Protein structure prediction in 2002

Current Opinion in Structural Biology

Volumn 12, Issue 3, 2002, Pages 348-354

  Schonbrun, Jack ^a   Wedemeyer, William J ^a   Baker, David ^a  

^a UNIVERSITY OF WASHINGTON SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALPHA CATENIN; PROTEIN; PROTEIN ERP29; PROTEIN FADR; PROTEIN HI0065; PROTEIN MUTS; PROTEIN PPASE; PROTEIN SP100B; RIBOSOME BINDING FACTOR A; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; MOLECULAR DYNAMICS; MOLECULAR RECOGNITION; PREDICTION; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN STRUCTURE; REVIEW; SEQUENCE HOMOLOGY; CHEMICAL STRUCTURE; PROTEIN CONFORMATION; PROTEIN TERTIARY STRUCTURE; SEQUENCE ANALYSIS;

MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ANALYSIS, PROTEIN;

EID: 0036600950     PISSN: 0959440X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0959-440X(02)00336-6     Document Type: Review

References (26)

1. Critical assessment of methods of protein structure prediction (CASP): Round IV
2. CAFASP2: The second critical assessment of fully automated structure prediction methods
3. LiveBench-2: Large-scale automated evaluation of protein structure prediction servers
4. EVA: Large-scale analysis of secondary structure prediction
5. CASP4 editorial
6. Analysis and assessment of comparative modeling predictions in CASP4
7. Reliability of assessment of protein structure prediction methods
8. Enhancement of protein modeling by human intervention in applying the automatic programs 3D-JIGSAW and 3D-PSSM
9. Comparative modeling of CASP4 target proteins: Combining results of sequence search with three-dimensional structure assessment
10. Long timescale simulations
11. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
12. What is the value added by human intervention in protein structure prediction?
13. Fold recognition from sequence comparisons
14. GenTHREADER: An efficient and reliable protein fold recognition method for genomic sequences
15. Comparison of sequence profiles. Strategies for structural predictions using sequence information
16. Assessment of the CASP4 fold recognition category
17. CASP2 knowledge-based approach to distant homology recognition and fold prediction in CASP4
18. Pcons: A neural-network-based consensus predictor that improves fold recognition
19. CASP2: Report on ab initio predictions
20. Comparison of performance in successive CASP experiments
21. Assessment of novel fold targets in CASP4: Predictions of three-dimensional structures, secondary structures, and interresidue contacts
22. Rosetta in CASP4: Progress in ab initio protein structure prediction
23. Predicting novel protein folds by using FRAGFOLD
24. Ab initio protein structure prediction via a combination of threading, lattice folding, clustering, and structure refinement
25. Progress in predicting inter-residue contacts of proteins with neural networks and correlated mutations
26. MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures