메뉴 건너뛰기




Volumn 56, Issue 7, 2014, Pages 499-510

CRISPR/Cas9-mediated gene knockout in the ascidian Ciona intestinalis

Author keywords

Ciona intestinalis; Ascidian; CRISPR Cas9; Knockout; Mutagenesis

Indexed keywords

MESSENGER RNA; RNA; SHORT GUIDE RNA; TRANSCRIPTION ACTIVATOR LIKE EFFECTOR NUCLEASE; UNCLASSIFIED DRUG; PRIMER DNA;

EID: 84908047255     PISSN: 00121592     EISSN: 1440169X     Source Type: Journal    
DOI: 10.1111/dgd.12149     Document Type: Article
Times cited : (69)

References (58)
  • 1
    • 0036935844 scopus 로고    scopus 로고
    • Notch signaling is involved in neurogenesis in the ascidian embryos
    • Akanuma, T., Hori, S., Darras, S. & Nishida, H. 2002. Notch signaling is involved in neurogenesis in the ascidian embryos. Dev. Genes. Evol. 212, 459-472.
    • (2002) Dev. Genes. Evol. , vol.212 , pp. 459-472
    • Akanuma, T.1    Hori, S.2    Darras, S.3    Nishida, H.4
  • 3
    • 84876447739 scopus 로고    scopus 로고
    • Efficient targeted mutagenesis in medaka using custom-designed transcription activator-like effector nucleases
    • Ansai, S., Sakuma, T., Yamamoto, T., Ariga, H., Uemura, N., Takahashi, R. & Kinoshita, M. 2013. Efficient targeted mutagenesis in medaka using custom-designed transcription activator-like effector nucleases. Genetics 193, 739-749.
    • (2013) Genetics , vol.193 , pp. 739-749
    • Ansai, S.1    Sakuma, T.2    Yamamoto, T.3    Ariga, H.4    Uemura, N.5    Takahashi, R.6    Kinoshita, M.7
  • 4
    • 84892670385 scopus 로고    scopus 로고
    • Design, evaluation, and screening methods for efficient targeted mutagenesis with transcription activator-like effector nucleases in medaka
    • Ansai, S., Inohaya, K., Yoshiura, Y., Schartl, M., Uemura, N., Takahashi, R. & Kinoshita, M. 2014. Design, evaluation, and screening methods for efficient targeted mutagenesis with transcription activator-like effector nucleases in medaka. Dev. Growth Differ. 56, 98-107.
    • (2014) Dev. Growth Differ. , vol.56 , pp. 98-107
    • Ansai, S.1    Inohaya, K.2    Yoshiura, Y.3    Schartl, M.4    Uemura, N.5    Takahashi, R.6    Kinoshita, M.7
  • 7
    • 0031055201 scopus 로고    scopus 로고
    • Characterization of a notochord-specific enhancer from the Brachyury promoter region of the ascidian, Ciona intestinalis
    • Corbo, J. C., Levine, M. & Zeller, R. W. 1997. Characterization of a notochord-specific enhancer from the Brachyury promoter region of the ascidian, Ciona intestinalis. Development 124, 589-602.
    • (1997) Development , vol.124 , pp. 589-602
    • Corbo, J.C.1    Levine, M.2    Zeller, R.W.3
  • 8
    • 84892670583 scopus 로고    scopus 로고
    • Recent progress in genome engineering techniques in the silkworm, Bombyx mori
    • Daimon, T., Kiuchi, T. & Takasu, Y. 2014. Recent progress in genome engineering techniques in the silkworm, Bombyx mori. Dev. Growth Differ. 56, 14-25.
    • (2014) Dev. Growth Differ. , vol.56 , pp. 14-25
    • Daimon, T.1    Kiuchi, T.2    Takasu, Y.3
  • 13
    • 0031893099 scopus 로고    scopus 로고
    • Cihox5, a new Ciona intestinalis Hox-related gene, is involved in regionalization of the spinal cord
    • Gionti, M., Ristoratore, F., Di Gregorio, A., Aniello, F., Branno, M. & Di Lauro, R. 1998. Cihox5, a new Ciona intestinalis Hox-related gene, is involved in regionalization of the spinal cord. Dev. Genes. Evol. 207, 515-523.
    • (1998) Dev. Genes. Evol. , vol.207 , pp. 515-523
    • Gionti, M.1    Ristoratore, F.2    Di Gregorio, A.3    Aniello, F.4    Branno, M.5    Di Lauro, R.6
  • 16
    • 84892668405 scopus 로고    scopus 로고
    • Transcription activator-like effector nucleases efficiently disrupt the target gene in Iberian ribbed newts (Pleurodeles waltl), an experimental model animal for regeneration
    • Hayashi, T., Sakamoto, K., Sakuma, T., Yokotani, N., Inoue, T., Kawaguchi, E., Agata, K., Yamamoto, T. & Takeuchi, T. 2014. Transcription activator-like effector nucleases efficiently disrupt the target gene in Iberian ribbed newts (Pleurodeles waltl), an experimental model animal for regeneration. Dev. Growth Differ. 56, 115-121.
    • (2014) Dev. Growth Differ. , vol.56 , pp. 115-121
    • Hayashi, T.1    Sakamoto, K.2    Sakuma, T.3    Yokotani, N.4    Inoue, T.5    Kawaguchi, E.6    Agata, K.7    Yamamoto, T.8    Takeuchi, T.9
  • 17
    • 0027103061 scopus 로고
    • Introduction and expression of recombinant genes in ascidian embryos
    • Hikosaka, A., Kusakabe, T., Satoh, N. & Makabe, K. W. 1992. Introduction and expression of recombinant genes in ascidian embryos. Dev. Growth Differ. 34, 627-634.
    • (1992) Dev. Growth Differ , vol.34 , pp. 627-634
    • Hikosaka, A.1    Kusakabe, T.2    Satoh, N.3    Makabe, K.W.4
  • 18
    • 84892670711 scopus 로고    scopus 로고
    • Genome editing using artificial site-specific nucleases in zebrafish
    • Hisano, Y., Ota, S. & Kawahara, A. 2014. Genome editing using artificial site-specific nucleases in zebrafish. Dev. Growth Differ. 56, 26-33.
    • (2014) Dev. Growth Differ. , vol.56 , pp. 26-33
    • Hisano, Y.1    Ota, S.2    Kawahara, A.3
  • 22
    • 77951231100 scopus 로고    scopus 로고
    • Limited functions of Hox genes in the larval development of the ascidian
    • Ikuta, T., Satoh, N. & Saiga, H. 2010. Limited functions of Hox genes in the larval development of the ascidian Ciona intestinalis. Development 137, 1505-1513.
    • (2010) Ciona intestinalis. Development , vol.137 , pp. 1505-1513
    • Ikuta, T.1    Satoh, N.2    Saiga, H.3
  • 23
    • 6344248544 scopus 로고    scopus 로고
    • Ciona intestinalis Hox gene cluster: Its dispersed structure and residual colinear expression in development
    • Ikuta, T., Yoshida, N., Satoh, N. & Saiga, H. 2004. Ciona intestinalis Hox gene cluster: Its dispersed structure and residual colinear expression in development. Proc. Natl. Acad. Sci. USA 101, 15118-15123.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 15118-15123
    • Ikuta, T.1    Yoshida, N.2    Satoh, N.3    Saiga, H.4
  • 24
    • 0033853018 scopus 로고    scopus 로고
    • β-catenin mediates the specification of endoderm cells in ascidian embryos
    • Imai, K., Takada, N., Satoh, N. & Satou, Y. 2000. β-catenin mediates the specification of endoderm cells in ascidian embryos. Development 127, 3009-3020.
    • (2000) Development , vol.127 , pp. 3009-3020
    • Imai, K.1    Takada, N.2    Satoh, N.3    Satou, Y.4
  • 25
    • 84862694393 scopus 로고    scopus 로고
    • Efficient targeted mutagenesis of the chordate Ciona intestinalis genome with zinc-finger nucleases
    • Kawai, N., Ochiai, H., Sakuma, T., Yamada, L., Sawada, H., Yamamoto, T. & Sasakura, Y. 2012. Efficient targeted mutagenesis of the chordate Ciona intestinalis genome with zinc-finger nucleases. Dev. Growth Differ. 54, 535-545.
    • (2012) Dev. Growth Differ. , vol.54 , pp. 535-545
    • Kawai, N.1    Ochiai, H.2    Sakuma, T.3    Yamada, L.4    Sawada, H.5    Yamamoto, T.6    Sasakura, Y.7
  • 26
    • 84884925278 scopus 로고    scopus 로고
    • Highly improved gene targeting by germline-specific Cas9 expression in Drosophila
    • Kondo, S. & Ueda, R. 2013. Highly improved gene targeting by germline-specific Cas9 expression in Drosophila. Genetics 195, 715-721.
    • (2013) Genetics , vol.195 , pp. 715-721
    • Kondo, S.1    Ueda, R.2
  • 28
    • 0032727636 scopus 로고    scopus 로고
    • Patterning the ascidian nervous system: structure, expression and transgenic analysis of the CiHox3 gene
    • Locascio, A., Aniello, F., Amoroso, A., Manzanares, M., Krumlauf, R. & Branno, M. 1999. Patterning the ascidian nervous system: structure, expression and transgenic analysis of the CiHox3 gene. Development 126, 4737-4738.
    • (1999) Development , vol.126 , pp. 4737-4738
    • Locascio, A.1    Aniello, F.2    Amoroso, A.3    Manzanares, M.4    Krumlauf, R.5    Branno, M.6
  • 29
    • 84884856342 scopus 로고    scopus 로고
    • Cas9 as a versatile tool for engineering biology
    • Mali, P., Esvelt, K. M. & Church, G. M. 2013. Cas9 as a versatile tool for engineering biology. Nat. Methods 10, 957-963.
    • (2013) Nat. Methods , vol.10 , pp. 957-963
    • Mali, P.1    Esvelt, K.M.2    Church, G.M.3
  • 31
    • 84892678484 scopus 로고    scopus 로고
    • Gene targeting technologies in rats: zinc finger nucleases, transcription activator-like effector nucleases, and clustered regularly interspaced short palindromic repeats
    • Mashimo, T. 2014. Gene targeting technologies in rats: zinc finger nucleases, transcription activator-like effector nucleases, and clustered regularly interspaced short palindromic repeats. Dev. Growth Differ. 56, 46-52.
    • (2014) Dev. Growth Differ. , vol.56 , pp. 46-52
    • Mashimo, T.1
  • 33
    • 84890787845 scopus 로고    scopus 로고
    • Simple and efficient CRISPR/Cas9-mediated targeted mutagenesis in Xenopus tropicalis
    • Nakayama, T., Fish, M. B., Fisher, M., Oomen-Hajagos, J., Thomsen, G. H. & Grainger, R. M. 2013. Simple and efficient CRISPR/Cas9-mediated targeted mutagenesis in Xenopus tropicalis. Genesis 51, 835-843.
    • (2013) Genesis , vol.51 , pp. 835-843
    • Nakayama, T.1    Fish, M.B.2    Fisher, M.3    Oomen-Hajagos, J.4    Thomsen, G.H.5    Grainger, R.M.6
  • 34
    • 50049125151 scopus 로고    scopus 로고
    • RNA interference by expressing short hairpin RNA in the Ciona intestinalis embryo
    • Nishiyama, A. & Fujiwara, S. 2008. RNA interference by expressing short hairpin RNA in the Ciona intestinalis embryo. Dev. Growth Differ. 50, 521-529.
    • (2008) Dev. Growth Differ. , vol.50 , pp. 521-529
    • Nishiyama, A.1    Fujiwara, S.2
  • 37
    • 84892677890 scopus 로고    scopus 로고
    • Targeted mutagenesis of multiple and paralogous genes in Xenopus laevis using two pairs of transcription activator-like effector nucleases
    • Sakane, Y., Sakuma, T., Kashiwagi, K., Kashiwagi, A., Yamamoto, T. & Suzuki, K. T. 2014. Targeted mutagenesis of multiple and paralogous genes in Xenopus laevis using two pairs of transcription activator-like effector nucleases. Dev. Growth Differ. 56, 108-114.
    • (2014) Dev. Growth Differ. , vol.56 , pp. 108-114
    • Sakane, Y.1    Sakuma, T.2    Kashiwagi, K.3    Kashiwagi, A.4    Yamamoto, T.5    Suzuki, K.T.6
  • 40
    • 84892680771 scopus 로고    scopus 로고
    • Nuclease-mediated genome editing: at the front-line of functional genomics technology
    • Sakuma, T. & Woltjen, K. 2014. Nuclease-mediated genome editing: at the front-line of functional genomics technology. Dev. Growth Differ. 56, 2-13.
    • (2014) Dev. Growth Differ. , vol.56 , pp. 2-13
    • Sakuma, T.1    Woltjen, K.2
  • 41
    • 34547605763 scopus 로고    scopus 로고
    • Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool
    • Sander, J. D., Zaback, P. Z., Joung, J. K., Voytas, D. F. & Dobbs, D. 2007. Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool. Nucleic Acids Res. 35, W599-W605.
    • (2007) Nucleic Acids Res. , vol.35 , pp. W599-W605
    • Sander, J.D.1    Zaback, P.Z.2    Joung, J.K.3    Voytas, D.F.4    Dobbs, D.5
  • 44
    • 0038610809 scopus 로고    scopus 로고
    • Germ-line transgenesis of the Tc1/mariner superfamily transposon Minos in Ciona intestinalis
    • Sasakura, Y., Awazu, S., Chiba, S. & Satoh, N. 2003. Germ-line transgenesis of the Tc1/mariner superfamily transposon Minos in Ciona intestinalis. Proc. Natl. Acad. Sci. USA 100, 7726-7730.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 7726-7730
    • Sasakura, Y.1    Awazu, S.2    Chiba, S.3    Satoh, N.4
  • 45
    • 26944480299 scopus 로고    scopus 로고
    • Transposon-mediated insertional mutagenesis revealed the functions of animal cellulose synthase in the ascidian Ciona intestinalis
    • Sasakura, Y., Nakashima, K., Awazu, S., Matsuoka, T., Nakayama, A., Azuma, J. & Satoh, N. 2005. Transposon-mediated insertional mutagenesis revealed the functions of animal cellulose synthase in the ascidian Ciona intestinalis. Proc. Natl. Acad. Sci. USA 102, 15134-15139.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 15134-15139
    • Sasakura, Y.1    Nakashima, K.2    Awazu, S.3    Matsuoka, T.4    Nakayama, A.5    Azuma, J.6    Satoh, N.7
  • 46
    • 75649117804 scopus 로고    scopus 로고
    • Maternal factor-mediated epigenetic gene silencing in the ascidian Ciona intestinalis
    • Sasakura, Y., Suzuki, M. M., Hozumi, A., Inaba, K. & Satoh, N. 2010. Maternal factor-mediated epigenetic gene silencing in the ascidian Ciona intestinalis. Mol. Genet. Genomics 283, 99-110.
    • (2010) Mol. Genet. Genomics , vol.283 , pp. 99-110
    • Sasakura, Y.1    Suzuki, M.M.2    Hozumi, A.3    Inaba, K.4    Satoh, N.5
  • 47
    • 84861414383 scopus 로고    scopus 로고
    • Retinoic acid-driven Hox1 is required in the epidermis for forming the otic/atrial placodes during ascidian metamorphosis
    • Sasakura, Y., Kanda, M., Ikeda, T., Horie, T., Kawai, N., Ogura, Y., Yoshida, R., Hozumi, A., Satoh, N. & Fujiwara, S. 2012. Retinoic acid-driven Hox1 is required in the epidermis for forming the otic/atrial placodes during ascidian metamorphosis. Development 139, 2156-2160.
    • (2012) Development , vol.139 , pp. 2156-2160
    • Sasakura, Y.1    Kanda, M.2    Ikeda, T.3    Horie, T.4    Kawai, N.5    Ogura, Y.6    Yoshida, R.7    Hozumi, A.8    Satoh, N.9    Fujiwara, S.10
  • 48
    • 0037379619 scopus 로고    scopus 로고
    • The ascidian tadpole larva: comparative molecular development and genomics
    • Satoh, N. 2003. The ascidian tadpole larva: comparative molecular development and genomics. Nat. Rev. Genet. 4, 285-295.
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 285-295
    • Satoh, N.1
  • 49
    • 0034898465 scopus 로고    scopus 로고
    • Action of morpholinos in Ciona embryos
    • Satou, Y., Imai, K. S. & Satoh, N. 2001. Action of morpholinos in Ciona embryos. Genesis 30, 103-106.
    • (2001) Genesis , vol.30 , pp. 103-106
    • Satou, Y.1    Imai, K.S.2    Satoh, N.3
  • 52
    • 84892680659 scopus 로고    scopus 로고
    • Versatile strategy for isolating transcription activator-like effector nuclease-mediated knockout mutants in Caenorhabditis elegans
    • Sugi, T., Sakuma, T., Ohtani, Y. & Yamamoto, T. 2014. Versatile strategy for isolating transcription activator-like effector nuclease-mediated knockout mutants in Caenorhabditis elegans. Dev. Growth Differ. 56, 78-85.
    • (2014) Dev. Growth Differ. , vol.56 , pp. 78-85
    • Sugi, T.1    Sakuma, T.2    Ohtani, Y.3    Yamamoto, T.4
  • 54
    • 84891509001 scopus 로고    scopus 로고
    • Tissue-specific and ubiquitous gene knockouts by TALEN electroporation provide new approaches to investigating gene function in Ciona
    • Treen, N., Yoshida, K., Sakuma, T., Sasaki, H., Kawai, N., Yamamoto, T. & Sasakura, Y. 2014. Tissue-specific and ubiquitous gene knockouts by TALEN electroporation provide new approaches to investigating gene function in Ciona. Development 141, 481-487.
    • (2014) Development , vol.141 , pp. 481-487
    • Treen, N.1    Yoshida, K.2    Sakuma, T.3    Sasaki, H.4    Kawai, N.5    Yamamoto, T.6    Sasakura, Y.7
  • 56
    • 84857097177 scopus 로고    scopus 로고
    • RNA-guided genetic silencing systems in bacteria and archaea
    • Wiedenheft, B., Sternberg, S. H. & Doudna, J. A. 2012. RNA-guided genetic silencing systems in bacteria and archaea. Nature 482, 331-338.
    • (2012) Nature , vol.482 , pp. 331-338
    • Wiedenheft, B.1    Sternberg, S.H.2    Doudna, J.A.3
  • 57
    • 84884962826 scopus 로고    scopus 로고
    • RNA-guided genome editing in plants using CRISPR-Cas system
    • Xie, K. & Yang, Y. 2013. RNA-guided genome editing in plants using CRISPR-Cas system. Mol. Plant 6, 1975-1983.
    • (2013) Mol. Plant , vol.6 , pp. 1975-1983
    • Xie, K.1    Yang, Y.2
  • 58
    • 84900841384 scopus 로고    scopus 로고
    • Germ cell mutations of the ascidian Ciona intestinalis with TALE nucleases
    • Yoshida, K., Treen, N., Hozumi, A., Sakuma, T., Yamamoto, T. & Sasakura, Y. 2014. Germ cell mutations of the ascidian Ciona intestinalis with TALE nucleases. Genesis 52, 431-439.
    • (2014) Genesis , vol.52 , pp. 431-439
    • Yoshida, K.1    Treen, N.2    Hozumi, A.3    Sakuma, T.4    Yamamoto, T.5    Sasakura, Y.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.