • 30
    • 57449116570 scopus 로고    scopus 로고
    • The prospects of glycan biomarkers for the diagnosis of diseases
    • Lebrilla, C. B., An, H. J. (2009) The prospects of glycan biomarkers for the diagnosis of diseases. Mol. Biosyst. 5, 17-20
    • (2009) Mol. Biosyst. , vol.5 , pp. 17-20
    • Lebrilla, C.B.1    An, H.J.2
  • 32
    • 84862168794 scopus 로고    scopus 로고
    • Structural analysis of N-and O-glycans released from glycoproteins
    • Jensen, P. H., Karlsson, N. G., Kolarich, D., Packer, N. H. (2012) Structural analysis of N-and O-glycans released from glycoproteins. Nat. Protoc. 7, 1299-1310
    • (2012) Nat. Protoc. , vol.7 , pp. 1299-1310
    • Jensen, P.H.1    Karlsson, N.G.2    Kolarich, D.3    Packer, N.H.4
  • 33
    • 0036808537 scopus 로고    scopus 로고
    • FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification
    • Gattiker, A., Bienvenut, W. V., Bairoch, A., Gasteiger, E. (2002) FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification. Proteomics Clin. Appl. 2, 1435-1444
    • (2002) Proteomics Clin. Appl. , vol.2 , pp. 1435-1444
    • Gattiker, A.1    Bienvenut, W.V.2    Bairoch, A.3    Gasteiger, E.4
  • 34
    • 84861839252 scopus 로고    scopus 로고
    • GlycoPep grader: A web-based utility for assigning the composition of N-linked glycopeptides
    • Woodin, C. L., Hua, D., Maxon, M., Rebecchi, K. R., Go, E. P., Desaire, H. (2012) GlycoPep grader: a web-based utility for assigning the composition of N-linked glycopeptides. Anal. Chem. 84, 4821-4829
    • (2012) Anal. Chem. , vol.84 , pp. 4821-4829
    • Woodin, C.L.1    Hua, D.2    Maxon, M.3    Rebecchi, K.R.4    Go, E.P.5    Desaire, H.6
  • 35
    • 74049091330 scopus 로고    scopus 로고
    • Bioinformatics in glycomics: Glycan characterization with mass spectrometric data using SimGlycan
    • Apte, A., Meitei, N. S. (2010) Bioinformatics in glycomics: glycan characterization with mass spectrometric data using SimGlycan. Methods Mol. Biol. 600, 269-281
    • (2010) Methods Mol. Biol. , vol.600 , pp. 269-281
    • Apte, A.1    Meitei, N.S.2
  • 36
    • 79959682385 scopus 로고    scopus 로고
    • Improving confidence in detection and characterization of protein N-glycosylation sites and microheterogeneity
    • Mayampurath, A. M., Wu, Y., Segu, Z. M., Mechref, Y., Tang, H. (2011) Improving confidence in detection and characterization of protein N-glycosylation sites and microheterogeneity. Rapid Commun. Mass Spectrom. 25, 2007-2019
    • (2011) Rapid Commun. Mass Spectrom. , vol.25 , pp. 2007-2019
    • Mayampurath, A.M.1    Wu, Y.2    Segu, Z.M.3    Mechref, Y.4    Tang, H.5
  • 37
    • 43349084842 scopus 로고    scopus 로고
    • Using ProSight PTM and related tools for targeted protein identification and characterization with high mass accuracy tandem MS data
    • Leduc, R. D., Kelleher, N. L. (2007) Using ProSight PTM and related tools for targeted protein identification and characterization with high mass accuracy tandem MS data. Curr. Protoc. Bioinformatics Chapter 13, Unit 13 16
    • (2007) Curr. Protoc. Bioinformatics Chapter 13, Unit , vol.13 , pp. 16
    • Leduc, R.D.1    Kelleher, N.L.2
  • 39
    • 84861229412 scopus 로고    scopus 로고
    • Multivariate statistics for the differentiation of erythropoietin preparations based on intact glycoforms determined by CE-MS
    • Taichrib, A., Pioch, M., Neususs, C. (2012) Multivariate statistics for the differentiation of erythropoietin preparations based on intact glycoforms determined by CE-MS. Anal. Bioanal. Chem. 403, 797-805
    • (2012) Anal. Bioanal. Chem. , vol.403 , pp. 797-805
    • Taichrib, A.1    Pioch, M.2    Neususs, C.3
  • 40
    • 0016352339 scopus 로고
    • Applications of artificial intelligence to chemistry. Use of pattern recognition and cluster analysis to determine the pharmacological activity of some organic compounds
    • Chu, K. C. (1974) Applications of artificial intelligence to chemistry. Use of pattern recognition and cluster analysis to determine the pharmacological activity of some organic compounds. Anal. Chem. 46, 1181-1187
    • (1974) Anal. Chem. , vol.46 , pp. 1181-1187
    • Chu, K.C.1
  • 41
    • 78650796888 scopus 로고    scopus 로고
    • Simultaneous analysis of glycosylated and sialylated prostatespecific antigen revealing differential distribution of glycosylated prostate-specific antigen isoforms in prostate cancer tissues
    • Li, Y., Tian, Y., Rezai, T., Prakash, A., Lopez, M. F., Chan, D. W., Zhang, H. (2011) Simultaneous analysis of glycosylated and sialylated prostatespecific antigen revealing differential distribution of glycosylated prostate-specific antigen isoforms in prostate cancer tissues. Anal. Chem. 83, 241-245
    • (2011) Anal. Chem. , vol.83 , pp. 241-245
    • Li, Y.1    Tian, Y.2    Rezai, T.3    Prakash, A.4    Lopez, M.F.5    Chan, D.W.6    Zhang, H.7
  • 42
    • 84886617832 scopus 로고    scopus 로고
    • Statistical issues in quality control of proteomic analyses: Good experimental design and planning
    • Cairns, D. A. (2011) Statistical issues in quality control of proteomic analyses: good experimental design and planning. Proteomics Clin. Appl. 11
    • (2011) Proteomics Clin. Appl. , pp. 11
    • Cairns, D.A.1
  • 44
    • 77951833365 scopus 로고    scopus 로고
    • Prostate-specific antigen (PSA) is activated by KLK2 in prostate cancer ex vivo models and in prostate-targeted PSA/KLK2 double transgenic mice
    • Williams, S. A., Xu, Y., De Marzo, A. M., Isaacs, J. T., Denmeade, S. R. (2010) Prostate-specific antigen (PSA) is activated by KLK2 in prostate cancer ex vivo models and in prostate-targeted PSA/KLK2 double transgenic mice. Prostate 70, 788-796
    • (2010) Prostate , vol.70 , pp. 788-796
    • Williams, S.A.1    Xu, Y.2    De Marzo, A.M.3    Isaacs, J.T.4    Denmeade, S.R.5
  • 45
    • 4444231395 scopus 로고    scopus 로고
    • Carbohydrate structure and differential binding of prostate specific antigen to Maackia amurensis lectin between prostate cancer and benign prostate hypertrophy
    • Ohyama, C, Hosono, M., Nitta, K., Oh-eda, M., Yoshikawa, K., Habuchi, T., Arai, Y., Fukuda, M. (2004) Carbohydrate structure and differential binding of prostate specific antigen to Maackia amurensis lectin between prostate cancer and benign prostate hypertrophy. Glycobiology 14, 671-679
    • (2004) Glycobiology , vol.14 , pp. 671-679
    • Ohyama, C.1    Hosono, M.2    Nitta, K.3    Oh-eda, M.4    Yoshikawa, K.5    Habuchi, T.6    Arai, Y.7    Fukuda, M.8
  • 46
    • 37549016762 scopus 로고    scopus 로고
    • Oligosaccharide profiles of the prostate specific antigen in free and complexed forms from the prostate cancer patient serum and in seminal plasma: A glycopeptide approach
    • Tajiri, M., Ohyama, C, Wada, Y. (2008) Oligosaccharide profiles of the prostate specific antigen in free and complexed forms from the prostate cancer patient serum and in seminal plasma: a glycopeptide approach. Glycobiology 18
    • (2008) Glycobiology , pp. 18
    • Tajiri, M.1    Ohyama, C.2    Wada, Y.3
  • 49
    • 0025976986 scopus 로고
    • NMR investigations of the N-linked oligosaccharides at individual glycosylation sites of human lutropin
    • Weisshaar, G., Hiyama, J., Renwick, A. G., Nimtz, M. (1991) NMR investigations of the N-linked oligosaccharides at individual glycosylation sites of human lutropin. Eur. J. Biochem. 195, 257-268
    • (1991) Eur. J. Biochem. , vol.195 , pp. 257-268
    • Weisshaar, G.1    Hiyama, J.2    Renwick, A.G.3    Nimtz, M.4
  • 50
    • 0027052198 scopus 로고
    • Heterogeneity of bovine lactotransferrin glycans. Characterization of alpha-D-Galp-(1→3)-beta-D-Gal-and alpha-NeuAc-(2→6)-beta-D-GalpNAc- (1→4) - Beta-D-GlcNAc-substituted N-linked glycans
    • Coddeville, B., Strecker, G., Wieruszeski, J. M., Vliegenthart, J. F., van Halbeek, H., Peter-Katalinic, J., Egge, H., Spik, G. (1992) Heterogeneity of bovine lactotransferrin glycans. Characterization of alpha-D-Galp-(1→3)- beta-D-Gal-and alpha-NeuAc-(2→6)-beta-D-GalpNAc-(1→4) - beta-D-GlcNAc-substituted N-linked glycans. Carbohydr. Res. 236, 145-164
    • (1992) Carbohydr. Res. , vol.236 , pp. 145-164
    • Coddeville, B.1    Strecker, G.2    Wieruszeski, J.M.3    Vliegenthart, J.F.4    Van Halbeek, H.5    Peter-Katalinic, J.6    Egge, H.7    Spik, G.8
  • 51
    • 0027718176 scopus 로고
    • Novel Asn-linked oligosaccharides terminating in GalNAc beta (1→4) [Fuc alpha (1→3)]GlcNAc beta (1→.) are present in recombinant human protein C expressed in human kidney 293 cells
    • Yan, S. B., Chao, Y. B., van Halbeek, H. (1993) Novel Asn-linked oligosaccharides terminating in GalNAc beta (1→4) [Fuc alpha (1→3)]GlcNAc beta (1→.) are present in recombinant human protein C expressed in human kidney 293 cells. Glycobiology 3, 597-608
    • (1993) Glycobiology , vol.3 , pp. 597-608
    • Yan, S.B.1    Chao, Y.B.2    Van Halbeek, H.3
  • 53
    • 0038618896 scopus 로고    scopus 로고
    • Altered glycosylation pattern allows the distinction between prostate-specific antigen (PSA) from normal and tumor origins
    • Peracaula, R., Tabares, G., Royle, L, Harvey, D. J., Dwek, R. A., Rudd, P. M., de Llorens, R. (2003) Altered glycosylation pattern allows the distinction between prostate-specific antigen (PSA) from normal and tumor origins. Glycobiology 13, 457-470
    • (2003) Glycobiology , vol.13 , pp. 457-470
    • Peracaula, R.1    Tabares, G.2    Royle, L.3    Harvey, D.J.4    Dwek, R.A.5    Rudd, P.M.6    De Llorens, R.7
  • 54
    • 0035895751 scopus 로고    scopus 로고
    • Structural characteristics of the N-glycans of two isoforms of prostate-specific antigens purified from human seminal fluid
    • Okada, T., Sato, Y., Kobayashi, N., Sumida, K., Satomura, S., Matsuura, S., Takasaki, M., Endo, T. (2001) Structural characteristics of the N-glycans of two isoforms of prostate-specific antigens purified from human seminal fluid. Biochim. Biophys. Acta 1525, 149-160
    • (2001) Biochim. Biophys. Acta , vol.1525 , pp. 149-160
    • Okada, T.1    Sato, Y.2    Kobayashi, N.3    Sumida, K.4    Satomura, S.5    Matsuura, S.6    Takasaki, M.7    Endo, T.8


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