-
1
-
-
0036935844
-
Notch signaling is involved in neurogenesis in the ascidian embryos
-
Akanuma, T., Hori, S., Darras, S. & Nishida, H. 2002. Notch signaling is involved in neurogenesis in the ascidian embryos. Dev. Genes. Evol. 212, 459-472.
-
(2002)
Dev. Genes. Evol.
, vol.212
, pp. 459-472
-
-
Akanuma, T.1
Hori, S.2
Darras, S.3
Nishida, H.4
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. 1990. Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
84876447739
-
Efficient targeted mutagenesis in medaka using custom-designed transcription activator-like effector nucleases
-
Ansai, S., Sakuma, T., Yamamoto, T., Ariga, H., Uemura, N., Takahashi, R. & Kinoshita, M. 2013. Efficient targeted mutagenesis in medaka using custom-designed transcription activator-like effector nucleases. Genetics 193, 739-749.
-
(2013)
Genetics
, vol.193
, pp. 739-749
-
-
Ansai, S.1
Sakuma, T.2
Yamamoto, T.3
Ariga, H.4
Uemura, N.5
Takahashi, R.6
Kinoshita, M.7
-
4
-
-
84892670385
-
Design, evaluation, and screening methods for efficient targeted mutagenesis with transcription activator-like effector nucleases in medaka
-
Ansai, S., Inohaya, K., Yoshiura, Y., Schartl, M., Uemura, N., Takahashi, R. & Kinoshita, M. 2014. Design, evaluation, and screening methods for efficient targeted mutagenesis with transcription activator-like effector nucleases in medaka. Dev. Growth Differ. 56, 98-107.
-
(2014)
Dev. Growth Differ.
, vol.56
, pp. 98-107
-
-
Ansai, S.1
Inohaya, K.2
Yoshiura, Y.3
Schartl, M.4
Uemura, N.5
Takahashi, R.6
Kinoshita, M.7
-
5
-
-
79960064013
-
Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting
-
Cermak, T., Doyle, E. L., Christian, M., Wang, L., Zhang, Y., Schmidt, C., Baller, J. A., Somia, N. V., Bogdanove, A. J. & Voytas, D. F. 2011. Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting. Nucleic Acids Res. 39, e82.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. e82
-
-
Cermak, T.1
Doyle, E.L.2
Christian, M.3
Wang, L.4
Zhang, Y.5
Schmidt, C.6
Baller, J.A.7
Somia, N.V.8
Bogdanove, A.J.9
Voytas, D.F.10
-
6
-
-
78951479577
-
Targeting DNA double-strand breaks with TAL effector nucleases
-
Christian, M., Cermak, T., Doyle, E. L., Schmidt, C., Zhang, F., Hummel, A., Bogdanove, A. J. & Voytas, D. F. 2010. Targeting DNA double-strand breaks with TAL effector nucleases. Genetics 186, 757-761.
-
(2010)
Genetics
, vol.186
, pp. 757-761
-
-
Christian, M.1
Cermak, T.2
Doyle, E.L.3
Schmidt, C.4
Zhang, F.5
Hummel, A.6
Bogdanove, A.J.7
Voytas, D.F.8
-
7
-
-
0031055201
-
Characterization of a notochord-specific enhancer from the Brachyury promoter region of the ascidian, Ciona intestinalis
-
Corbo, J. C., Levine, M. & Zeller, R. W. 1997. Characterization of a notochord-specific enhancer from the Brachyury promoter region of the ascidian, Ciona intestinalis. Development 124, 589-602.
-
(1997)
Development
, vol.124
, pp. 589-602
-
-
Corbo, J.C.1
Levine, M.2
Zeller, R.W.3
-
8
-
-
84892670583
-
Recent progress in genome engineering techniques in the silkworm, Bombyx mori
-
Daimon, T., Kiuchi, T. & Takasu, Y. 2014. Recent progress in genome engineering techniques in the silkworm, Bombyx mori. Dev. Growth Differ. 56, 14-25.
-
(2014)
Dev. Growth Differ.
, vol.56
, pp. 14-25
-
-
Daimon, T.1
Kiuchi, T.2
Takasu, Y.3
-
9
-
-
2242464840
-
The draft genome of Ciona intestinalis: insight into chordate and vertebrate origins
-
Dehal, P., Satou, Y., Campbell, R. K., Chapman, J., Degnan, B., De Tomaso, A., Davidson, B., Di Gregorio, A., Gelpke, M., Goodstein, D. M., Harafuji, N., Hastings, K. E., Ho, I., Hotta, K., Huang, W., Kawashima, T., Lemaire, P., Martinez, D., Meinertzhagen, I. A., Necula, S., Nonaka, M., Putnam, N., Rash, S., Saiga, H., Satake, M., Terry, A., Yamada, L., Wang, H. G., Awazu, S., Azumi, K., Boore, J., Branno, M., Chin-Bow, S., DeSantis, R., Doyle, S., Francino, P., Keys, D. N., Haga, S., Hayashi, H., Hino, K., Imai, K. S., Inaba, K., Kano, S., Kobayashi, K., Kobayashi, M., Lee, B. I., Makabe, K. W., Manohar, C., Matassi, G., Medina, M., Mochizuki, Y., Mount, S., Morishita, T., Miura, S., Nakayama, A., Nishizaka, S., Nomoto, H., Ohta, F., Oishi, K., Rigoutsos, I., Sano, M., Sasaki, A., Sasakura, Y., Shoguchi, E., Shin-I, T., Spagnuolo, A., Stainier, D., Suzuki, M. M., Tassy, O., Takatori, N., Tokuoka, M., Yagi, K., Yoshizaki, F., Wada, S., Zhang, C., Hyatt, P. D., Larimer, F., Detter, C., Doggett, N., Glavina, T., Hawkins, T., Richardson, P., Lucas, S., Kohara, Y., Levine, M., Satoh, N. & Rokhsar, D. S. 2002. The draft genome of Ciona intestinalis: insight into chordate and vertebrate origins. Science 298, 2157-2167.
-
(2002)
Science
, vol.298
, pp. 2157-2167
-
-
Dehal, P.1
Satou, Y.2
Campbell, R.K.3
Chapman, J.4
Degnan, B.5
De Tomaso, A.6
Davidson, B.7
Di Gregorio, A.8
Gelpke, M.9
Goodstein, D.M.10
Harafuji, N.11
Hastings, K.E.12
Ho, I.13
Hotta, K.14
Huang, W.15
Kawashima, T.16
Lemaire, P.17
Martinez, D.18
Meinertzhagen, I.A.19
Necula, S.20
Nonaka, M.21
Putnam, N.22
Rash, S.23
Saiga, H.24
Satake, M.25
Terry, A.26
Yamada, L.27
Wang, H.G.28
Awazu, S.29
Azumi, K.30
Boore, J.31
Branno, M.32
Chin-Bow, S.33
DeSantis, R.34
Doyle, S.35
Francino, P.36
Keys, D.N.37
Haga, S.38
Hayashi, H.39
Hino, K.40
Imai, K.S.41
Inaba, K.42
Kano, S.43
Kobayashi, K.44
Kobayashi, M.45
Lee, B.I.46
Makabe, K.W.47
Manohar, C.48
Matassi, G.49
Medina, M.50
Mochizuki, Y.51
Mount, S.52
Morishita, T.53
Miura, S.54
Nakayama, A.55
Nishizaka, S.56
Nomoto, H.57
Ohta, F.58
Oishi, K.59
Rigoutsos, I.60
Sano, M.61
Sasaki, A.62
Sasakura, Y.63
Shoguchi, E.64
Shin-I, T.65
Spagnuolo, A.66
Stainier, D.67
Suzuki, M.M.68
Tassy, O.69
Takatori, N.70
Tokuoka, M.71
Yagi, K.72
Yoshizaki, F.73
Wada, S.74
Zhang, C.75
Hyatt, P.D.76
Larimer, F.77
Detter, C.78
Doggett, N.79
Glavina, T.80
Hawkins, T.81
Richardson, P.82
Lucas, S.83
Kohara, Y.84
Levine, M.85
Satoh, N.86
Rokhsar, D.S.87
more..
-
10
-
-
84885181396
-
Efficient genome editing in plants using a CRISPR/Cas system
-
Feng, Z., Zhang, B., Ding, W., Liu, X., Yang, D. L., Wei, P., Cao, F., Zhu, S., Zhang, F., Mao, Y. & Zhu, J. K. 2013. Efficient genome editing in plants using a CRISPR/Cas system. Cell Res. 23, 1229-1232.
-
(2013)
Cell Res.
, vol.23
, pp. 1229-1232
-
-
Feng, Z.1
Zhang, B.2
Ding, W.3
Liu, X.4
Yang, D.L.5
Wei, P.6
Cao, F.7
Zhu, S.8
Zhang, F.9
Mao, Y.10
Zhu, J.K.11
-
11
-
-
84881475586
-
Heritable genome editing in C. elegans via a CRISPR-Cas9 system
-
Friedland, A. E., Tzur, Y. B., Esvelt, K. M., Colaiácovo, M. P., Church, G. M. & Calarco, J. A. 2013. Heritable genome editing in C. elegans via a CRISPR-Cas9 system. Nat. Methods 10, 741-743.
-
(2013)
Nat. Methods
, vol.10
, pp. 741-743
-
-
Friedland, A.E.1
Tzur, Y.B.2
Esvelt, K.M.3
Colaiácovo, M.P.4
Church, G.M.5
Calarco, J.A.6
-
12
-
-
84880570576
-
High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells
-
Fu, Y., Foden, J. A., Khayter, C., Maeder, M. L., Reyon, D., Joung, J. K. & Sander, J. D. 2013. High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells. Nat. Biotechnol. 31, 822-826.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 822-826
-
-
Fu, Y.1
Foden, J.A.2
Khayter, C.3
Maeder, M.L.4
Reyon, D.5
Joung, J.K.6
Sander, J.D.7
-
13
-
-
0031893099
-
Cihox5, a new Ciona intestinalis Hox-related gene, is involved in regionalization of the spinal cord
-
Gionti, M., Ristoratore, F., Di Gregorio, A., Aniello, F., Branno, M. & Di Lauro, R. 1998. Cihox5, a new Ciona intestinalis Hox-related gene, is involved in regionalization of the spinal cord. Dev. Genes. Evol. 207, 515-523.
-
(1998)
Dev. Genes. Evol.
, vol.207
, pp. 515-523
-
-
Gionti, M.1
Ristoratore, F.2
Di Gregorio, A.3
Aniello, F.4
Branno, M.5
Di Lauro, R.6
-
14
-
-
84880088705
-
Genome engineering of Drosophila with the CRISPR RNA-guided Cas9 nuclease
-
Gratz, S. J., Cummings, A. M., Nguyen, J. N., Hamm, D. C., Donohue, L. K., Harrison, M. M., Wildonger, J. & O'Connor-Giles, K. M. 2013. Genome engineering of Drosophila with the CRISPR RNA-guided Cas9 nuclease. Genetics 194, 1029-1035.
-
(2013)
Genetics
, vol.194
, pp. 1029-1035
-
-
Gratz, S.J.1
Cummings, A.M.2
Nguyen, J.N.3
Hamm, D.C.4
Donohue, L.K.5
Harrison, M.M.6
Wildonger, J.7
O'Connor-Giles, K.M.8
-
15
-
-
84892771868
-
Efficient RNA/Cas9-mediated genome editing in Xenopus tropicalis
-
Guo, X., Zhang, T., Hu, Z., Zhang, Y., Shi, Z., Wang, Q., Cui, Y., Wang, F., Zhao, H. & Chen, Y. 2014. Efficient RNA/Cas9-mediated genome editing in Xenopus tropicalis. Development 141, 707-714.
-
(2014)
Development
, vol.141
, pp. 707-714
-
-
Guo, X.1
Zhang, T.2
Hu, Z.3
Zhang, Y.4
Shi, Z.5
Wang, Q.6
Cui, Y.7
Wang, F.8
Zhao, H.9
Chen, Y.10
-
16
-
-
84892668405
-
Transcription activator-like effector nucleases efficiently disrupt the target gene in Iberian ribbed newts (Pleurodeles waltl), an experimental model animal for regeneration
-
Hayashi, T., Sakamoto, K., Sakuma, T., Yokotani, N., Inoue, T., Kawaguchi, E., Agata, K., Yamamoto, T. & Takeuchi, T. 2014. Transcription activator-like effector nucleases efficiently disrupt the target gene in Iberian ribbed newts (Pleurodeles waltl), an experimental model animal for regeneration. Dev. Growth Differ. 56, 115-121.
-
(2014)
Dev. Growth Differ.
, vol.56
, pp. 115-121
-
-
Hayashi, T.1
Sakamoto, K.2
Sakuma, T.3
Yokotani, N.4
Inoue, T.5
Kawaguchi, E.6
Agata, K.7
Yamamoto, T.8
Takeuchi, T.9
-
17
-
-
0027103061
-
Introduction and expression of recombinant genes in ascidian embryos
-
Hikosaka, A., Kusakabe, T., Satoh, N. & Makabe, K. W. 1992. Introduction and expression of recombinant genes in ascidian embryos. Dev. Growth Differ. 34, 627-634.
-
(1992)
Dev. Growth Differ
, vol.34
, pp. 627-634
-
-
Hikosaka, A.1
Kusakabe, T.2
Satoh, N.3
Makabe, K.W.4
-
18
-
-
84892670711
-
Genome editing using artificial site-specific nucleases in zebrafish
-
Hisano, Y., Ota, S. & Kawahara, A. 2014. Genome editing using artificial site-specific nucleases in zebrafish. Dev. Growth Differ. 56, 26-33.
-
(2014)
Dev. Growth Differ.
, vol.56
, pp. 26-33
-
-
Hisano, Y.1
Ota, S.2
Kawahara, A.3
-
19
-
-
84892676861
-
Targeted mutagenesis in sea urchin embryos using TALENs
-
Hosoi, S., Sakuma, T., Sakamoto, N. & Yamamoto, T. 2014. Targeted mutagenesis in sea urchin embryos using TALENs. Dev. Growth Differ. 56, 92-97.
-
(2014)
Dev. Growth Differ.
, vol.56
, pp. 92-97
-
-
Hosoi, S.1
Sakuma, T.2
Sakamoto, N.3
Yamamoto, T.4
-
20
-
-
84888866065
-
Efficient CRISPR/Cas9 genome editing with low off-target effects in zebrafish
-
Hruscha, A., Krawitz, P., Rechenberg, A., Heinrich, V., Hecht, J., Haass, C. & Schmid, B. 2013. Efficient CRISPR/Cas9 genome editing with low off-target effects in zebrafish. Development 140, 4982-4987.
-
(2013)
Development
, vol.140
, pp. 4982-4987
-
-
Hruscha, A.1
Krawitz, P.2
Rechenberg, A.3
Heinrich, V.4
Hecht, J.5
Haass, C.6
Schmid, B.7
-
21
-
-
84874617789
-
Efficient genome editing in zebrafish using a CRISPR-Cas system
-
Hwang, W. Y., Fu, Y., Reyon, D., Maeder, M. L., Tsai, S. Q., Sander, J. D., Peterson, R. T., Yeh, J. R. & Joung, J. K. 2013. Efficient genome editing in zebrafish using a CRISPR-Cas system. Nat. Biotechnol. 31, 227-229.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 227-229
-
-
Hwang, W.Y.1
Fu, Y.2
Reyon, D.3
Maeder, M.L.4
Tsai, S.Q.5
Sander, J.D.6
Peterson, R.T.7
Yeh, J.R.8
Joung, J.K.9
-
22
-
-
77951231100
-
Limited functions of Hox genes in the larval development of the ascidian
-
Ikuta, T., Satoh, N. & Saiga, H. 2010. Limited functions of Hox genes in the larval development of the ascidian Ciona intestinalis. Development 137, 1505-1513.
-
(2010)
Ciona intestinalis. Development
, vol.137
, pp. 1505-1513
-
-
Ikuta, T.1
Satoh, N.2
Saiga, H.3
-
23
-
-
6344248544
-
Ciona intestinalis Hox gene cluster: Its dispersed structure and residual colinear expression in development
-
Ikuta, T., Yoshida, N., Satoh, N. & Saiga, H. 2004. Ciona intestinalis Hox gene cluster: Its dispersed structure and residual colinear expression in development. Proc. Natl. Acad. Sci. USA 101, 15118-15123.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 15118-15123
-
-
Ikuta, T.1
Yoshida, N.2
Satoh, N.3
Saiga, H.4
-
24
-
-
0033853018
-
β-catenin mediates the specification of endoderm cells in ascidian embryos
-
Imai, K., Takada, N., Satoh, N. & Satou, Y. 2000. β-catenin mediates the specification of endoderm cells in ascidian embryos. Development 127, 3009-3020.
-
(2000)
Development
, vol.127
, pp. 3009-3020
-
-
Imai, K.1
Takada, N.2
Satoh, N.3
Satou, Y.4
-
25
-
-
84862694393
-
Efficient targeted mutagenesis of the chordate Ciona intestinalis genome with zinc-finger nucleases
-
Kawai, N., Ochiai, H., Sakuma, T., Yamada, L., Sawada, H., Yamamoto, T. & Sasakura, Y. 2012. Efficient targeted mutagenesis of the chordate Ciona intestinalis genome with zinc-finger nucleases. Dev. Growth Differ. 54, 535-545.
-
(2012)
Dev. Growth Differ.
, vol.54
, pp. 535-545
-
-
Kawai, N.1
Ochiai, H.2
Sakuma, T.3
Yamada, L.4
Sawada, H.5
Yamamoto, T.6
Sasakura, Y.7
-
26
-
-
84884925278
-
Highly improved gene targeting by germline-specific Cas9 expression in Drosophila
-
Kondo, S. & Ueda, R. 2013. Highly improved gene targeting by germline-specific Cas9 expression in Drosophila. Genetics 195, 715-721.
-
(2013)
Genetics
, vol.195
, pp. 715-721
-
-
Kondo, S.1
Ueda, R.2
-
27
-
-
84892675689
-
TALEN-induced gene knock out in Drosophila
-
Kondo, T., Sakuma, T., Wada, H., Akimoto-Kato, A., Yamamoto, T. & Hayashi, S. 2014. TALEN-induced gene knock out in Drosophila. Dev. Growth Differ. 56, 86-91.
-
(2014)
Dev. Growth Differ.
, vol.56
, pp. 86-91
-
-
Kondo, T.1
Sakuma, T.2
Wada, H.3
Akimoto-Kato, A.4
Yamamoto, T.5
Hayashi, S.6
-
28
-
-
0032727636
-
Patterning the ascidian nervous system: structure, expression and transgenic analysis of the CiHox3 gene
-
Locascio, A., Aniello, F., Amoroso, A., Manzanares, M., Krumlauf, R. & Branno, M. 1999. Patterning the ascidian nervous system: structure, expression and transgenic analysis of the CiHox3 gene. Development 126, 4737-4738.
-
(1999)
Development
, vol.126
, pp. 4737-4738
-
-
Locascio, A.1
Aniello, F.2
Amoroso, A.3
Manzanares, M.4
Krumlauf, R.5
Branno, M.6
-
29
-
-
84884856342
-
Cas9 as a versatile tool for engineering biology
-
Mali, P., Esvelt, K. M. & Church, G. M. 2013. Cas9 as a versatile tool for engineering biology. Nat. Methods 10, 957-963.
-
(2013)
Nat. Methods
, vol.10
, pp. 957-963
-
-
Mali, P.1
Esvelt, K.M.2
Church, G.M.3
-
30
-
-
84892659943
-
Feasibility for a large scale mouse mutagenesis by injecting CRISPR/Cas plasmid into zygotes
-
Mashiko, D., Young, S. A., Muto, M., Kato, H., Nozawa, K., Ogawa, M., Noda, T., Kim, Y. J., Satouh, Y., Fujihara, Y. & Ikawa, M. 2014. Feasibility for a large scale mouse mutagenesis by injecting CRISPR/Cas plasmid into zygotes. Dev. Growth Differ. 56, 122-129.
-
(2014)
Dev. Growth Differ.
, vol.56
, pp. 122-129
-
-
Mashiko, D.1
Young, S.A.2
Muto, M.3
Kato, H.4
Nozawa, K.5
Ogawa, M.6
Noda, T.7
Kim, Y.J.8
Satouh, Y.9
Fujihara, Y.10
Ikawa, M.11
-
31
-
-
84892678484
-
Gene targeting technologies in rats: zinc finger nucleases, transcription activator-like effector nucleases, and clustered regularly interspaced short palindromic repeats
-
Mashimo, T. 2014. Gene targeting technologies in rats: zinc finger nucleases, transcription activator-like effector nucleases, and clustered regularly interspaced short palindromic repeats. Dev. Growth Differ. 56, 46-52.
-
(2014)
Dev. Growth Differ.
, vol.56
, pp. 46-52
-
-
Mashimo, T.1
-
32
-
-
79551685675
-
A TALE nuclease architecture for efficient genome editing
-
Miller, J. C., Tan, S., Qiao, G., Barlow, K. A., Wang, J., Xia, D. F., Meng, X., Paschon, D. E., Leung, E., Hinkley, S. J., Dulay, G. P., Hua, K. L., Ankoudinova, I., Cost, G. J., Urnov, F. D., Zhang, H. S., Holmes, M. C., Zhang, L., Gregory, P. D. & Rebar, E. J. 2011. A TALE nuclease architecture for efficient genome editing. Nat. Biotechnol. 29, 143-148.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 143-148
-
-
Miller, J.C.1
Tan, S.2
Qiao, G.3
Barlow, K.A.4
Wang, J.5
Xia, D.F.6
Meng, X.7
Paschon, D.E.8
Leung, E.9
Hinkley, S.J.10
Dulay, G.P.11
Hua, K.L.12
Ankoudinova, I.13
Cost, G.J.14
Urnov, F.D.15
Zhang, H.S.16
Holmes, M.C.17
Zhang, L.18
Gregory, P.D.19
Rebar, E.J.20
more..
-
33
-
-
84890787845
-
Simple and efficient CRISPR/Cas9-mediated targeted mutagenesis in Xenopus tropicalis
-
Nakayama, T., Fish, M. B., Fisher, M., Oomen-Hajagos, J., Thomsen, G. H. & Grainger, R. M. 2013. Simple and efficient CRISPR/Cas9-mediated targeted mutagenesis in Xenopus tropicalis. Genesis 51, 835-843.
-
(2013)
Genesis
, vol.51
, pp. 835-843
-
-
Nakayama, T.1
Fish, M.B.2
Fisher, M.3
Oomen-Hajagos, J.4
Thomsen, G.H.5
Grainger, R.M.6
-
34
-
-
50049125151
-
RNA interference by expressing short hairpin RNA in the Ciona intestinalis embryo
-
Nishiyama, A. & Fujiwara, S. 2008. RNA interference by expressing short hairpin RNA in the Ciona intestinalis embryo. Dev. Growth Differ. 50, 521-529.
-
(2008)
Dev. Growth Differ.
, vol.50
, pp. 521-529
-
-
Nishiyama, A.1
Fujiwara, S.2
-
35
-
-
77954738991
-
Targeted mutagenesis in the sea urchin embryo using zinc-finger nucleases
-
Ochiai, H., Fujita, K., Suzuki, K., Nishikawa, M., Shibata, T., Sakamoto, N. & Yamamoto, T. 2010. Targeted mutagenesis in the sea urchin embryo using zinc-finger nucleases. Genes Cells 15, 875-885.
-
(2010)
Genes Cells
, vol.15
, pp. 875-885
-
-
Ochiai, H.1
Fujita, K.2
Suzuki, K.3
Nishikawa, M.4
Shibata, T.5
Sakamoto, N.6
Yamamoto, T.7
-
36
-
-
84863565875
-
Zinc-finger nuclease-mediated targeted insertion of reporter genes for quantitative imaging of gene expression in sea urchin embryos
-
Ochiai, H., Sakamoto, N., Fujita, K., Nishikawa, M., Suzuki, K., Matsuura, S., Miyamoto, T., Sakuma, T., Shibata, T. & Yamamoto, T. 2012. Zinc-finger nuclease-mediated targeted insertion of reporter genes for quantitative imaging of gene expression in sea urchin embryos. Proc. Natl. Acad. Sci. USA 109, 10915-10920.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 10915-10920
-
-
Ochiai, H.1
Sakamoto, N.2
Fujita, K.3
Nishikawa, M.4
Suzuki, K.5
Matsuura, S.6
Miyamoto, T.7
Sakuma, T.8
Shibata, T.9
Yamamoto, T.10
-
37
-
-
84892677890
-
Targeted mutagenesis of multiple and paralogous genes in Xenopus laevis using two pairs of transcription activator-like effector nucleases
-
Sakane, Y., Sakuma, T., Kashiwagi, K., Kashiwagi, A., Yamamoto, T. & Suzuki, K. T. 2014. Targeted mutagenesis of multiple and paralogous genes in Xenopus laevis using two pairs of transcription activator-like effector nucleases. Dev. Growth Differ. 56, 108-114.
-
(2014)
Dev. Growth Differ.
, vol.56
, pp. 108-114
-
-
Sakane, Y.1
Sakuma, T.2
Kashiwagi, K.3
Kashiwagi, A.4
Yamamoto, T.5
Suzuki, K.T.6
-
38
-
-
84875618956
-
Efficient TALEN construction and evaluation methods for human cell and animal applications
-
Sakuma, T., Hosoi, S., Woltjen, K., Suzuki, K., Kashiwagi, K., Wada, H., Ochiai, H., Miyamoto, T., Kawai, N., Sasakura, Y., Matsuura, S., Okada, Y., Kawahara, A., Hayashi, S. & Yamamoto, T. 2013a. Efficient TALEN construction and evaluation methods for human cell and animal applications. Genes Cells 18, 315-326.
-
(2013)
Genes Cells
, vol.18
, pp. 315-326
-
-
Sakuma, T.1
Hosoi, S.2
Woltjen, K.3
Suzuki, K.4
Kashiwagi, K.5
Wada, H.6
Ochiai, H.7
Miyamoto, T.8
Kawai, N.9
Sasakura, Y.10
Matsuura, S.11
Okada, Y.12
Kawahara, A.13
Hayashi, S.14
Yamamoto, T.15
-
39
-
-
84889597147
-
Repeating pattern of non-RVD variations in DNA-binding modules enhances TALEN activity
-
Sakuma, T., Ochiai, H., Kaneko, T., Mashimo, T., Tokumasu, D., Sakane, Y., Suzuki, K., Miyamoto, T., Sakamoto, N., Matsuura, S. & Yamamoto, T. 2013b. Repeating pattern of non-RVD variations in DNA-binding modules enhances TALEN activity. Sci. Rep. 3, 3379.
-
(2013)
Sci. Rep.
, vol.3
, pp. 3379
-
-
Sakuma, T.1
Ochiai, H.2
Kaneko, T.3
Mashimo, T.4
Tokumasu, D.5
Sakane, Y.6
Suzuki, K.7
Miyamoto, T.8
Sakamoto, N.9
Matsuura, S.10
Yamamoto, T.11
-
40
-
-
84892680771
-
Nuclease-mediated genome editing: at the front-line of functional genomics technology
-
Sakuma, T. & Woltjen, K. 2014. Nuclease-mediated genome editing: at the front-line of functional genomics technology. Dev. Growth Differ. 56, 2-13.
-
(2014)
Dev. Growth Differ.
, vol.56
, pp. 2-13
-
-
Sakuma, T.1
Woltjen, K.2
-
41
-
-
34547605763
-
Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool
-
Sander, J. D., Zaback, P. Z., Joung, J. K., Voytas, D. F. & Dobbs, D. 2007. Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool. Nucleic Acids Res. 35, W599-W605.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. W599-W605
-
-
Sander, J.D.1
Zaback, P.Z.2
Joung, J.K.3
Voytas, D.F.4
Dobbs, D.5
-
42
-
-
77954295352
-
ZiFiT (Zinc Finger Targeter): an updated zinc finger engineering tool
-
Sander, J. D., Maeder, M. L., Reyon, D., Voytas, D. F., Joung, J. K. & Dobbs, D. 2010. ZiFiT (Zinc Finger Targeter): an updated zinc finger engineering tool. Nucleic Acids Res. 38, W462-W468.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. W462-W468
-
-
Sander, J.D.1
Maeder, M.L.2
Reyon, D.3
Voytas, D.F.4
Joung, J.K.5
Dobbs, D.6
-
43
-
-
44449120801
-
Targeted gene knockout in mammalian cells by using engineered zinc-finger nucleases
-
Santiago, Y., Chan, E., Liu, P. Q., Orlando, S., Zhang, L., Urnov, F. D., Holmes, M. C., Guschin, D., Waite, A., Miller, J. C., Rebar, E. J., Gregory, P. D., Klug, A. & Collingwood, T. 2008. Targeted gene knockout in mammalian cells by using engineered zinc-finger nucleases. Proc. Natl. Acad. Sci. USA 105, 5809-5814.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 5809-5814
-
-
Santiago, Y.1
Chan, E.2
Liu, P.Q.3
Orlando, S.4
Zhang, L.5
Urnov, F.D.6
Holmes, M.C.7
Guschin, D.8
Waite, A.9
Miller, J.C.10
Rebar, E.J.11
Gregory, P.D.12
Klug, A.13
Collingwood, T.14
-
44
-
-
0038610809
-
Germ-line transgenesis of the Tc1/mariner superfamily transposon Minos in Ciona intestinalis
-
Sasakura, Y., Awazu, S., Chiba, S. & Satoh, N. 2003. Germ-line transgenesis of the Tc1/mariner superfamily transposon Minos in Ciona intestinalis. Proc. Natl. Acad. Sci. USA 100, 7726-7730.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 7726-7730
-
-
Sasakura, Y.1
Awazu, S.2
Chiba, S.3
Satoh, N.4
-
45
-
-
26944480299
-
Transposon-mediated insertional mutagenesis revealed the functions of animal cellulose synthase in the ascidian Ciona intestinalis
-
Sasakura, Y., Nakashima, K., Awazu, S., Matsuoka, T., Nakayama, A., Azuma, J. & Satoh, N. 2005. Transposon-mediated insertional mutagenesis revealed the functions of animal cellulose synthase in the ascidian Ciona intestinalis. Proc. Natl. Acad. Sci. USA 102, 15134-15139.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 15134-15139
-
-
Sasakura, Y.1
Nakashima, K.2
Awazu, S.3
Matsuoka, T.4
Nakayama, A.5
Azuma, J.6
Satoh, N.7
-
46
-
-
75649117804
-
Maternal factor-mediated epigenetic gene silencing in the ascidian Ciona intestinalis
-
Sasakura, Y., Suzuki, M. M., Hozumi, A., Inaba, K. & Satoh, N. 2010. Maternal factor-mediated epigenetic gene silencing in the ascidian Ciona intestinalis. Mol. Genet. Genomics 283, 99-110.
-
(2010)
Mol. Genet. Genomics
, vol.283
, pp. 99-110
-
-
Sasakura, Y.1
Suzuki, M.M.2
Hozumi, A.3
Inaba, K.4
Satoh, N.5
-
47
-
-
84861414383
-
Retinoic acid-driven Hox1 is required in the epidermis for forming the otic/atrial placodes during ascidian metamorphosis
-
Sasakura, Y., Kanda, M., Ikeda, T., Horie, T., Kawai, N., Ogura, Y., Yoshida, R., Hozumi, A., Satoh, N. & Fujiwara, S. 2012. Retinoic acid-driven Hox1 is required in the epidermis for forming the otic/atrial placodes during ascidian metamorphosis. Development 139, 2156-2160.
-
(2012)
Development
, vol.139
, pp. 2156-2160
-
-
Sasakura, Y.1
Kanda, M.2
Ikeda, T.3
Horie, T.4
Kawai, N.5
Ogura, Y.6
Yoshida, R.7
Hozumi, A.8
Satoh, N.9
Fujiwara, S.10
-
48
-
-
0037379619
-
The ascidian tadpole larva: comparative molecular development and genomics
-
Satoh, N. 2003. The ascidian tadpole larva: comparative molecular development and genomics. Nat. Rev. Genet. 4, 285-295.
-
(2003)
Nat. Rev. Genet.
, vol.4
, pp. 285-295
-
-
Satoh, N.1
-
49
-
-
0034898465
-
Action of morpholinos in Ciona embryos
-
Satou, Y., Imai, K. S. & Satoh, N. 2001. Action of morpholinos in Ciona embryos. Genesis 30, 103-106.
-
(2001)
Genesis
, vol.30
, pp. 103-106
-
-
Satou, Y.1
Imai, K.S.2
Satoh, N.3
-
50
-
-
55349149407
-
Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations
-
Satou, Y., Mineta, K., Ogasawara, M., Sasakura, Y., Shoguchi, E., Ueno, K., Yamada, L., Matsumoto, J., Wasserscheid, J., Dewar, K., Wiley, G. B., Macmil, S. L., Roe, B. A., Zeller, R. W., Hastings, K. E., Lemaire, P., Lindquist, E., Endo, T., Hotta, K. & Inaba, K. 2008. Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations. Genome Biol. 9, R152.
-
(2008)
Genome Biol.
, vol.9
, pp. R152
-
-
Satou, Y.1
Mineta, K.2
Ogasawara, M.3
Sasakura, Y.4
Shoguchi, E.5
Ueno, K.6
Yamada, L.7
Matsumoto, J.8
Wasserscheid, J.9
Dewar, K.10
Wiley, G.B.11
Macmil, S.L.12
Roe, B.A.13
Zeller, R.W.14
Hastings, K.E.15
Lemaire, P.16
Lindquist, E.17
Endo, T.18
Hotta, K.19
Inaba, K.20
more..
-
51
-
-
84897954175
-
Efficient genome modification by CRISPR-Cas9 nickase with minimal off-target effects
-
Shen, B., Zhang, W., Zhang, J., Zhou, J., Wang, J., Chen, L., Wang, L., Hodgkins, A., Iyer, V., Huang, X. & Skarnes, W. C. 2014. Efficient genome modification by CRISPR-Cas9 nickase with minimal off-target effects. Nat. Methods 11, 399-402.
-
(2014)
Nat. Methods
, vol.11
, pp. 399-402
-
-
Shen, B.1
Zhang, W.2
Zhang, J.3
Zhou, J.4
Wang, J.5
Chen, L.6
Wang, L.7
Hodgkins, A.8
Iyer, V.9
Huang, X.10
Skarnes, W.C.11
-
52
-
-
84892680659
-
Versatile strategy for isolating transcription activator-like effector nuclease-mediated knockout mutants in Caenorhabditis elegans
-
Sugi, T., Sakuma, T., Ohtani, Y. & Yamamoto, T. 2014. Versatile strategy for isolating transcription activator-like effector nuclease-mediated knockout mutants in Caenorhabditis elegans. Dev. Growth Differ. 56, 78-85.
-
(2014)
Dev. Growth Differ.
, vol.56
, pp. 78-85
-
-
Sugi, T.1
Sakuma, T.2
Ohtani, Y.3
Yamamoto, T.4
-
53
-
-
84974633017
-
High efficiency TALENs enable F0 functional analysis by targeted gene disruption in Xenopus laevis embryos
-
Suzuki, K. T., Isoyama, Y., Kashiwagi, K., Sakuma, T., Ochiai, H., Sakamoto, N., Furuno, N., Kashiwagi, A. & Yamamoto, T. 2013. High efficiency TALENs enable F0 functional analysis by targeted gene disruption in Xenopus laevis embryos. Biol. Open 2, 448-452.
-
(2013)
Biol. Open
, vol.2
, pp. 448-452
-
-
Suzuki, K.T.1
Isoyama, Y.2
Kashiwagi, K.3
Sakuma, T.4
Ochiai, H.5
Sakamoto, N.6
Furuno, N.7
Kashiwagi, A.8
Yamamoto, T.9
-
54
-
-
84891509001
-
Tissue-specific and ubiquitous gene knockouts by TALEN electroporation provide new approaches to investigating gene function in Ciona
-
Treen, N., Yoshida, K., Sakuma, T., Sasaki, H., Kawai, N., Yamamoto, T. & Sasakura, Y. 2014. Tissue-specific and ubiquitous gene knockouts by TALEN electroporation provide new approaches to investigating gene function in Ciona. Development 141, 481-487.
-
(2014)
Development
, vol.141
, pp. 481-487
-
-
Treen, N.1
Yoshida, K.2
Sakuma, T.3
Sasaki, H.4
Kawai, N.5
Yamamoto, T.6
Sasakura, Y.7
-
55
-
-
84866139334
-
Non-transgenic genome modifications in a hemimetabolous insect using zinc-finger and TAL effector nucleases
-
Watanabe, T., Ochiai, H., Sakuma, T., Horch, H. W., Hamaguchi, N., Nakamura, T., Bando, T., Ohuchi, H., Yamamoto, T., Noji, S. & Mito, T. 2012. Non-transgenic genome modifications in a hemimetabolous insect using zinc-finger and TAL effector nucleases. Nat. Commun. 3, 1017.
-
(2012)
Nat. Commun.
, vol.3
, pp. 1017
-
-
Watanabe, T.1
Ochiai, H.2
Sakuma, T.3
Horch, H.W.4
Hamaguchi, N.5
Nakamura, T.6
Bando, T.7
Ohuchi, H.8
Yamamoto, T.9
Noji, S.10
Mito, T.11
-
56
-
-
84857097177
-
RNA-guided genetic silencing systems in bacteria and archaea
-
Wiedenheft, B., Sternberg, S. H. & Doudna, J. A. 2012. RNA-guided genetic silencing systems in bacteria and archaea. Nature 482, 331-338.
-
(2012)
Nature
, vol.482
, pp. 331-338
-
-
Wiedenheft, B.1
Sternberg, S.H.2
Doudna, J.A.3
-
57
-
-
84884962826
-
RNA-guided genome editing in plants using CRISPR-Cas system
-
Xie, K. & Yang, Y. 2013. RNA-guided genome editing in plants using CRISPR-Cas system. Mol. Plant 6, 1975-1983.
-
(2013)
Mol. Plant
, vol.6
, pp. 1975-1983
-
-
Xie, K.1
Yang, Y.2
-
58
-
-
84900841384
-
Germ cell mutations of the ascidian Ciona intestinalis with TALE nucleases
-
Yoshida, K., Treen, N., Hozumi, A., Sakuma, T., Yamamoto, T. & Sasakura, Y. 2014. Germ cell mutations of the ascidian Ciona intestinalis with TALE nucleases. Genesis 52, 431-439.
-
(2014)
Genesis
, vol.52
, pp. 431-439
-
-
Yoshida, K.1
Treen, N.2
Hozumi, A.3
Sakuma, T.4
Yamamoto, T.5
Sasakura, Y.6
|