Evidence against translational repression by the carboxyltransferase component of Escherichia coli acetyl coenzyme a carboxylase

Journal of Bacteriology

Volumn 196, Issue 21, 2014, Pages 3768-3775

  Smith, Alexander C ^a   Cronan, John E ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACETYL COENZYME A CARBOXYLASE; CARBOXYLTRANSFERASE; MESSENGER RNA; RNA POLYMERASE; T7 POLYMERASE; TETRAMER; UNCLASSIFIED DRUG; ESCHERICHIA COLI PROTEIN;

ACCA GENE; ACCD GENE; ARTICLE; BACTERIAL GENE; CONTROLLED STUDY; ENZYME BINDING; ESCHERICHIA COLI; GENE OVEREXPRESSION; IN VITRO STUDY; MOLECULAR DYNAMICS; NONHUMAN; PROTEIN RNA BINDING; RIBOSOME; TRANSLATION REGULATION; ENZYMOLOGY; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; PHYSIOLOGY; PROTEIN PROCESSING;

ACETYL-COA CARBOXYLASE; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; GENE EXPRESSION REGULATION, ENZYMOLOGIC; PROTEIN MODIFICATION, TRANSLATIONAL; RNA, MESSENGER;

EID: 84907856065     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.02091-14     Document Type: Article

References (29)

1. Cronan JE, Jr, Waldrop GL. 2002. Multi-subunit acetyl-CoA carboxylases. Prog. Lipid Res. 41:407-435. http://dx.doi.org/10.1016/S0163-7827 (02)00007-3.
2. Bilder P, Lightle S, Bainbridge G, Ohren J, Finzel B, Sun F, Holley S, Al-Kassim L, Spessard C, Melnick M, Newcomer M, Waldrop GL. 2006. The structure of the carboxyltransferase component of acetyl-CoA carboxylase reveals a zinc-binding motif unique to the bacterial enzyme. Biochemistry 45:1712-1722. http://dx.doi.org/10.1021/bi0520479.
3. Guchhait RB, Polakis SE, Dimroth P, Stoll E, Moss J, Lane MD. 1974. Acetyl coenzyme A carboxylase system of Escherichia coli. Purification and properties of the biotin carboxylase, carboxyltransferase, and carboxyl carrier protein components. J. Biol. Chem. 249:6633-6645.
4. Li SJ, Cronan JE, Jr. 1992. The genes encoding the two carboxyltransferase subunits of Escherichia coli acetyl-CoA carboxylase. J. Biol. Chem. 267:16841-16847.
5. Li SJ, Cronan JE, Jr. 1992. The gene encoding the biotin carboxylase subunit of Escherichia coli acetyl-CoA carboxylase. J. Biol. Chem. 267: 855-863.
6. Choi-Rhee E, Cronan JE. 2003. The biotin carboxylase-biotin carboxyl carrier protein complex of Escherichia coli acetyl-CoA carboxylase. J. Biol. Chem. 278:30806-30812. http://dx.doi.org/10.1074/jbc. M302507200.
7. Ishihama Y, Schmidt T, Rappsilber J, Mann M, Hartl FU, Kerner MJ, Frishman D. 2008. Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9:102. http://dx.doi.org/10.1186/1471-2164-9-102.
8. Kuntumalla S, Braisted JC, Huang ST, Parmar PP, Clark DJ, Alami H, Zhang Q, Donohue-Rolfe A, Tzipori S, Fleischmann RD, Peterson SN, Pieper R. 2009. Comparison of two label-free global quantitation methods, APEX and 2D gel electrophoresis, applied to the Shigella dysenteriae proteome. Proteome Sci. 7:22. http://dx.doi.org/10.1186/1477-5956-7-22.
9. Lu P, Vogel C, Wang R, Yao X, Marcotte EM. 2007. Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. Nat. Biotechnol. 25:117-124. http://dx.doi.org/10.1038/nbt1270.
10. Li GW, Burkhardt D, Gross C, Weissman JS. 2014. Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources. Cell 157:624-635. http://dx.doi.org/10.1016/j.cell.2014.02.033.
11. Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H. 2006. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2:2006.0008. http://dx.doi.org/10.1038/msb4100050.
12. Meades G, Jr, Benson BK, Grove A, Waldrop GL. 2010. A tale of two functions: enzymatic activity and translational repression by carboxyltransferase. Nucleic Acids Res. 38:1217-1227. http://dx.doi.org/10.1093/nar/gkp1079.
13. Gowrishankar J, Harinarayanan R. 2004. Why is transcription coupled to translation in bacteria? Mol. Microbiol. 54:598-603. http://dx.doi.org/10.1111/j.1365-2958.2004.04289.x.
14. Squires CL, Zaporojets D. 2000. Proteins shared by the transcription and translation machines. Annu. Rev. Microbiol. 54:775-798. http://dx.doi.org/10.1146/annurev.micro.54.1.775.
15. Mitarai N, Sneppen K, Pedersen S. 2008. Ribosome collisions and translation efficiency: optimization by codon usage andmRNAdestabilization. J. Mol. Biol. 382:236-245. http://dx.doi.org/10.1016/j.jmb.2008.06.068.
16. Noll H. 2008. The discovery of polyribosomes. Bioessays 30:1220-1234. http://dx.doi.org/10.1002/bies.20846.
17. Peters JM, VangeloffAD, Landick R. 2011. Bacterial transcription terminators: the RNA 3=-end chronicles. J. Mol. Biol. 412:793-813. http://dx.doi.org/10.1016/j.jmb.2011.03.036.
18. Roberts JW. 2010. Molecular biology. Syntheses that stay together. Science 328:436-437. http://dx.doi.org/10.1126/science.1189971.
19. Koslover DJ, Fazal FM, Mooney RA, Landick R, Block SM. 2012. Binding and translocation of termination factor Rho studied at the singlemolecule level. J. Mol. Biol. 423:664-676. http://dx.doi.org/10.1016/j.jmb.2012.07.027.
20. Blanchard CZ, Waldrop GL. 1998. Overexpression and kinetic characterization of the carboxyltransferase component of acetyl-CoA carboxylase. J. Biol. Chem. 273:19140-19145. http://dx.doi.org/10.1074/jbc.273.30.19140.
21. Woodcock DM, Crowther PJ, Doherty J, Jefferson S, DeCruz E, Noyer-Weidner M, Smith SS, Michael MZ, Graham MW. 1989. Quantitative evaluation of Escherichia coli host strains for tolerance to cytosine methylation in plasmid and phage recombinants. Nucleic Acids Res. 17:3469-3478. http://dx.doi.org/10.1093/nar/17.9.3469.
22. Tabor S. 2001. Expression using the T7 RNA polymerase/promoter system. Curr. Protoc. Mol. Biol. Chapter 16:Unit 16.2. http://dx.doi.org/10.1002/0471142727.mb1602s11.
23. Studier FW, Moffatt BA. 1986. Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. J. Mol. Biol. 189: 113-130. http://dx.doi.org/10.1016/0022-2836(86)90385-2.
24. Vogel HJ, Bonner DM. 1956. Acetylornithinase of Escherichia coli: partial purification and some properties. J. Biol. Chem. 218:97-106.
25. Chamberlin MJ, Ring J. 1972. Studies of the binding of Escherichia coli RNA polymerase to DNA. V. T7 RNA chain initiation by enzyme-DNA complexes. J. Mol. Biol. 70:221-237.
26. Hoang TT, Ma Y, Stern RJ, McNeil MR, Schweizer HP. 1999. Construction and use of low-copy number T7 expression vectors for purification of problem proteins: purification of Mycobacterium tuberculosis RmlD and Pseudomonas aeruginosa LasI and RhlI proteins, and functional analysis of purified RhlI. Gene 237:361-371. http://dx.doi.org/10.1016/S0378-1119(99)00331-5.
27. WycuffDR, Matthews KS. 2000. Generation of an AraC-araBAD promoter-regulated T7 expression system. Anal. Biochem. 277:67-73. http://dx.doi.org/10.1006/abio.1999.4385.
28. Brunner M, Bujard H. 1987. Promoter recognition and promoter strength in the Escherichia coli system. EMBO J. 6:3139-3144.
29. Castro-Roa D, Zenkin N. 2012. In vitro experimental system for analysis of transcription-translation coupling. Nucleic Acids Res. 40:e45. http://dx.doi.org/10.1093/nar/gkr1262.