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Volumn 14, Issue 1, 2014, Pages 1-18

Genome-wide annotation of the soybean WRKY family and functional characterization of genes involved in response to Phakopsora pachyrhizi infection

Author keywords

Asian Soybean Rust; Functional analysis; Fungus resistance; Genetic transformation; Glycine max; Transcription factors

Indexed keywords

FUNGI; GLYCINE MAX; PHAKOPSORA PACHYRHIZI;

EID: 84908128702     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/s12870-014-0236-0     Document Type: Article
Times cited : (82)

References (95)
  • 1
    • 34548371262 scopus 로고    scopus 로고
    • Evaluation of soybean germplasm for resistance toPhakopsora pachyrhizi
    • Miles MR, Frederick RD, Hartman GL: Evaluation of soybean germplasm for resistance toPhakopsora pachyrhizi.Plant Health Prog 2006, doi:10.1094/PHP-2006-0104-01-RS.
    • (2006) Plant Health Prog
    • Miles, M.R.1    Frederick, R.D.2    Hartman, G.L.3
  • 2
    • 84971056431 scopus 로고
    • Effect of rust (Phakopsora pachyrhizi) on soybean yield and quality in south-eastern Queensland
    • Ogle HJ, Byth DE, McLean R. Effect of rust (Phakopsora pachyrhizi) on soybean yield and quality in south-eastern Queensland. Australian J Agric Res 1979, 30:883-893. 10.1071/AR9790883.
    • (1979) Australian J Agric Res , vol.30 , pp. 883-893
    • Ogle, H.J.1    Byth, D.E.2    McLean, R.3
  • 3
    • 34047141088 scopus 로고
    • Soybean Rust
    • American Phytopathological Society, St. Paul, Minnesota
    • Bromfield KR. Soybean Rust. Monograph No. 11 1984, American Phytopathological Society, St. Paul, Minnesota.
    • (1984) Monograph No. 11
    • Bromfield, K.R.1
  • 5
    • 18944384046 scopus 로고
    • Resistance to Soybean Rust and mode of inheritance
    • Bromfield KR, Hartwig EE. Resistance to Soybean Rust and mode of inheritance. Crop Sci 1980, 20:254-255. 10.2135/cropsci1980.0011183X002000020026x.
    • (1980) Crop Sci , vol.20 , pp. 254-255
    • Bromfield, K.R.1    Hartwig, E.E.2
  • 6
    • 34547102122 scopus 로고
    • The breeding of 'Tainung 3' soybean
    • Cheng YW, Chan KL. The breeding of 'Tainung 3' soybean. J Taiwan Agric Res 1968, 17:30-35.
    • (1968) J Taiwan Agric Res , vol.17 , pp. 30-35
    • Cheng, Y.W.1    Chan, K.L.2
  • 7
    • 34547098268 scopus 로고
    • Screening of soybean breeding lines for resistance to soybean rust (Phakopsora pachyrhizi Sydow)
    • Hidayat OO, Somaatmadja S. Screening of soybean breeding lines for resistance to soybean rust (Phakopsora pachyrhizi Sydow). Soybean Rust Newsl 1977, 1:9-22.
    • (1977) Soybean Rust Newsl , vol.1 , pp. 9-22
    • Hidayat, O.O.1    Somaatmadja, S.2
  • 8
    • 1642387758 scopus 로고
    • Breeding for resistance to Soybean Rust in India
    • College of Agriculture, University of Illinois at Urbana-Champaign, Urbana, IL, Ford RE, Sinclair JB
    • Singh BB, Thapliyal PN. Breeding for resistance to Soybean Rust in India. Rust of Soybean: The Problem and Research Needs 1977, 62-65. College of Agriculture, University of Illinois at Urbana-Champaign, Urbana, IL, Ford RE, Sinclair JB.
    • (1977) Rust of Soybean: The Problem and Research Needs , pp. 62-65
    • Singh, B.B.1    Thapliyal, P.N.2
  • 9
    • 18944393118 scopus 로고
    • Inheritance in resistance to rust (Phakopsora pachyrhizi) in soybeans
    • McLean RJ, Byth DE. Inheritance in resistance to rust (Phakopsora pachyrhizi) in soybeans. Aust J Agric Res 1980, 31:951-956. 10.1071/AR9800951.
    • (1980) Aust J Agric Res , vol.31 , pp. 951-956
    • McLean, R.J.1    Byth, D.E.2
  • 10
    • 1642379615 scopus 로고
    • Relationships among three genes conferring specific resistance to rust in soybeans
    • Hartwig EE, Bromfield KR. Relationships among three genes conferring specific resistance to rust in soybeans. Crop Sci 1983, 23:237-239. 10.2135/cropsci1983.0011183X002300020012x.
    • (1983) Crop Sci , vol.23 , pp. 237-239
    • Hartwig, E.E.1    Bromfield, K.R.2
  • 11
    • 18044388126 scopus 로고
    • Identification of a fourth major gene conferring resistance to soybean rust
    • Hartwig EE. Identification of a fourth major gene conferring resistance to soybean rust. Crop Sci 1986, 26:1135-1136. 10.2135/cropsci1986.0011183X002600060010x.
    • (1986) Crop Sci , vol.26 , pp. 1135-1136
    • Hartwig, E.E.1
  • 12
    • 34247184723 scopus 로고    scopus 로고
    • Mapping and confirmation of the 'Hyuuga' red-brown lesion resistance gene for Asian Soybean Rust
    • Monteros MJ, Missaoui AM, Phillips DV, Walker DR, Boerma HR. Mapping and confirmation of the 'Hyuuga' red-brown lesion resistance gene for Asian Soybean Rust. Crop Sci 2007, 47:829-834. 10.2135/cropsci06.07.0462.
    • (2007) Crop Sci , vol.47 , pp. 829-834
    • Monteros, M.J.1    Missaoui, A.M.2    Phillips, D.V.3    Walker, D.R.4    Boerma, H.R.5
  • 13
    • 48149087075 scopus 로고    scopus 로고
    • Molecular mapping of soybean rust (Phakopsora pachyrhizi) resistance genes: discovery of a novel locus and alleles
    • 18506417
    • Garcia A, Calvo ES, de Souza KRA, Harada A, Hiromoto DM, Vieira LG. Molecular mapping of soybean rust (Phakopsora pachyrhizi) resistance genes: discovery of a novel locus and alleles. Theor Appl Genet 2008, 117:545-553. 10.1007/s00122-008-0798-z, 18506417.
    • (2008) Theor Appl Genet , vol.117 , pp. 545-553
    • Garcia, A.1    Calvo, E.S.2    de Souza, K.R.A.3    Harada, A.4    Hiromoto, D.M.5    Vieira, L.G.6
  • 14
    • 84864488255 scopus 로고    scopus 로고
    • Identification of a new soybean rust resistance gene in PI 567102B
    • 22374138
    • Li S, Smith JR, Ray JD, Frederick RD. Identification of a new soybean rust resistance gene in PI 567102B. Theor Appl Genet 2012, 125(1):133-142. 10.1007/s00122-012-1821-y, 22374138.
    • (2012) Theor Appl Genet , vol.125 , Issue.1 , pp. 133-142
    • Li, S.1    Smith, J.R.2    Ray, J.D.3    Frederick, R.D.4
  • 18
    • 34548295505 scopus 로고    scopus 로고
    • Gene expression analysis in soybean in response to the causal agent of Asian soybean rust (Phakopsora pachyrhizi Sydow) in an early growth stage
    • 17318271
    • Panthee DR, Yuan JS, Wright DL, Marois JJ, Mailhot D, Stewart CN. Gene expression analysis in soybean in response to the causal agent of Asian soybean rust (Phakopsora pachyrhizi Sydow) in an early growth stage. Funct Integr Genomics 2007, 7:291-301. 10.1007/s10142-007-0045-8, 17318271.
    • (2007) Funct Integr Genomics , vol.7 , pp. 291-301
    • Panthee, D.R.1    Yuan, J.S.2    Wright, D.L.3    Marois, J.J.4    Mailhot, D.5    Stewart, C.N.6
  • 19
    • 58149215548 scopus 로고    scopus 로고
    • Differential expression of genes in soybean in response to the causal agent of Asian soybean rust (Phakopsora pachyrhizi Sydow) is soybean growth stage-specific
    • 18853130
    • Panthee DR, Marois JJ, Wright DL, Narvaez D, Yuan JS, Stewart CN. Differential expression of genes in soybean in response to the causal agent of Asian soybean rust (Phakopsora pachyrhizi Sydow) is soybean growth stage-specific. Theor Appl Genet 2009, 118:359-370. 10.1007/s00122-008-0905-1, 18853130.
    • (2009) Theor Appl Genet , vol.118 , pp. 359-370
    • Panthee, D.R.1    Marois, J.J.2    Wright, D.L.3    Narvaez, D.4    Yuan, J.S.5    Stewart, C.N.6
  • 20
    • 52349115452 scopus 로고    scopus 로고
    • Expression patterns in soybean resistant to Phakopsora pachyrhizi reveal the importance of peroxidases and lipoxygenases
    • 18414911
    • Choi JJ, Alkharouf NW, Schneider KT, Matthews BF, Frederick RD. Expression patterns in soybean resistant to Phakopsora pachyrhizi reveal the importance of peroxidases and lipoxygenases. Funct Integr Genomics 2008, 8:341-359. 10.1007/s10142-008-0080-0, 18414911.
    • (2008) Funct Integr Genomics , vol.8 , pp. 341-359
    • Choi, J.J.1    Alkharouf, N.W.2    Schneider, K.T.3    Matthews, B.F.4    Frederick, R.D.5
  • 21
    • 77954311939 scopus 로고    scopus 로고
    • Transcriptome analysis of a compatible response by Glycine max to Phakopsora pachyrhizi infection
    • Tremblay A, Hosseini P, Alkharouf N, Li S, Matthewsa BF. Transcriptome analysis of a compatible response by Glycine max to Phakopsora pachyrhizi infection. Plant Sci 2010, 179:183-193. 10.1016/j.plantsci.2010.04.011.
    • (2010) Plant Sci , vol.179 , pp. 183-193
    • Tremblay, A.1    Hosseini, P.2    Alkharouf, N.3    Li, S.4    Matthewsa, B.F.5
  • 23
    • 68249143317 scopus 로고    scopus 로고
    • The role of WRKY transcription factors in plant immunity
    • 19420325
    • Pandey SP, Somssich IE. The role of WRKY transcription factors in plant immunity. Plant Physiol 2009, 150:1648-1655. 10.1104/pp.109.138990, 19420325.
    • (2009) Plant Physiol , vol.150 , pp. 1648-1655
    • Pandey, S.P.1    Somssich, I.E.2
  • 24
    • 0034192491 scopus 로고    scopus 로고
    • The WRKY superfamily of plant transcription factors
    • 10785665
    • Eulgem T, Rushton PJ, Robatzek S, Somssich IE. The WRKY superfamily of plant transcription factors. Trends Plant Sci 2000, 5:199-206. 10.1016/S1360-1385(00)01600-9, 10785665.
    • (2000) Trends Plant Sci , vol.5 , pp. 199-206
    • Eulgem, T.1    Rushton, P.J.2    Robatzek, S.3    Somssich, I.E.4
  • 25
    • 18744374630 scopus 로고    scopus 로고
    • Annotations and Functional Analyses of the Rice WRKY Gene Superfamily Reveal Positive and Negative Regulators of Abscisic Acid Signaling in Aleurone Cells
    • 15618416
    • Xie Z, Zhang ZL, Zou X, Huang J, Ruas P, Thompson D, Shen QJ. Annotations and Functional Analyses of the Rice WRKY Gene Superfamily Reveal Positive and Negative Regulators of Abscisic Acid Signaling in Aleurone Cells. Plant Physiol 2005, 137:176-189. 10.1104/pp.104.054312, 15618416.
    • (2005) Plant Physiol , vol.137 , pp. 176-189
    • Xie, Z.1    Zhang, Z.L.2    Zou, X.3    Huang, J.4    Ruas, P.5    Thompson, D.6    Shen, Q.J.7
  • 26
    • 14344250098 scopus 로고    scopus 로고
    • The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants
    • Zhang Y, Wang L. The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants. BMC Evolutionary Biol 2005, 5:1-12. 10.1186/1471-2148-5-1.
    • (2005) BMC Evolutionary Biol , vol.5 , pp. 1-12
    • Zhang, Y.1    Wang, L.2
  • 27
    • 18244374199 scopus 로고    scopus 로고
    • The WRKY family of transcription factors in rice and arabidopsis and their origins
    • 16106749
    • Wu KL, Guo ZJ, Wang HH, Li J. The WRKY family of transcription factors in rice and arabidopsis and their origins. DNA Res 2005, 12:9-26. 10.1093/dnares/12.1.9, 16106749.
    • (2005) DNA Res , vol.12 , pp. 9-26
    • Wu, K.L.1    Guo, Z.J.2    Wang, H.H.3    Li, J.4
  • 28
    • 34347223614 scopus 로고    scopus 로고
    • The WRKY Gene Family in Rice (Oryza sativa)
    • Ross CA, Liu Y, Shen QJ. The WRKY Gene Family in Rice (Oryza sativa). J Integr Plant Biol 2007, 49:827-842. 10.1111/j.1744-7909.2007.00504.x.
    • (2007) J Integr Plant Biol , vol.49 , pp. 827-842
    • Ross, C.A.1    Liu, Y.2    Shen, Q.J.3
  • 29
    • 84862494693 scopus 로고    scopus 로고
    • Genome-wide survey and characterization of the WRKY gene family in Populus trichocarpa
    • He HS, Dong Q, Shao YH, Jiang HY, Zhu SW, Cheng B, Xiang Y: Genome-wide survey and characterization of the WRKY gene family in Populus trichocarpa.Plant Cell Rep 2012, doi:10.1007/s00299-012-1241-0.
    • (2012) Plant Cell Rep
    • He, H.S.1    Dong, Q.2    Shao, Y.H.3    Jiang, H.Y.4    Zhu, S.W.5    Cheng, B.6    Xiang, Y.7
  • 30
    • 84902988373 scopus 로고    scopus 로고
    • Genome-wide evolutionary characterization and expression analyses of wrky family genes in brachypodium distachyon
    • Wen F, Zhu H, Li P, Jiang M, Mao W, Ong C, Chu Z: Genome-wide evolutionary characterization and expression analyses of wrky family genes in brachypodium distachyon.DNA Res 2014, 1-13. doi:10.1093/dnares/dst060.
    • (2014) DNA Res , pp. 1-13
    • Wen, F.1    Zhu, H.2    Li, P.3    Jiang, M.4    Mao, W.5    Ong, C.6    Chu, Z.7
  • 31
    • 84901260761 scopus 로고    scopus 로고
    • Identification and characterization of the grape WRKY family
    • Zhang Y, Feng J. Identification and characterization of the grape WRKY family. BioMed Research International 2014, Article ID 787680:14.
    • (2014) BioMed Research International , pp. 14
    • Zhang, Y.1    Feng, J.2
  • 33
    • 4444340698 scopus 로고    scopus 로고
    • WRKY transcription factors: from DNA binding towards biological function
    • 15337090
    • Ülker B, Somssich IE. WRKY transcription factors: from DNA binding towards biological function. Curr Opin Plant Biol 2004, 7:491-498. 10.1016/j.pbi.2004.07.012, 15337090.
    • (2004) Curr Opin Plant Biol , vol.7 , pp. 491-498
    • Ülker, B.1    Somssich, I.E.2
  • 35
    • 0035524776 scopus 로고    scopus 로고
    • Role of conserved residues of the WRKY domain in the DNA-binding of tobacco WRKY family proteins
    • Maeo K, Hayashi S, Kojima-Suzuki H, Morikami A, Nakamura K. Role of conserved residues of the WRKY domain in the DNA-binding of tobacco WRKY family proteins. Biosci Biotech Biochem 2001, 65:2428-2436. 10.1271/bbb.65.2428.
    • (2001) Biosci Biotech Biochem , vol.65 , pp. 2428-2436
    • Maeo, K.1    Hayashi, S.2    Kojima-Suzuki, H.3    Morikami, A.4    Nakamura, K.5
  • 36
    • 34547219390 scopus 로고    scopus 로고
    • Networks of WRKY transcription factors in defense signaling
    • 17644023
    • Eulgem T, Somssich IE. Networks of WRKY transcription factors in defense signaling. Curr Opin Plant Biol 2007, 10:366-371. 10.1016/j.pbi.2007.04.020, 17644023.
    • (2007) Curr Opin Plant Biol , vol.10 , pp. 366-371
    • Eulgem, T.1    Somssich, I.E.2
  • 37
    • 48149089804 scopus 로고    scopus 로고
    • Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function
    • 18523729
    • Ciolkowski I, Wanke D, Birkenbihl RP, Somssich IE. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function. Plant Mol Biol 2008, 68:81-92. 10.1007/s11103-008-9353-1, 18523729.
    • (2008) Plant Mol Biol , vol.68 , pp. 81-92
    • Ciolkowski, I.1    Wanke, D.2    Birkenbihl, R.P.3    Somssich, I.E.4
  • 38
    • 43449095701 scopus 로고    scopus 로고
    • Soybean WRKY-type transcription factor genes, GmWRKY13, GmWRKY21, and GmWRKY54, confer differential tolerance to abiotic stresses in transgenic Arabidopsis plants
    • 18384508
    • Zhou Q, Tian A, Zou H, Xie Z, Lei G, Huang J, Wang C, Wang H, Zhang J, Chen S. Soybean WRKY-type transcription factor genes, GmWRKY13, GmWRKY21, and GmWRKY54, confer differential tolerance to abiotic stresses in transgenic Arabidopsis plants. Plant Biotechnol J 2008, 6:486-503. 10.1111/j.1467-7652.2008.00336.x, 18384508.
    • (2008) Plant Biotechnol J , vol.6 , pp. 486-503
    • Zhou, Q.1    Tian, A.2    Zou, H.3    Xie, Z.4    Lei, G.5    Huang, J.6    Wang, C.7    Wang, H.8    Zhang, J.9    Chen, S.10
  • 39
    • 84864324616 scopus 로고    scopus 로고
    • Genome-wide analysis of WRKY transcription factors in Solanum lycopersicum
    • 22570076
    • Huang S, Gao Y, Liu J, Peng X, Niu X, Fei Z, Cao S, Liu Y. Genome-wide analysis of WRKY transcription factors in Solanum lycopersicum. Mol Genet Genomics 2012, 287:495-513. 10.1007/s00438-012-0696-6, 22570076.
    • (2012) Mol Genet Genomics , vol.287 , pp. 495-513
    • Huang, S.1    Gao, Y.2    Liu, J.3    Peng, X.4    Niu, X.5    Fei, Z.6    Cao, S.7    Liu, Y.8
  • 40
    • 78651337578 scopus 로고    scopus 로고
    • PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database
    • Zhang H, Jin JP, Tang L, Zhao Y, Gu XC, Gao G, Luo JC. PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database. Nucleic Acids Res 2011, 39:1114-1117. 10.1093/nar/gkq1141.
    • (2011) Nucleic Acids Res , vol.39 , pp. 1114-1117
    • Zhang, H.1    Jin, J.P.2    Tang, L.3    Zhao, Y.4    Gu, X.C.5    Gao, G.6    Luo, J.C.7
  • 42
    • 84908143561 scopus 로고    scopus 로고
    • Soybean trancription factor knowledge base. []., http://www.igece.org/Soybean_TF/
  • 43
    • 56349161123 scopus 로고    scopus 로고
    • Isolation and functional analysis of transcription factor GmWRKY57b from soybean
    • Zhang L, Wang X, Bi Y, Zhang C, Fan Y, Lei W. Isolation and functional analysis of transcription factor GmWRKY57b from soybean. Chin Sci Bulletin 2008, 53:3538-3545. 10.1007/s11434-008-0483-2.
    • (2008) Chin Sci Bulletin , vol.53 , pp. 3538-3545
    • Zhang, L.1    Wang, X.2    Bi, Y.3    Zhang, C.4    Fan, Y.5    Lei, W.6
  • 44
    • 84874590730 scopus 로고    scopus 로고
    • Identification of a pathogen-induced Glycine max transcription factor GmWRKY1
    • Kang SG, Park E, Do KS. Identification of a pathogen-induced Glycine max transcription factor GmWRKY1. Plant Pathol J 2009, 25:381-388. 10.5423/PPJ.2009.25.4.381.
    • (2009) Plant Pathol J , vol.25 , pp. 381-388
    • Kang, S.G.1    Park, E.2    Do, K.S.3
  • 45
    • 84908143560 scopus 로고    scopus 로고
    • IGECE: ., http://systemsbiology.usm.edu/BrachyWRKY/WRKY/Soybean.html
  • 46
    • 84908143559 scopus 로고    scopus 로고
    • LGE genômica e expressão. []., http://www.lge.ibi.unicamp.br/soja/
  • 48
    • 75549088763 scopus 로고    scopus 로고
    • SoyBase, the USDA-ARS soybean genetics and genomics database
    • 20008513
    • Grant D, Nelson R, Cannon S, Shoemaker R. SoyBase, the USDA-ARS soybean genetics and genomics database. Nucleic Acids Res 2010, 38(Database issue):D843-846. 10.1093/nar/gkp798, 20008513.
    • (2010) Nucleic Acids Res , vol.38 , Issue.DATABASE ISSUE , pp. D843-846
    • Grant, D.1    Nelson, R.2    Cannon, S.3    Shoemaker, R.4
  • 51
    • 67651039811 scopus 로고    scopus 로고
    • Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition
    • Freeling M. Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition. Annual Rev Plant Biol 2009, 60:433-453. 10.1146/annurev.arplant.043008.092122.
    • (2009) Annual Rev Plant Biol , vol.60 , pp. 433-453
    • Freeling, M.1
  • 52
    • 77954345059 scopus 로고    scopus 로고
    • Genome wide classification and evolutionary analysis of the bHLH family of transcription factors in Arabidopsis, poplar, rice, moss and algae
    • 20472752
    • Carretero-Paulet L, Galstyan A, Roig-Villanova I, Martinez-Garcia JF, Bilbao-Castro JR, Robertson DL. Genome wide classification and evolutionary analysis of the bHLH family of transcription factors in Arabidopsis, poplar, rice, moss and algae. Plant Physiol 2010, 153:1398-1412. 10.1104/pp.110.153593, 20472752.
    • (2010) Plant Physiol , vol.153 , pp. 1398-1412
    • Carretero-Paulet, L.1    Galstyan, A.2    Roig-Villanova, I.3    Martinez-Garcia, J.F.4    Bilbao-Castro, J.R.5    Robertson, D.L.6
  • 55
    • 44249092978 scopus 로고    scopus 로고
    • Phylogenetic and comparative gene expression analysis of barley (Hordeum vulgare) WRKY transcription factor family reveals putatively retained functions between monocots and dicots
    • 18442363
    • Mangelsen E, Kilian J, Berendzen KW, Kolukisaoglu UH, Harter K, Jansson C, Wanke D. Phylogenetic and comparative gene expression analysis of barley (Hordeum vulgare) WRKY transcription factor family reveals putatively retained functions between monocots and dicots. BMC Genomics 2008, 9:194-211. 10.1186/1471-2164-9-194, 18442363.
    • (2008) BMC Genomics , vol.9 , pp. 194-211
    • Mangelsen, E.1    Kilian, J.2    Berendzen, K.W.3    Kolukisaoglu, U.H.4    Harter, K.5    Jansson, C.6    Wanke, D.7
  • 56
    • 48149106598 scopus 로고    scopus 로고
    • A novel WRKY transcription factor is required for induction of PR-1a gene expression by salicylic acid and bacterial elicitors
    • 18263781
    • van Verk MC, Pappaioannou D, Neeleman L, Bol JF, Linthorst HJM. A novel WRKY transcription factor is required for induction of PR-1a gene expression by salicylic acid and bacterial elicitors. Plant Physiol 2008, 146:1983-1995. 10.1104/pp.107.112789, 18263781.
    • (2008) Plant Physiol , vol.146 , pp. 1983-1995
    • van Verk, M.C.1    Pappaioannou, D.2    Neeleman, L.3    Bol, J.F.4    Linthorst, H.J.M.5
  • 57
    • 67650133604 scopus 로고    scopus 로고
    • Identification and expression analysis of WRKY transcription factor in canola (Brassica napus L.) in response to fungal pathogens and hormone treatments
    • 19493335
    • Yang B, Jiang Y, Rahman MH, Deyholos MK, Kav NNV. Identification and expression analysis of WRKY transcription factor in canola (Brassica napus L.) in response to fungal pathogens and hormone treatments. BMC Plant Biol 2009, 9:68-87. 10.1186/1471-2229-9-68, 19493335.
    • (2009) BMC Plant Biol , vol.9 , pp. 68-87
    • Yang, B.1    Jiang, Y.2    Rahman, M.H.3    Deyholos, M.K.4    Kav, N.N.V.5
  • 58
    • 77649336854 scopus 로고    scopus 로고
    • Expression analyses indicate the involvement of sunflower WRKY transcription factors in stress responses, and phylogenetic reconstructions reveal the existence of a novel clade in the Asteraceae
    • Giacomelli JI, Ribichich KF, Dezar CA, Chan RL. Expression analyses indicate the involvement of sunflower WRKY transcription factors in stress responses, and phylogenetic reconstructions reveal the existence of a novel clade in the Asteraceae. Plant Sci 2010, 178:398-410. 10.1016/j.plantsci.2010.02.008.
    • (2010) Plant Sci , vol.178 , pp. 398-410
    • Giacomelli, J.I.1    Ribichich, K.F.2    Dezar, C.A.3    Chan, R.L.4
  • 61
    • 33745466148 scopus 로고    scopus 로고
    • Physical and functional interactions between pathogen-induced Arabidopsis WRKY18, WRKY40, and WRKY60 transcription factors
    • 16603654
    • Xu X, Chen C, Fan B, Chen Z. Physical and functional interactions between pathogen-induced Arabidopsis WRKY18, WRKY40, and WRKY60 transcription factors. Plant Cell 2006, 18:1310-1326. 10.1105/tpc.105.037523, 16603654.
    • (2006) Plant Cell , vol.18 , pp. 1310-1326
    • Xu, X.1    Chen, C.2    Fan, B.3    Chen, Z.4
  • 62
    • 78650217076 scopus 로고    scopus 로고
    • Roles of arabidopsis WRKY18, WRKY40 and WRKY60 transcription factors in plant responses to abscisic acid and abiotic stress
    • 21167067
    • Chen HC, Lai Z, Shi J, Xiao Y, Chen Z, Xu X. Roles of arabidopsis WRKY18, WRKY40 and WRKY60 transcription factors in plant responses to abscisic acid and abiotic stress. BMC Plant Biol 2010, 10:281-296. 10.1186/1471-2229-10-281, 21167067.
    • (2010) BMC Plant Biol , vol.10 , pp. 281-296
    • Chen, H.C.1    Lai, Z.2    Shi, J.3    Xiao, Y.4    Chen, Z.5    Xu, X.6
  • 63
    • 0034914973 scopus 로고    scopus 로고
    • Evidence for an Important Role of WRKY DNA Binding Proteins in the Regulation of NPR1 Gene Expression
    • 11449049
    • Yu D, Chen C, Chen Z. Evidence for an Important Role of WRKY DNA Binding Proteins in the Regulation of NPR1 Gene Expression. Plant Cell 2001, 13:1527-1539. 10.1105/tpc.13.7.1527, 11449049.
    • (2001) Plant Cell , vol.13 , pp. 1527-1539
    • Yu, D.1    Chen, C.2    Chen, Z.3
  • 64
    • 33751415153 scopus 로고    scopus 로고
    • A Genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants
    • Wang D, Amornsiripanitch N, Dong X. A Genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants. Plos Pathog 2006, 2:1042-1050. 10.1371/journal.ppat.0020123.
    • (2006) Plos Pathog , vol.2 , pp. 1042-1050
    • Wang, D.1    Amornsiripanitch, N.2    Dong, X.3
  • 65
    • 0035983656 scopus 로고    scopus 로고
    • Potentiation of developmentally regulated plant defense response by atwrky18, a pathogen-induced arabidopsis transcription factor
    • 12068113
    • Chen C, Chen Z. potentiation of developmentally regulated plant defense response by atwrky18, a pathogen-induced arabidopsis transcription factor. Plant Physiol 2002, 129:706-716. 10.1104/pp.001057, 12068113.
    • (2002) Plant Physiol , vol.129 , pp. 706-716
    • Chen, C.1    Chen, Z.2
  • 67
    • 0034111507 scopus 로고    scopus 로고
    • Chemical-inducible systems for regulated expression of plant genes
    • 10753773
    • Zuo J, Chua N. Chemical-inducible systems for regulated expression of plant genes. Curr Opin Biotechnol 2000, 11:146-151. 10.1016/S0958-1669(00)00073-2, 10753773.
    • (2000) Curr Opin Biotechnol , vol.11 , pp. 146-151
    • Zuo, J.1    Chua, N.2
  • 69
    • 84908119523 scopus 로고    scopus 로고
    • The GENSCAN Web Server at MIT. []., http://genes.mit.edu/GENSCAN.html
  • 70
    • 84908127555 scopus 로고    scopus 로고
    • FEGENESH. []., http://linux1.softberry.com/
  • 71
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997, 24:4876-4882. 10.1093/nar/25.24.4876.
    • (1997) Nucleic Acids Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 72
    • 84908127554 scopus 로고    scopus 로고
    • FancyGENE. []., http://bio.ieo.eu/fancygene/
  • 73
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • 15034147
    • Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32:1792-1797. 10.1093/nar/gkh340, 15034147.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 74
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
    • 21546353
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evol 2011, 28:2731-2739. 10.1093/molbev/msr121, 21546353.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 75
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • 17996036
    • Drummond AJ, Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 2007, 7:214. 10.1186/1471-2148-7-214, 17996036.
    • (2007) BMC Evol Biol , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 76
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: selection of best-fit models of protein evolution
    • Abascal F, Zardoya R, Posada D. ProtTest: selection of best-fit models of protein evolution. Bioinforma 2005, 21:2104-2105. 10.1093/bioinformatics/bti263.
    • (2005) Bioinforma , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 78
    • 58149293709 scopus 로고    scopus 로고
    • SuperSAGE: A Modern Platform for Genome-Wide Quantitative Transcript Profiling
    • 18855689
    • Matsumura H, Krueger DH, Kahl G, Terauchi R. SuperSAGE: A Modern Platform for Genome-Wide Quantitative Transcript Profiling. Curr Pharm Biotechnol 2008, 9:368-374. 10.2174/138920108785915157, 18855689.
    • (2008) Curr Pharm Biotechnol , vol.9 , pp. 368-374
    • Matsumura, H.1    Krueger, D.H.2    Kahl, G.3    Terauchi, R.4
  • 80
    • 84908143557 scopus 로고    scopus 로고
    • LGE Genômica e Expressão. []., http://www.lge.ibi.unicamp.br/soja/
  • 83
    • 33750558523 scopus 로고    scopus 로고
    • Laser capture microdissection of plant cells from tape-transferred paraffin sections promotes recovery of structurally intact RNA for global gene profiling
    • 17026538
    • Cai S, Lashbrook CC. Laser capture microdissection of plant cells from tape-transferred paraffin sections promotes recovery of structurally intact RNA for global gene profiling. Plant J 2006, 48:628-637. 10.1111/j.1365-313X.2006.02886.x, 17026538.
    • (2006) Plant J , vol.48 , pp. 628-637
    • Cai, S.1    Lashbrook, C.C.2
  • 84
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: discovering splice junctions with RNA-Seq
    • Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice junctions with RNA-Seq. Bioinforma 2009, 25:1105-1111. 10.1093/bioinformatics/btp120.
    • (2009) Bioinforma , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 85
    • 67650711615 scopus 로고    scopus 로고
    • SOAP2: an improved ultrafast tool for short read alignment
    • Li R, Yu C, Li Y, Lam TW, Yiu SM, Kristiansen K, Wang J. SOAP2: an improved ultrafast tool for short read alignment. Bioinforma 2009, 25:1966-1967. 10.1093/bioinformatics/btp336.
    • (2009) Bioinforma , vol.25 , pp. 1966-1967
    • Li, R.1    Yu, C.2    Li, Y.3    Lam, T.W.4    Yiu, S.M.5    Kristiansen, K.6    Wang, J.7
  • 86
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • 18516045
    • Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 2008, 5:621-628. 10.1038/nmeth.1226, 18516045.
    • (2008) Nat Methods , vol.5 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 87
    • 84908127553 scopus 로고    scopus 로고
    • Biotecsur. []., http://bioinfo.cnpso.embrapa.br/biotecsoja/sistema_autenticacao/login.php
  • 88
    • 84870251823 scopus 로고    scopus 로고
    • Molecular mapping of soybean rust resistance in soybean accession PI 561356 and SNP haplotype analysis of the Rpp1 region in diverse germplasm
    • 22837016
    • Kim KS, Unfried JR, Hyten DL, Frederick RD, Hartman GL, Nelson RL, Song Q, Diers BW. Molecular mapping of soybean rust resistance in soybean accession PI 561356 and SNP haplotype analysis of the Rpp1 region in diverse germplasm. Theor Appl Genet 2012, 125:1339-1352. 10.1007/s00122-012-1932-5, 22837016.
    • (2012) Theor Appl Genet , vol.125 , pp. 1339-1352
    • Kim, K.S.1    Unfried, J.R.2    Hyten, D.L.3    Frederick, R.D.4    Hartman, G.L.5    Nelson, R.L.6    Song, Q.7    Diers, B.W.8
  • 90
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T))
    • 11846609
    • Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)). Methods 2001, 25:402-408. 10.1006/meth.2001.1262, 11846609.
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 91
    • 0036581417 scopus 로고    scopus 로고
    • GATEWAY vectors for Agrobacterium-mediated plant transformation
    • 11992820
    • Karimi M, Inze D, Depicker A. GATEWAY vectors for Agrobacterium-mediated plant transformation. Trends Plant Sci 2002, 7:193-195. 10.1016/S1360-1385(02)02251-3, 11992820.
    • (2002) Trends Plant Sci , vol.7 , pp. 193-195
    • Karimi, M.1    Inze, D.2    Depicker, A.3
  • 92
    • 0036033420 scopus 로고    scopus 로고
    • Transgenic fertile plants of soybean (Glycine max (L.) Merrill) obtained from bombarded embryogenic tissue
    • Droste A, Pasquali G, Bodanese-Zanettini MH. Transgenic fertile plants of soybean (Glycine max (L.) Merrill) obtained from bombarded embryogenic tissue. Euphytica 2002, 127:367-376. 10.1023/A:1020370913140.
    • (2002) Euphytica , vol.127 , pp. 367-376
    • Droste, A.1    Pasquali, G.2    Bodanese-Zanettini, M.H.3
  • 93
    • 33749074077 scopus 로고
    • Development of the particle inflow gun for DNA delivery to plant cells
    • 24201431
    • Finer JJ, Vain P, Jones MW, McMullen MD. Development of the particle inflow gun for DNA delivery to plant cells. Plant Cell Rep 1992, 11:323-328. 10.1007/BF00233358, 24201431.
    • (1992) Plant Cell Rep , vol.11 , pp. 323-328
    • Finer, J.J.1    Vain, P.2    Jones, M.W.3    McMullen, M.D.4
  • 95
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure for small quantities of fresh leaf tissue
    • Doyle JJ, Doyle JL. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 1987, 19:11-15.
    • (1987) Phytochem Bull , vol.19 , pp. 11-15
    • Doyle, J.J.1    Doyle, J.L.2


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