Modification of vectors for functional genomic analysis in plants

Genetics and Molecular Research

Volumn 13, Issue 3, 2014, Pages 7815-7825

  Li, J T ^a   Yu, G ^a   Sun, X H ^a   Jia, C G ^a   Du, Q ^b   Li, Q Y ^b   Pan, H Y ^a  

^a JILIN UNIVERSITY   (China)

^b JILIN ACADEMY OF AGRICULTURAL SCIENCES   (China)

Author keywords

Plant binary expression vector; Stable expression; Stress inducible expression; Subcellular localization

Indexed keywords

ENHANCED GREEN FLUORESCENT PROTEIN; BETA GLUCURONIDASE; GREEN FLUORESCENT PROTEIN; PRIMER DNA;

ARABIDOPSIS THALIANA; ARTICLE; CELLULAR DISTRIBUTION; EXPRESSION VECTOR; FUNCTIONAL GENOMICS; GENE EXPRESSION SYSTEM; GENE FUSION; GENOME ANALYSIS; NICOTIANA BENTHAMIANA; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GENOME; PROMOTER REGION; REPORTER GENE; STABLE EXPRESSION; TRANSIENT EXPRESSION; CELL FRACTIONATION; GENE VECTOR; GENETICS; METABOLISM; POLYMERASE CHAIN REACTION;

BASE SEQUENCE; DNA PRIMERS; GENES, REPORTER; GENETIC VECTORS; GENOME, PLANT; GLUCURONIDASE; GREEN FLUORESCENT PROTEINS; POLYMERASE CHAIN REACTION; SUBCELLULAR FRACTIONS;

EID: 84907856090     PISSN: None     EISSN: 16765680     Source Type: Journal    
DOI: 10.4238/2014.September.26.20     Document Type: Article

References (28)

1. Chen PY, Wang CK, Soong SC and To KY (2002). Complete sequence of the binary vector pBI121 and its application in cloning T-DNA insertion from transgenic plants. Mol. Breed.11: 287-293.
2. Chen S, Songkumarn P, Liu J and Wang GL (2009). A versatile zero background T-vector system for gene cloning and functional genomics. Plant. Physiol. 150: 1111-1121.
3. Cormack BP, Valdivia RH and Falkow S (1996). FACS-optimized mutants of the green fluorescent protein (GFP). Gene 173: 33-38.
4. Cornejo MJ, Luth D, Blankenship KM, Anderson OD, et al. (1993). Activity of a maize ubiquitin promoter in transgenic rice. Plant Mol. Biol. 23: 567-581.
5. Curtis MD and Grossniklaus U (2003). A gateway cloning vector set for high-throughput functional analysis of genes in planta. Plant Physiol. 133: 462-469.
6. Earley KW, Haag JR, Pontes O, Opper K, et al. (2006). Gateway-compatible vectors for plant functional genomics and proteomics. Plan. J. 45: 616-629.
7. Gaj T, Gersbach CA and Barbas CF, III (2013). ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering. Trends Biotechnol. 31: 397-405.
8. Hsieh TH, Lee JT, Charng YY and Chan MT (2002). Tomato plants ectopically expressing Arabidopsis CBF1 show enhanced resistance to water deficit stress. Plant Physiol. 130: 618-626.
9. Jefferson RA (1987). Assaying chimeric genes in plants: the GUS gene fusion system. Plant Mol. Biol. Rep. 5: 387-405.
10. Jefferson RA (1989). The GUS reporter gene system. Nature 342: 837-838.
11. Jefferson RA, Kavanagh TA and Bevan MW (1987). GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J. 6: 3901-3907.
12. Kasuga M, Liu Q, Miura S, Yamaguchi-Shinozaki K, et al. (1999). Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor. Nat. Biotechnol. 17: 287-291.
13. Kasuga M, Miura S, Shinozaki K and Yamaguchi-Shinozaki K (2004). A combination of the Arabidopsis DREB1A gene and stress-inducible rd29A promoter improved drought- and low-temperature stress tolerance in tobacco by gene transfer. Plant Cell Physiol. 45: 346-350.
14. Krysan PJ, Young JC and Sussman MR (1999). T-DNA as an insertional mutagen in Arabidopsis. Plant Cell 11: 2283-2290.
15. Li T, Huang S, Zhao X, Wright DA, et al. (2011). Modularly assembled designer TAL effector nucleases for targeted gene knockout and gene replacement in eukaryotes. Nucleic. Acids. Res. 39: 6315-6325.
16. Li XJ, Qian WQ, Zhao YS, Wang CL, et al. (2012). Antisilencing role of the RNA-directed DNA methylation pathway and a histone acetyltransferase in Arabidopsis. Proc. Natl. Acad. Sci. U. S. A. 109: 11425-11430.
17. Liu Q, Wang J, Miki D, Xia R, et al. (2010). DNA replication factor C1 mediates genomic stability and transcriptional gene silencing in Arabidopsis. Plant Cell 22: 2336-2352.
18. Peters S, Egert A, Stieger B and Keller F (2010). Functional identification of Arabidopsis ATSIP2 (At3g57520) as an alkaline alpha-galactosidase with a substrate specificity for raffinose and an apparent sink-specific expression pattern. Plant Cell Physiol. 51: 1815-1819.
19. Rybel BD, Berg W, Lokerse AS, Liao CY, et al. (2011). A versatile set of ligation-independent cloning vectors for functional studies in plants. Plant. Physiol. 156: 1292-1299.
20. Stanislawska-Sachadyn A, Sachadyn P, Ihle K, Sydorczuk C, et al. (2006). The construction of bifunctional fusion proteins consisting of MutS and GFP. J. Biotechnol. 121: 134-143.
21. Wang CT, Yin XL, Kong XG, Li WS, et al. (2013). A series of TA-based and zero-background vectors for plant functional genomics. PLoS One 8: e59576.
22. Wang CX, Jing RL, Mao XG, Chang XP, et al. (2011). TaABC1, a member of the activity of bc1 complex protein kinase family from common wheat, confers enhanced tolerance to abiotic stresses in Arabidopsis. J. Exp. Bot. 62: 1299-1311.
23. Weigel D and Glazebrook J (2006). Transformation of Agrobacterium Using the Freeze-thaw Method. Cold Spring Harbor Protocol, Cold Spring Harbor.
24. Yamaguchi-Shinozaki K and Shinozaki K (1994). A novel cis-acting element in an Arabidopsis gene is involved in responsiveness to drought, low-temperature, or high-salt stress. Plant Cell 6: 251-264.
25. Yan P, Shen W, Gao X, Li X, et al. (2012). High-throughput construction of intron-containing hairpin RNA vectors for RNAi in plants. PLoS One 7: e38186.
26. Yang L, Ji W, Gao P, Li Y, et al. (2012). GsAPK, an ABA-activated and calcium-independent SnRK2-type kinase from G. soja, mediates the regulation of plant tolerance to salinity and ABA stress. PLoS One 7: e33838.
27. Yin Y, Wang ZY, Mora-Garcia S, Li J, et al. (2002). BES1 accumulates in the nucleus in response to brassinosteroids to regulate gene expression and promote stem elongation. Cell 109: 181-191.
28. Zhang X, Henriques R, Lin SS, Niu QW, et al. (2006). Agrobacterium-mediated transformation of Arabidopsis thaliana using the floral dip method. Nat. Protoc. 1: 641-646.