메뉴 건너뛰기




Volumn 31, Issue 1, 2014, Pages 19-33

ICR noncoding RNA expression controls imprinting and DNA replication at the Dlk1-Dio3 domain

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE; UNTRANSLATED RNA; DLK1 PROTEIN, MOUSE; IODIDE PEROXIDASE; IODOTHYRONINE DEIODINASE TYPE III; SIGNAL PEPTIDE;

EID: 84907983109     PISSN: 15345807     EISSN: 18781551     Source Type: Journal    
DOI: 10.1016/j.devcel.2014.08.009     Document Type: Article
Times cited : (63)

References (62)
  • 3
    • 84860885909 scopus 로고    scopus 로고
    • A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy
    • Cabianca D.S., Casa V., Bodega B., Xynos A., Ginelli E., Tanaka Y., Gabellini D. A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy. Cell 2012, 149:819-831.
    • (2012) Cell , vol.149 , pp. 819-831
    • Cabianca, D.S.1    Casa, V.2    Bodega, B.3    Xynos, A.4    Ginelli, E.5    Tanaka, Y.6    Gabellini, D.7
  • 4
    • 84876836223 scopus 로고    scopus 로고
    • Modification of enhancer chromatin: what, how, and why?
    • Calo E., Wysocka J. Modification of enhancer chromatin: what, how, and why?. Mol. Cell 2013, 49:825-837.
    • (2013) Mol. Cell , vol.49 , pp. 825-837
    • Calo, E.1    Wysocka, J.2
  • 6
    • 2442509817 scopus 로고    scopus 로고
    • Paternal uniparental isodisomy for chromosome 14 in a patient with a normal 46,XY karyotype
    • Chu C., Schwartz S., McPherson E. Paternal uniparental isodisomy for chromosome 14 in a patient with a normal 46,XY karyotype. Am. J. Med. Genet. A. 2004, 127A:167-171.
    • (2004) Am. J. Med. Genet. A. , vol.127 A , pp. 167-171
    • Chu, C.1    Schwartz, S.2    McPherson, E.3
  • 7
    • 0028258604 scopus 로고
    • Optimal preparation of preimplantation embryo interphase nuclei for analysis by fluorescence in-situ hybridization
    • Coonen E., Dumoulin J.C., Ramaekers F.C., Hopman A.H. Optimal preparation of preimplantation embryo interphase nuclei for analysis by fluorescence in-situ hybridization. Hum. Reprod. 1994, 9:533-537.
    • (1994) Hum. Reprod. , vol.9 , pp. 533-537
    • Coonen, E.1    Dumoulin, J.C.2    Ramaekers, F.C.3    Hopman, A.H.4
  • 12
    • 0031844174 scopus 로고    scopus 로고
    • Altered imprinted gene methylation and expression in completely ES cell-derived mouse fetuses: association with aberrant phenotypes
    • Dean W., Bowden L., Aitchison A., Klose J., Moore T., Meneses J.J., Reik W., Feil R. Altered imprinted gene methylation and expression in completely ES cell-derived mouse fetuses: association with aberrant phenotypes. Development 1998, 125:2273-2282.
    • (1998) Development , vol.125 , pp. 2273-2282
    • Dean, W.1    Bowden, L.2    Aitchison, A.3    Klose, J.4    Moore, T.5    Meneses, J.J.6    Reik, W.7    Feil, R.8
  • 13
    • 33846972618 scopus 로고    scopus 로고
    • Differential histone modifications mark mouse imprinting control regions during spermatogenesis
    • Delaval K., Govin J., Cerqueira F., Rousseaux S., Khochbin S., Feil R. Differential histone modifications mark mouse imprinting control regions during spermatogenesis. EMBO J. 2007, 26:720-729.
    • (2007) EMBO J. , vol.26 , pp. 720-729
    • Delaval, K.1    Govin, J.2    Cerqueira, F.3    Rousseaux, S.4    Khochbin, S.5    Feil, R.6
  • 14
    • 84861095603 scopus 로고    scopus 로고
    • Topological domains in mammalian genomes identified by analysis of chromatin interactions
    • Dixon J.R., Selvaraj S., Yue F., Kim A., Li Y., Shen Y., Hu M., Liu J.S., Ren B. Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 2012, 485:376-380.
    • (2012) Nature , vol.485 , pp. 376-380
    • Dixon, J.R.1    Selvaraj, S.2    Yue, F.3    Kim, A.4    Li, Y.5    Shen, Y.6    Hu, M.7    Liu, J.S.8    Ren, B.9
  • 15
  • 17
    • 79960530899 scopus 로고    scopus 로고
    • Genomic imprinting: the emergence of an epigenetic paradigm
    • Ferguson-Smith A.C. Genomic imprinting: the emergence of an epigenetic paradigm. Nat. Rev. Genet. 2011, 12:565-575.
    • (2011) Nat. Rev. Genet. , vol.12 , pp. 565-575
    • Ferguson-Smith, A.C.1
  • 21
    • 0037444227 scopus 로고    scopus 로고
    • Asynchronous replication timing of imprinted loci is independent of DNA methylation, but consistent with differential subnuclear localization
    • Gribnau J., Hochedlinger K., Hata K., Li E., Jaenisch R. Asynchronous replication timing of imprinted loci is independent of DNA methylation, but consistent with differential subnuclear localization. Genes Dev. 2003, 17:759-773.
    • (2003) Genes Dev. , vol.17 , pp. 759-773
    • Gribnau, J.1    Hochedlinger, K.2    Hata, K.3    Li, E.4    Jaenisch, R.5
  • 22
    • 84856239588 scopus 로고    scopus 로고
    • Amplification of siRNA in Caenorhabditis elegans generates a transgenerational sequence-targeted histone H3 lysine 9 methylation footprint
    • Gu S.G., Pak J., Guang S., Maniar J.M., Kennedy S., Fire A. Amplification of siRNA in Caenorhabditis elegans generates a transgenerational sequence-targeted histone H3 lysine 9 methylation footprint. Nat. Genet. 2012, 44:157-164.
    • (2012) Nat. Genet. , vol.44 , pp. 157-164
    • Gu, S.G.1    Pak, J.2    Guang, S.3    Maniar, J.M.4    Kennedy, S.5    Fire, A.6
  • 23
    • 84888363048 scopus 로고    scopus 로고
    • Hormone-regulated transcriptomes: lessons learned from estrogen signaling pathways in breast cancer cells
    • Hah N., Kraus W.L. Hormone-regulated transcriptomes: lessons learned from estrogen signaling pathways in breast cancer cells. Mol. Cell. Endocrinol. 2014, 382:652-664.
    • (2014) Mol. Cell. Endocrinol. , vol.382 , pp. 652-664
    • Hah, N.1    Kraus, W.L.2
  • 25
    • 69449092535 scopus 로고    scopus 로고
    • Histone methylation is mechanistically linked to DNA methylation at imprinting control regions in mammals
    • Henckel A., Nakabayashi K., Sanz L.A., Feil R., Hata K., Arnaud P. Histone methylation is mechanistically linked to DNA methylation at imprinting control regions in mammals. Hum. Mol. Genet. 2009, 18:3375-3383.
    • (2009) Hum. Mol. Genet. , vol.18 , pp. 3375-3383
    • Henckel, A.1    Nakabayashi, K.2    Sanz, L.A.3    Feil, R.4    Hata, K.5    Arnaud, P.6
  • 26
    • 77956192737 scopus 로고    scopus 로고
    • Genomic imprinting and human disease
    • Hirasawa R., Feil R. Genomic imprinting and human disease. Essays Biochem. 2010, 48:187-200.
    • (2010) Essays Biochem. , vol.48 , pp. 187-200
    • Hirasawa, R.1    Feil, R.2
  • 28
    • 33846699083 scopus 로고    scopus 로고
    • A hexanucleotide element directs microRNA nuclear import
    • Hwang H.W., Wentzel E.A., Mendell J.T. A hexanucleotide element directs microRNA nuclear import. Science 2007, 315:97-100.
    • (2007) Science , vol.315 , pp. 97-100
    • Hwang, H.W.1    Wentzel, E.A.2    Mendell, J.T.3
  • 29
    • 77954156503 scopus 로고    scopus 로고
    • The IG-DMR and the MEG3-DMR at human chromosome 14q32.2: hierarchical interaction and distinct functional properties as imprinting control centers
    • Kagami M., O'Sullivan M.J., Green A.J., Watabe Y., Arisaka O., Masawa N., Matsuoka K., Fukami M., Matsubara K., Kato F., et al. The IG-DMR and the MEG3-DMR at human chromosome 14q32.2: hierarchical interaction and distinct functional properties as imprinting control centers. PLoS Genet. 2010, 6:e1000992.
    • (2010) PLoS Genet. , vol.6 , pp. e1000992
    • Kagami, M.1    O'Sullivan, M.J.2    Green, A.J.3    Watabe, Y.4    Arisaka, O.5    Masawa, N.6    Matsuoka, K.7    Fukami, M.8    Matsubara, K.9    Kato, F.10
  • 32
    • 84876580247 scopus 로고    scopus 로고
    • New insights into establishment and maintenance of DNA methylation imprints in mammals
    • Kelsey G., Feil R. New insights into establishment and maintenance of DNA methylation imprints in mammals. Philos. Trans. R. Soc. Lond. B Biol. Sci. 2013, 368:20110336.
    • (2013) Philos. Trans. R. Soc. Lond. B Biol. Sci. , vol.368 , pp. 20110336
    • Kelsey, G.1    Feil, R.2
  • 33
    • 0032963598 scopus 로고    scopus 로고
    • Parental allele-specific chromatin configuration in a boundary-imprinting-control element upstream of the mouse H19 gene
    • Khosla S., Aitchison A., Gregory R., Allen N.D., Feil R. Parental allele-specific chromatin configuration in a boundary-imprinting-control element upstream of the mouse H19 gene. Mol. Cell. Biol. 1999, 19:2556-2566.
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 2556-2566
    • Khosla, S.1    Aitchison, A.2    Gregory, R.3    Allen, N.D.4    Feil, R.5
  • 37
    • 84874368349 scopus 로고    scopus 로고
    • Activating RNAs associate with Mediator to enhance chromatin architecture and transcription
    • Lai F., Orom U.A., Cesaroni M., Beringer M., Taatjes D.J., Blobel G.A., Shiekhattar R. Activating RNAs associate with Mediator to enhance chromatin architecture and transcription. Nature 2013, 494:497-501.
    • (2013) Nature , vol.494 , pp. 497-501
    • Lai, F.1    Orom, U.A.2    Cesaroni, M.3    Beringer, M.4    Taatjes, D.J.5    Blobel, G.A.6    Shiekhattar, R.7
  • 40
    • 0042856381 scopus 로고    scopus 로고
    • Asymmetric regulation of imprinting on the maternal and paternal chromosomes at the Dlk1-Gtl2 imprinted cluster on mouse chromosome 12
    • Lin S.P., Youngson N., Takada S., Seitz H., Reik W., Paulsen M., Cavaille J., Ferguson-Smith A.C. Asymmetric regulation of imprinting on the maternal and paternal chromosomes at the Dlk1-Gtl2 imprinted cluster on mouse chromosome 12. Nat. Genet. 2003, 35:97-102.
    • (2003) Nat. Genet. , vol.35 , pp. 97-102
    • Lin, S.P.1    Youngson, N.2    Takada, S.3    Seitz, H.4    Reik, W.5    Paulsen, M.6    Cavaille, J.7    Ferguson-Smith, A.C.8
  • 41
    • 33846977748 scopus 로고    scopus 로고
    • Differential regulation of imprinting in the murine embryo and placenta by the Dlk1-Dio3 imprinting control region
    • Lin S.P., Coan P., da Rocha S.T., Seitz H., Cavaille J., Teng P.W., Takada S., Ferguson-Smith A.C. Differential regulation of imprinting in the murine embryo and placenta by the Dlk1-Dio3 imprinting control region. Development 2007, 134:417-426.
    • (2007) Development , vol.134 , pp. 417-426
    • Lin, S.P.1    Coan, P.2    da Rocha, S.T.3    Seitz, H.4    Cavaille, J.5    Teng, P.W.6    Takada, S.7    Ferguson-Smith, A.C.8
  • 44
    • 77957168933 scopus 로고    scopus 로고
    • Eukaryotic DNA replication origins: many choices for appropriate answers
    • Méchali M. Eukaryotic DNA replication origins: many choices for appropriate answers. Nat. Rev. Mol. Cell Biol. 2010, 11:728-738.
    • (2010) Nat. Rev. Mol. Cell Biol. , vol.11 , pp. 728-738
    • Méchali, M.1
  • 45
    • 84858800729 scopus 로고    scopus 로고
    • Control of ground-state pluripotency by allelic regulation of Nanog
    • Miyanari Y., Torres-Padilla M.E. Control of ground-state pluripotency by allelic regulation of Nanog. Nature 2012, 483:470-473.
    • (2012) Nature , vol.483 , pp. 470-473
    • Miyanari, Y.1    Torres-Padilla, M.E.2
  • 46
    • 84870182699 scopus 로고    scopus 로고
    • Noncoding transcription at enhancers: general principles and functional models
    • Natoli G., Andrau J.C. Noncoding transcription at enhancers: general principles and functional models. Annu. Rev. Genet. 2012, 46:1-19.
    • (2012) Annu. Rev. Genet. , vol.46 , pp. 1-19
    • Natoli, G.1    Andrau, J.C.2
  • 48
    • 84884220048 scopus 로고    scopus 로고
    • Long noncoding RNAs usher in a new era in the biology of enhancers
    • Ørom U.A., Shiekhattar R. Long noncoding RNAs usher in a new era in the biology of enhancers. Cell 2013, 154:1190-1193.
    • (2013) Cell , vol.154 , pp. 1190-1193
    • Ørom, U.A.1    Shiekhattar, R.2
  • 49
    • 84855812755 scopus 로고    scopus 로고
    • Beckwith-Wiedemann syndrome caused by maternally inherited mutation of an OCT-binding motif in the IGF2/H19-imprinting control region, ICR1
    • Poole R.L., Leith D.J., Docherty L.E., Shmela M.E., Gicquel C., Splitt M., Temple I.K., Mackay D.J. Beckwith-Wiedemann syndrome caused by maternally inherited mutation of an OCT-binding motif in the IGF2/H19-imprinting control region, ICR1. Eur. J. Hum. Genet. 2012, 20:240-243.
    • (2012) Eur. J. Hum. Genet. , vol.20 , pp. 240-243
    • Poole, R.L.1    Leith, D.J.2    Docherty, L.E.3    Shmela, M.E.4    Gicquel, C.5    Splitt, M.6    Temple, I.K.7    Mackay, D.J.8
  • 51
    • 84881479679 scopus 로고    scopus 로고
    • Enhancer-derived RNAs: 'spicing up' transcription programs
    • Redmond A.M., Carroll J.S. Enhancer-derived RNAs: 'spicing up' transcription programs. EMBO J. 2013, 32:2096-2098.
    • (2013) EMBO J. , vol.32 , pp. 2096-2098
    • Redmond, A.M.1    Carroll, J.S.2
  • 52
    • 79960518612 scopus 로고    scopus 로고
    • Methylation dynamics of IG-DMR and Gtl2-DMR during murine embryonic and placental development
    • Sato S., Yoshida W., Soejima H., Nakabayashi K., Hata K. Methylation dynamics of IG-DMR and Gtl2-DMR during murine embryonic and placental development. Genomics 2011, 98:120-127.
    • (2011) Genomics , vol.98 , pp. 120-127
    • Sato, S.1    Yoshida, W.2    Soejima, H.3    Nakabayashi, K.4    Hata, K.5
  • 55
    • 55349100420 scopus 로고    scopus 로고
    • Polycomb group proteins Ezh2 and Rnf2 direct genomic contraction and imprinted repression in early mouse embryos
    • Terranova R., Yokobayashi S., Stadler M.B., Otte A.P., van Lohuizen M., Orkin S.H., Peters A.H. Polycomb group proteins Ezh2 and Rnf2 direct genomic contraction and imprinted repression in early mouse embryos. Dev. Cell 2008, 15:668-679.
    • (2008) Dev. Cell , vol.15 , pp. 668-679
    • Terranova, R.1    Yokobayashi, S.2    Stadler, M.B.3    Otte, A.P.4    van Lohuizen, M.5    Orkin, S.H.6    Peters, A.H.7
  • 58
    • 26244454608 scopus 로고    scopus 로고
    • Distinctive nuclear organisation of centromeres and regions involved in pluripotency in human embryonic stem cells
    • Wiblin A.E., Cui W., Clark A.J., Bickmore W.A. Distinctive nuclear organisation of centromeres and regions involved in pluripotency in human embryonic stem cells. J.Cell Sci. 2005, 118:3861-3868.
    • (2005) J.Cell Sci. , vol.118 , pp. 3861-3868
    • Wiblin, A.E.1    Cui, W.2    Clark, A.J.3    Bickmore, W.A.4
  • 59
    • 79959950773 scopus 로고    scopus 로고
    • Inhibition of glycogen synthase kinase-3 alleviates Tcf3 repression of the pluripotency network and increases embryonic stem cell resistance to differentiation
    • Wray J., Kalkan T., Gomez-Lopez S., Eckardt D., Cook A., Kemler R., Smith A. Inhibition of glycogen synthase kinase-3 alleviates Tcf3 repression of the pluripotency network and increases embryonic stem cell resistance to differentiation. Nat. Cell Biol. 2011, 13:838-845.
    • (2011) Nat. Cell Biol. , vol.13 , pp. 838-845
    • Wray, J.1    Kalkan, T.2    Gomez-Lopez, S.3    Eckardt, D.4    Cook, A.5    Kemler, R.6    Smith, A.7
  • 60
    • 0344845415 scopus 로고    scopus 로고
    • BMP induction of Id proteins suppresses differentiation and sustains embryonic stem cell self-renewal in collaboration with STAT3
    • Ying Q.L., Nichols J., Chambers I., Smith A. BMP induction of Id proteins suppresses differentiation and sustains embryonic stem cell self-renewal in collaboration with STAT3. Cell 2003, 115:281-292.
    • (2003) Cell , vol.115 , pp. 281-292
    • Ying, Q.L.1    Nichols, J.2    Chambers, I.3    Smith, A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.