-
1
-
-
0028139089
-
Positional cloning of the mouse obese gene and its human homologue
-
Zhang Y, Proenca R, Maffei M, Barone M, Leopold L, Friedman JM. Positional cloning of the mouse obese gene and its human homologue. Nature. 1994;372:425– 432.
-
(1994)
Nature
, vol.372
-
-
Zhang, Y.1
Proenca, R.2
Maffei, M.3
Barone, M.4
Leopold, L.5
Friedman, J.M.6
-
2
-
-
0031443366
-
Melanocortin receptors in leptin effects
-
[2] Seeley RJ, Yagaloff KA, Fisher SL, Burn P, Thiele TE, van Dijk G, et al. Melanocortin receptors in leptin effects. Nature. 1997;390:349–349.
-
(1997)
Nature
, vol.390
, pp. 349
-
-
Seeley, R.J.1
Yagaloff, K.A.2
Fisher, S.L.3
Burn, P.4
Thiele, T.E.5
Van Dijk, G.6
-
3
-
-
0027227288
-
Molecular cloning, expression, and gene localization of a fourth melanocortin receptor
-
[3] Gantz I, Miwa H, Konda Y, Shimoto Y, Tashiro T, Watson S, et al. Molecular cloning, expression, and gene localization of a fourth melanocortin receptor. Journal of Biological Chemistry. 1993;268:15174–15179.
-
(1993)
Journal of Biological Chemistry
, vol.268
, pp. 15174-15179
-
-
Gantz, I.1
Miwa, H.2
Konda, Y.3
Shimoto, Y.4
Tashiro, T.5
Watson, S.6
-
4
-
-
0035812694
-
Protein structure prediction and structural genomics
-
[4] Baker D, Sali A. Protein structure prediction and structural genomics. Science. 2001;294:93–96.
-
(2001)
Science
, vol.294
, pp. 93-96
-
-
Baker, D.1
Sali, A.2
-
5
-
-
0347123444
-
Ligand Supported Homology Modeling of G Protein Coupled Receptor Sites: Models Sufficient for Successful Virtual Screening
-
[5] Evers A, Klebe G. Ligand Supported Homology Modeling of G Protein Coupled Receptor Sites: Models Sufficient for Successful Virtual Screening. Angewandte Chemie International Edition. 2004;43:248–251.
-
(2004)
Angewandte Chemie International Edition
, vol.43
, pp. 248-251
-
-
Evers, A.1
Klebe, G.2
-
6
-
-
0028909714
-
Receptors and G proteins as primary components of transmembrane signal transduction
-
[6] Gudermann T, Nürnberg B, Schultz G. Receptors and G proteins as primary components of transmembrane signal transduction. Journal of molecular medicine. 1995;73:51–63.
-
(1995)
Journal of Molecular Medicine
, vol.73
, pp. 51-63
-
-
Gudermann, T.1
Nürnberg, B.2
Schultz, G.3
-
7
-
-
44349091007
-
Using multiple templates to improve quality of homology models in automated homology modeling
-
[7] Larsson P, Wallner B, Lindahl E, Elofsson A. Using multiple templates to improve quality of homology models in automated homology modeling. Protein Science. 2008;17:990–1002.
-
(2008)
Protein Science
, vol.17
, pp. 990-1002
-
-
Larsson, P.1
Wallner, B.2
Lindahl, E.3
Elofsson, A.4
-
8
-
-
23944512136
-
Interactions of human melanocortin 4 receptor with nonpeptide and peptide agonists
-
[8] Pogozheva ID, Chai B-X, Lomize AL, Fong TM, Weinberg DH, Nargund RP, et al. Interactions of human melanocortin 4 receptor with nonpeptide and peptide agonists. Biochemistry. 2005;44:11329–11341.
-
(2005)
Biochemistry
, vol.44
, pp. 11329-11341
-
-
Pogozheva, I.D.1
Chai, B.-X.2
Lomize, A.L.3
Fong, T.M.4
Weinberg, D.H.5
Nargund, R.P.6
-
9
-
-
0043122944
-
ExPASy: The proteomics server for in depth protein knowledge and analysis
-
[9] Gasteiger E, Gattiker A, Hoogland C, Ivanyi I, Appel RD, Bairoch A. ExPASy: the proteomics server for in depth protein knowledge and analysis. Nucleic acids research. 2003;31:3784–3788.
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 3784-3788
-
-
Gasteiger, E.1
Gattiker, A.2
Hoogland, C.3
Ivanyi, I.4
Appel, R.D.5
Bairoch, A.6
-
10
-
-
0031864543
-
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998
-
[10] Bairoch A, Apweiler R. The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998. Nucleic Acids Research. 1998;26:38–42.
-
(1998)
Nucleic Acids Research
, vol.26
, pp. 38-42
-
-
Bairoch, A.1
Apweiler, R.2
-
11
-
-
51349134973
-
Refining homology models by combining replica exchange molecular dynamics and statistical potentials
-
[11] Zhu J, Fan H, Periole X, Honig B, Mark AE. Refining homology models by combining replica exchange molecular dynamics and statistical potentials. Proteins: Structure, Function, and Bioinformatics. 2008;72:1171–1188.
-
(2008)
Proteins: Structure, Function, and Bioinformatics
, vol.72
, pp. 1171-1188
-
-
Zhu, J.1
Fan, H.2
Periole, X.3
Honig, B.4
Mark, A.E.5
-
12
-
-
79959564813
-
Agonist-bound adenosine A2A receptor structures reveal common features of GPCR activation
-
[12] Lebon G, Warne T, Edwards PC, Bennett K, Langmead CJ, Leslie AG, et al. Agonist-bound adenosine A2A receptor structures reveal common features of GPCR activation. Nature. 2011;474:521–525.
-
(2011)
Nature
, vol.474
, pp. 521-525
-
-
Lebon, G.1
Warne, T.2
Edwards, P.C.3
Bennett, K.4
Langmead, C.J.5
Leslie, A.G.6
-
14
-
-
0035748996
-
Comparison of performance in successive CASP experiments. Proteins
-
[14] Venclovas Č, Zemla A, Fidelis K, Moult J. Comparison of performance in successive CASP experiments. Proteins: Structure, Function, and Bioinformatics. 2001;45:163–170.
-
(2001)
Structure, Function, and Bioinformatics
, vol.45
, pp. 163-170
-
-
Venclovas, Č.1
Zemla, A.2
Fidelis, K.3
Moult, J.4
-
15
-
-
84863775602
-
Refinement of protein structure homology models via long, all atom molecular dynamics simulations. Proteins: Structure
-
[15] Raval A, Piana S, Eastwood MP, Dror RO, Shaw DE. Refinement of protein structure homology models via long, all atom molecular dynamics simulations. Proteins: Structure, Function, and Bioinformatics. 2012;80:2071–2079.
-
(2012)
Function, and Bioinformatics
, vol.80
, pp. 2071-2079
-
-
Raval, A.1
Piana, S.2
Eastwood, M.P.3
Dror, R.O.4
Shaw, D.E.5
-
16
-
-
0347994106
-
Refinement of homology based protein structures by molecular dynamics simulation techniques
-
[16] Fan H, Mark AE. Refinement of homology based protein structures by molecular dynamics simulation techniques. Protein Science. 2004;13:211–220.
-
(2004)
Protein Science
, vol.13
, pp. 211-220
-
-
Fan, H.1
Mark, A.E.2
-
17
-
-
33745178449
-
Ligand-based homology modeling as attractive tool to inspect GPCR structural plasticity
-
[17] Moro S, Deflorian F, Bacilieri M, Spalluto G. Ligand-based homology modeling as attractive tool to inspect GPCR structural plasticity. Current pharmaceutical design. 2006;12:2175–185.
-
(2006)
Current Pharmaceutical Design
, vol.12
, pp. 2175-2185
-
-
Moro, S.1
Deflorian, F.2
Bacilieri, M.3
Spalluto, G.4
-
18
-
-
13944255377
-
Structure-based drug discovery using GPCR homology modeling: Successful virtual screening for antagonists of the alpha1A adrenergic receptor
-
[18] Evers A, Klabunde T. Structure-based drug discovery using GPCR homology modeling: successful virtual screening for antagonists of the alpha1A adrenergic receptor. Journal of medicinal chemistry. 2005;48:1088–1097.
-
(2005)
Journal of Medicinal Chemistry
, vol.48
, pp. 1088-1097
-
-
Evers, A.1
Klabunde, T.2
-
19
-
-
78651481923
-
Homology modeling of human CCR5 and analysis of its binding properties through molecular docking and molecular dynamics simulation
-
[19] Shahlaei M, Madadkar-Sobhani A, Mahnam K, Fassihi A, Saghaie L, Mansourian M. Homology modeling of human CCR5 and analysis of its binding properties through molecular docking and molecular dynamics simulation. Biochimica et Biophysica Acta (BBA)-Biomembranes. 2011;1808:802–817.
-
(2011)
Biochimica Et Biophysica Acta (Bba)-Biomembranes
, vol.1808
, pp. 802-817
-
-
Shahlaei, M.1
Madadkar-Sobhani, A.2
Mahnam, K.3
Fassihi, A.4
Saghaie, L.5
Mansourian, M.6
-
20
-
-
80054894634
-
Exploring a model of a chemokine receptor/ligand complex in an explicit membrane environment by molecular dynamics simulation: The human CCR1 receptor
-
[20] Shahlaei M, Madadkar-Sobhani A, Fassihi A, Saghaie L. Exploring a model of a chemokine receptor/ligand complex in an explicit membrane environment by molecular dynamics simulation: the human CCR1 receptor. Journal of chemical information and modeling. 2011;51:2717–2730.
-
(2011)
Journal of Chemical Information and Modeling
, vol.51
, pp. 2717-2730
-
-
Shahlaei, M.1
Madadkar-Sobhani, A.2
Fassihi, A.3
Saghaie, L.4
-
21
-
-
84885836131
-
Molecular Dynamics Simulation of Chemokine Receptors in Lipid Bilayer: A Case Study on C–C Chemokine Receptor Type 2
-
[21] Shahlaei M, Fassihi A, Papaleo E, Pourfarzam M. Molecular Dynamics Simulation of Chemokine Receptors in Lipid Bilayer: A Case Study on C–C Chemokine Receptor Type 2. Chemical biology and drug design. 2013;82:534–545.
-
(2013)
Chemical Biology and Drug Design
, vol.82
, pp. 534-545
-
-
Shahlaei, M.1
Fassihi, A.2
Papaleo, E.3
Pourfarzam, M.4
-
22
-
-
0034091671
-
Protein-induced membrane disorder: A molecular dynamics study of melittin in a dipalmitoylphosphatidylcholine bilayer
-
[22] Bachar M, Becker OM. Protein-induced membrane disorder: a molecular dynamics study of melittin in a dipalmitoylphosphatidylcholine bilayer. Biophysical journal. 2000;78:1359–1375.
-
(2000)
Biophysical Journal
, vol.78
, pp. 1359-1375
-
-
Bachar, M.1
Becker, O.M.2
-
23
-
-
84866909910
-
Comparative protein modelling by satisfaction of spatial restraints
-
[23] Sali A, Blundell T. Comparative protein modelling by satisfaction of spatial restraints. Prot struct dist anal. 1994;64:86–86.
-
(1994)
Prot Struct Dist Anal
, vol.64
, pp. 86
-
-
Sali, A.1
Blundell, T.2
-
24
-
-
0033810049
-
Modeling of loops in protein structures
-
[24] Fiser A, Do RKG, Šali A. Modeling of loops in protein structures. Protein Science. 2000;9:1753–1773.
-
(2000)
Protein Science
, vol.9
, pp. 1753-1773
-
-
Fiser, A.1
Do, R.2
Šali, A.3
-
25
-
-
0034123344
-
Homology modeling and molecular dynamics simulation studies of an inward rectifier potassium channel
-
[25] Capener CE, Shrivastava IH, Ranatunga KM, Forrest LR, Smith GR, Sansom MS. Homology modeling and molecular dynamics simulation studies of an inward rectifier potassium channel. Biophysical journal. 2000;78:2929–2942.
-
(2000)
Biophysical Journal
, vol.78
, pp. 2929-2942
-
-
Capener, C.E.1
Shrivastava, I.H.2
Ranatunga, K.M.3
Forrest, L.R.4
Smith, G.R.5
Sansom, M.S.6
-
26
-
-
0034859342
-
Molecular Dynamics Simulations of Wild-Type and Mutant Forms of the Mycobacterium tuberculosis MscL Channel
-
[26] Elmore DE, Dougherty DA. Molecular Dynamics Simulations of Wild-Type and Mutant Forms of the Mycobacterium tuberculosis MscL Channel. Biophysical journal. 2001;81:1345–1359.
-
(2001)
Biophysical Journal
, vol.81
, pp. 1345-1359
-
-
Elmore, D.E.1
Dougherty, D.A.2
-
27
-
-
0003544049
-
-
[27] Van Gunsteren WF, Billeter S, Eising A, Hünenberger PH, Krüger P, Mark AE, et al. Biomolecular simulation: The {GROMOS96} manual and user guide. 1996.
-
(1996)
Biomolecular Simulation: The {GROMOS96} Manual and User Guide
-
-
Van Gunsteren, W.F.1
Billeter, S.2
Eising, A.3
Hünenberger, P.H.4
Krüger, P.5
Mark, A.E.6
-
30
-
-
33846823909
-
Particle mesh Ewald: An N log (N) method for Ewald sums in large systems
-
[30] Darden T, York D, Pedersen L. Particle mesh Ewald: An N log (N) method for Ewald sums in large systems. The Journal of chemical physics. 1993;98:10089–10092.
-
(1993)
The Journal of Chemical Physics
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
31
-
-
84885836131
-
Molecular Dynamics Simulation of Chemokine Receptors in Lipid Bilayer: A Case Study on C–C Chemokine Receptor Type 2
-
[31] Shahlaei M, Fassihi A, Papaleo E, Pourfarzam M. Molecular Dynamics Simulation of Chemokine Receptors in Lipid Bilayer: A Case Study on C–C Chemokine Receptor Type 2. Chem Biol Drug Des. 2013:534–545.
-
(2013)
Chem Biol Drug Des
, pp. 534-545
-
-
Shahlaei, M.1
Fassihi, A.2
Papaleo, E.3
Pourfarzam, M.4
-
32
-
-
80054894634
-
Exploring a model of a chemokine receptor/ligand complex in an explicit membrane environment by molecular dynamics simulation: The human CCR1 receptor
-
[32] Shahlaei M, Madadkar-Sobhani A, Fassihi A, Saghaie L. Exploring a model of a chemokine receptor/ligand complex in an explicit membrane environment by molecular dynamics simulation: The human CCR1 receptor. J Chem Inform Model. 2011;51:2717–2730.
-
(2011)
J Chem Inform Model
, vol.51
, pp. 2717-2730
-
-
Shahlaei, M.1
Madadkar-Sobhani, A.2
Fassihi, A.3
Saghaie, L.4
-
33
-
-
78651481923
-
Homology modeling of human CCR5 and analysis of its binding properties through molecular docking and molecular dynamics simulation
-
[33] Shahlaei M, Madadkar-Sobhani A, Mahnam K, Fassihi A, Saghaie L, Mansourian M. Homology modeling of human CCR5 and analysis of its binding properties through molecular docking and molecular dynamics simulation. Biochim Biophys Acta BBABiomembranes. 2011;1808:802–817.
-
(2011)
Biochim Biophys Acta Bbabiomembranes
, vol.1808
, pp. 802-817
-
-
Shahlaei, M.1
Madadkar-Sobhani, A.2
Mahnam, K.3
Fassihi, A.4
Saghaie, L.5
Mansourian, M.6
-
34
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
[34] Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic acids research. 1994;22:4673–4680.
-
(1994)
Nucleic Acids Research
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
35
-
-
0031565726
-
An alphacarbon template for the transmembrane helices in the rhodopsin family of G-protein-coupled receptors
-
[35] Baldwin JM, Schertler GF, Unger VM. An alphacarbon template for the transmembrane helices in the rhodopsin family of G-protein-coupled receptors. Journal of molecular biology. 1997;272:144–164.
-
(1997)
Journal of Molecular Biology
, vol.272
, pp. 144-164
-
-
Baldwin, J.M.1
Schertler, G.F.2
Unger, V.M.3
-
36
-
-
34547566446
-
ProSA-web: Interactive web service for the recognition of errors in threedimensional structures of proteins
-
[36] Wiederstein M, Sippl MJ. ProSA-web: Interactive web service for the recognition of errors in threedimensional structures of proteins. Nucleic acids research. 2007.
-
(2007)
Nucleic Acids Research
-
-
Wiederstein, M.1
Sippl, M.J.2
-
37
-
-
0027180507
-
Verification of protein structures: Patterns of nonbonded atomic interactions
-
[37] Colovos C, Yeates TO. Verification of protein structures: patterns of nonbonded atomic interactions. Protein Science. 1993;2:1511–1519.
-
(1993)
Protein Science
, vol.2
, pp. 1511-1519
-
-
Colovos, C.1
Yeates, T.O.2
|