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Volumn 13, Issue , 2014, Pages 217-223

An evidence based strategy for normalization of quantitative PCR data from miRNA expression analysis in forensic organ tissue identification

Author keywords

Endogenous references; micro RNA; Normalization; Organ tissue identification; RT qPCR

Indexed keywords

MICRORNA; MICRORNA 191 5P; MICRORNA 26B 5P; MICRORNA 92A 3P; MICRORNA 93 3P; UNCLASSIFIED DRUG;

EID: 84907533016     PISSN: 18724973     EISSN: 18780326     Source Type: Journal    
DOI: 10.1016/j.fsigen.2014.08.005     Document Type: Article
Times cited : (35)

References (47)
  • 1
    • 0010301471 scopus 로고
    • Über das Verspritzen von Gewebsteilen aus Einschussöffnungen und seine kriminalistische Bedeutung
    • W. Weimann Über das Verspritzen von Gewebsteilen aus Einschussöffnungen und seine kriminalistische Bedeutung Dtsch. Z. Gerichtl. Med. 17 1931 92 105
    • (1931) Dtsch. Z. Gerichtl. Med. , vol.17 , pp. 92-105
    • Weimann, W.1
  • 2
    • 0010343632 scopus 로고
    • Die Untersuchung und Beurteilung von Selbstmörderschusswaffen
    • A. Brüning, and F. Wiethold Die Untersuchung und Beurteilung von Selbstmörderschusswaffen Dtsch. Z. Gerichtl. Med. 23 1934 71 82
    • (1934) Dtsch. Z. Gerichtl. Med. , vol.23 , pp. 71-82
    • Brüning, A.1    Wiethold, F.2
  • 3
    • 0035877068 scopus 로고    scopus 로고
    • Assessment of shooting distance on the basis of bloodstain analysis and histological examinations
    • M. Kleiber, D. Stiller, and P. Wiegand Assessment of shooting distance on the basis of bloodstain analysis and histological examinations Forensic Sci. Int. 119 2001 260 262
    • (2001) Forensic Sci. Int. , vol.119 , pp. 260-262
    • Kleiber, M.1    Stiller, D.2    Wiegand, P.3
  • 4
    • 3042826863 scopus 로고    scopus 로고
    • Identification of human brain from a tissue fragment by detection of neurofilament proteins
    • T. Takata, S. Miyaishi, T. Kitao, and H. Ishizu Identification of human brain from a tissue fragment by detection of neurofilament proteins Forensic Sci. Int. 144 2004 1 6
    • (2004) Forensic Sci. Int. , vol.144 , pp. 1-6
    • Takata, T.1    Miyaishi, S.2    Kitao, T.3    Ishizu, H.4
  • 6
    • 0031010624 scopus 로고    scopus 로고
    • A sandwich enzyme immunoassay for brain S-100 protein and its forensic application
    • Y. Seo, E. Kakizaki, and K. Takahama A sandwich enzyme immunoassay for brain S-100 protein and its forensic application Forensic Sci. Int. 87 1997 145 154
    • (1997) Forensic Sci. Int. , vol.87 , pp. 145-154
    • Seo, Y.1    Kakizaki, E.2    Takahama, K.3
  • 7
    • 0030003073 scopus 로고    scopus 로고
    • Forensic application of organ-specific antigens
    • K. Takahama Forensic application of organ-specific antigens Forensic Sci. Int. 80 1996 63 69
    • (1996) Forensic Sci. Int. , vol.80 , pp. 63-69
    • Takahama, K.1
  • 9
    • 84894257368 scopus 로고    scopus 로고
    • A collaborative European exercise on mRNA-based body fluid/skin typing and interpretation of DNA and RNA results
    • M. van den Berge, A. Carracedo, I. Gomes, E.A. Graham, C. Haas, and B. Hjort A collaborative European exercise on mRNA-based body fluid/skin typing and interpretation of DNA and RNA results Forensic Sci. Int. Genet. 10 2014 40 48
    • (2014) Forensic Sci. Int. Genet. , vol.10 , pp. 40-48
    • Van Den Berge, M.1    Carracedo, A.2    Gomes, I.3    Graham, E.A.4    Haas, C.5    Hjort, B.6
  • 10
    • 78651364974 scopus 로고    scopus 로고
    • MRNA profiling for the identification of blood - Results of a collaborative EDNAP exercise
    • C. Haas, E. Hanson, W. Bar, R. Banemann, A.M. Bento, and A. Berti mRNA profiling for the identification of blood - results of a collaborative EDNAP exercise Forensic Sci. Int. Genet. 5 2011 21 26
    • (2011) Forensic Sci. Int. Genet. , vol.5 , pp. 21-26
    • Haas, C.1    Hanson, E.2    Bar, W.3    Banemann, R.4    Bento, A.M.5    Berti, A.6
  • 11
  • 12
    • 84874669378 scopus 로고    scopus 로고
    • RNA/DNA co-analysis from human saliva and semen stains - Results of a third collaborative EDNAP exercise
    • C. Haas, E. Hanson, M.J. Anjos, R. Banemann, A. Berti, and E. Borges RNA/DNA co-analysis from human saliva and semen stains - results of a third collaborative EDNAP exercise Forensic Sci. Int. Genet. 7 2013 230 239
    • (2013) Forensic Sci. Int. Genet. , vol.7 , pp. 230-239
    • Haas, C.1    Hanson, E.2    Anjos, M.J.3    Banemann, R.4    Berti, A.5    Borges, E.6
  • 14
    • 78649317037 scopus 로고    scopus 로고
    • Micro-RNA - A potential for forensic science?
    • C. Courts, and B. Madea Micro-RNA - a potential for forensic science? Forensic Sci. Int. 203 2010 106 111
    • (2010) Forensic Sci. Int. , vol.203 , pp. 106-111
    • Courts, C.1    Madea, B.2
  • 15
    • 61849181477 scopus 로고    scopus 로고
    • Identification of forensically relevant body fluids using a panel of differentially expressed microRNAs
    • E.K. Hanson, H. Lubenow, and J. Ballantyne Identification of forensically relevant body fluids using a panel of differentially expressed microRNAs Anal. Biochem. 387 2009 303 314
    • (2009) Anal. Biochem. , vol.387 , pp. 303-314
    • Hanson, E.K.1    Lubenow, H.2    Ballantyne, J.3
  • 16
    • 77954563216 scopus 로고    scopus 로고
    • MicroRNA markers for forensic body fluid identification obtained from microarray screening and quantitative RT-PCR confirmation
    • D. Zubakov, A.W. Boersma, Y. Choi, P.F. van Kuijk, E.A. Wiemer, and M. Kayser MicroRNA markers for forensic body fluid identification obtained from microarray screening and quantitative RT-PCR confirmation Int. J. Legal Med. 124 2010 217 226
    • (2010) Int. J. Legal Med. , vol.124 , pp. 217-226
    • Zubakov, D.1    Boersma, A.W.2    Choi, Y.3    Van Kuijk, P.F.4    Wiemer, E.A.5    Kayser, M.6
  • 17
    • 80055116881 scopus 로고    scopus 로고
    • Specific Micro-RNA signatures for the detection of saliva and blood in forensic body-fluid identification
    • C. Courts, and B. Madea Specific Micro-RNA signatures for the detection of saliva and blood in forensic body-fluid identification J. Forensic Sci. 56 2011 1464 1470
    • (2011) J. Forensic Sci. , vol.56 , pp. 1464-1470
    • Courts, C.1    Madea, B.2
  • 18
    • 84880177926 scopus 로고    scopus 로고
    • Simultaneous analysis of micro-RNA and DNA for determining the body fluid origin of DNA profiles
    • D. van der Meer, M.L. Uchimoto, and G. Williams Simultaneous analysis of micro-RNA and DNA for determining the body fluid origin of DNA profiles J. Forensic Sci. 58 2013 967 971
    • (2013) J. Forensic Sci. , vol.58 , pp. 967-971
    • Van Der Meer, D.1    Uchimoto, M.L.2    Williams, G.3
  • 19
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • M.W. Pfaffl A new mathematical model for relative quantification in real-time RT-PCR Nucleic Acids Res. 29 2001 e45
    • (2001) Nucleic Acids Res. , vol.29 , pp. 45
    • Pfaffl, M.W.1
  • 20
    • 0036668567 scopus 로고    scopus 로고
    • Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): Trends and problems
    • S.A. Bustin Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems J. Mol. Endocrinol. 29 2002 23 39
    • (2002) J. Mol. Endocrinol. , vol.29 , pp. 23-39
    • Bustin, S.A.1
  • 21
    • 0036581160 scopus 로고    scopus 로고
    • Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR
    • M.W. Pfaffl, G.W. Horgan, and L. Dempfle Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR Nucleic Acids Res. 30 2002 e36
    • (2002) Nucleic Acids Res. , vol.30 , pp. 36
    • Pfaffl, M.W.1    Horgan, G.W.2    Dempfle, L.3
  • 22
    • 28344434302 scopus 로고    scopus 로고
    • Data analysis andinterpretation
    • S. Bustin, first ed. International University Line La Jolla, CA
    • S. Bustin, and T. Nolan Data analysis andinterpretation S. Bustin, A-Z of Quantitative PCR first ed. 2004 International University Line La Jolla, CA 439 492
    • (2004) A-Z of Quantitative PCR , pp. 439-492
    • Bustin, S.1    Nolan, T.2
  • 23
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-delta delta C(T)) method
    • K.J. Livak, and T.D. Schmittgen Analysis of relative gene expression data using real-time quantitative PCR and the 2(-delta delta C(T)) method Methods 25 2001 402 408
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 24
    • 0035108279 scopus 로고    scopus 로고
    • Validities of mRNA quantification using recombinant RNA and recombinant DNA external calibration curves in real-time RT-PCR
    • M.W. Pfaffl, and M. Hageleit Validities of mRNA quantification using recombinant RNA and recombinant DNA external calibration curves in real-time RT-PCR Biotechnol. Lett. 23 2001 275 282
    • (2001) Biotechnol. Lett. , vol.23 , pp. 275-282
    • Pfaffl, M.W.1    Hageleit, M.2
  • 25
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • RESEARCH0034
    • J. Vandesompele, K. De Preter, F. Pattyn, B. Poppe, N. van Roy, and A. De Paepe Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes Genome Biol. 3 2002 RESEARCH0034
    • (2002) Genome Biol. , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6
  • 26
    • 84899021049 scopus 로고    scopus 로고
    • An evidence based strategy for normalization of quantitative PCR data from miRNA expression analysis in forensically relevant body fluids
    • E. Sauer, B. Madea, and C. Courts An evidence based strategy for normalization of quantitative PCR data from miRNA expression analysis in forensically relevant body fluids Forensic Sci. Int. Genet. 11 2014 174 181
    • (2014) Forensic Sci. Int. Genet. , vol.11 , pp. 174-181
    • Sauer, E.1    Madea, B.2    Courts, C.3
  • 27
    • 64149097786 scopus 로고    scopus 로고
    • The MIQE guidelines: Minimum information for publication of quantitative real-time PCR experiments
    • S.A. Bustin, V. Benes, J.A. Garson, J. Hellemans, J. Huggett, and M. Kubista The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments Clin. Chem. 55 2009 611 622
    • (2009) Clin. Chem. , vol.55 , pp. 611-622
    • Bustin, S.A.1    Benes, V.2    Garson, J.A.3    Hellemans, J.4    Huggett, J.5    Kubista, M.6
  • 30
    • 42449098100 scopus 로고    scopus 로고
    • Normalization of microRNA expression levels in quantitative RT-PCR assays: Identification of suitable reference RNA targets in normal and cancerous human solid tissues
    • H.J. Peltier, and G.J. Latham Normalization of microRNA expression levels in quantitative RT-PCR assays: identification of suitable reference RNA targets in normal and cancerous human solid tissues RNA 14 2008 844 852
    • (2008) RNA , vol.14 , pp. 844-852
    • Peltier, H.J.1    Latham, G.J.2
  • 31
    • 84869493444 scopus 로고    scopus 로고
    • Screening and confirmation of microRNA markers for forensic body fluid identification
    • Z. Wang, J. Zhang, H. Luo, Y. Ye, J. Yan, and Y. Hou Screening and confirmation of microRNA markers for forensic body fluid identification Forensic Sci. Int. Genet. 7 2013 116 123
    • (2013) Forensic Sci. Int. Genet. , vol.7 , pp. 116-123
    • Wang, Z.1    Zhang, J.2    Luo, H.3    Ye, Y.4    Yan, J.5    Hou, Y.6
  • 35
    • 27644482283 scopus 로고    scopus 로고
    • Comprehensive algorithm for quantitative real-time polymerase chain reaction
    • S. Zhao, and R.D. Fernald Comprehensive algorithm for quantitative real-time polymerase chain reaction J. Comput. Biol. 12 2005 1047 1064
    • (2005) J. Comput. Biol. , vol.12 , pp. 1047-1064
    • Zhao, S.1    Fernald, R.D.2
  • 36
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • C.L. Andersen, J.L. Jensen, and T.F. Orntoft Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets Cancer Res. 64 2004 5245 5250
    • (2004) Cancer Res. , vol.64 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 37
    • 1842483281 scopus 로고    scopus 로고
    • Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations
    • M.W. Pfaffl, A. Tichopad, C. Prgomet, and T.P. Neuvians Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - excel-based tool using pair-wise correlations Biotechnol. Lett. 26 2004 509 515
    • (2004) Biotechnol. Lett. , vol.26 , pp. 509-515
    • Pfaffl, M.W.1    Tichopad, A.2    Prgomet, C.3    Neuvians, T.P.4
  • 38
    • 0031878502 scopus 로고    scopus 로고
    • Comparison of the efficiency of Moloney Murine Leukaemia Virus (M-MuLV) reverse transcriptase, RNase H-M-MuLV reverse transcriptase and Avian Myeloblastoma Leukaemia Virus (AMV) reverse transcriptase for the amplification of human immunoglobulin genes
    • L. Wong, H. Pearson, A. Fletcher, C.P. Marquis, and S. Mahler Comparison of the efficiency of Moloney Murine Leukaemia Virus (M-MuLV) reverse transcriptase, RNase H-M-MuLV reverse transcriptase and Avian Myeloblastoma Leukaemia Virus (AMV) reverse transcriptase for the amplification of human immunoglobulin genes Biotechnol. Tech. 12 1998 485 489
    • (1998) Biotechnol. Tech. , vol.12 , pp. 485-489
    • Wong, L.1    Pearson, H.2    Fletcher, A.3    Marquis, C.P.4    Mahler, S.5
  • 39
    • 0032247960 scopus 로고    scopus 로고
    • Quantification of mRNA by polymerase chain reaction (PCR) using an internal standard and a nonradioactive detection method
    • W.H. Karge III, E.J. Schaefer, and J.M. Ordovas Quantification of mRNA by polymerase chain reaction (PCR) using an internal standard and a nonradioactive detection method Methods Mol. Biol. 110 1998 43 61
    • (1998) Methods Mol. Biol. , vol.110 , pp. 43-61
    • Karge, W.H.1    Schaefer, E.J.2    Ordovas, J.M.3
  • 40
    • 0034109932 scopus 로고    scopus 로고
    • Evaluation of RNA isolation methods and reference genes for RT-PCR analyses of rare target RNA
    • C. Mannhalter, D. Koizar, and G. Mitterbauer Evaluation of RNA isolation methods and reference genes for RT-PCR analyses of rare target RNA Clin. Chem. Lab. Med. 38 2000 171 177
    • (2000) Clin. Chem. Lab. Med. , vol.38 , pp. 171-177
    • Mannhalter, C.1    Koizar, D.2    Mitterbauer, G.3
  • 41
    • 0036281211 scopus 로고    scopus 로고
    • Processing of gene expression data generated by quantitative real-time RT-PCR
    • P.Y. Muller, H. Janovjak, A.R. Miserez, and Z. Dobbie Processing of gene expression data generated by quantitative real-time RT-PCR Biotechniques 32 2002 1372 1379
    • (2002) Biotechniques , vol.32 , pp. 1372-1379
    • Muller, P.Y.1    Janovjak, H.2    Miserez, A.R.3    Dobbie, Z.4
  • 42
    • 45449087921 scopus 로고    scopus 로고
    • QBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data
    • J. Hellemans, G. Mortier, P.A. De, F. Speleman, and J. Vandesompele qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data Genome Biol. 8 2007 R19
    • (2007) Genome Biol. , vol.8 , pp. 19
    • Hellemans, J.1    Mortier, G.2    De, P.A.3    Speleman, F.4    Vandesompele, J.5
  • 43
    • 33748095919 scopus 로고    scopus 로고
    • Comparison of relative mRNA quantification models and the impact of RNA integrity in quantitative real-time RT-PCR
    • S. Fleige, V. Walf, S. Huch, C. Prgomet, J. Sehm, and M.W. Pfaffl Comparison of relative mRNA quantification models and the impact of RNA integrity in quantitative real-time RT-PCR Biotechnol. Lett. 28 2006 1601 1613
    • (2006) Biotechnol. Lett. , vol.28 , pp. 1601-1613
    • Fleige, S.1    Walf, V.2    Huch, S.3    Prgomet, C.4    Sehm, J.5    Pfaffl, M.W.6
  • 45
    • 84855348158 scopus 로고    scopus 로고
    • Identification of markers of prostate cancer progression using candidate gene expression
    • S.E. Larkin, S. Holmes, I.A. Cree, T. Walker, V. Basketter, and B. Bickers Identification of markers of prostate cancer progression using candidate gene expression Br. J. Cancer 106 2012 157 165
    • (2012) Br. J. Cancer , vol.106 , pp. 157-165
    • Larkin, S.E.1    Holmes, S.2    Cree, I.A.3    Walker, T.4    Basketter, V.5    Bickers, B.6
  • 46
    • 84872186528 scopus 로고    scopus 로고
    • Evaluation of qPCR curve analysis methods for reliable biomarker discovery: Bias, resolution, precision, and implications
    • J.M. Ruijter, M.W. Pfaffl, S. Zhao, A.N. Spiess, G. Boggy, and J. Blom Evaluation of qPCR curve analysis methods for reliable biomarker discovery: bias, resolution, precision, and implications Methods 59 2013 32 46
    • (2013) Methods , vol.59 , pp. 32-46
    • Ruijter, J.M.1    Pfaffl, M.W.2    Zhao, S.3    Spiess, A.N.4    Boggy, G.5    Blom, J.6
  • 47
    • 84868157972 scopus 로고    scopus 로고
    • Stability of endogenous reference genes in postmortem human brains for normalization of quantitative real-time PCR data: Comprehensive evaluation using geNorm, NormFinder, and BestKeeper
    • Q. Wang, T. Ishikawa, T. Michiue, B.L. Zhu, D.W. Guan, and H. Maeda Stability of endogenous reference genes in postmortem human brains for normalization of quantitative real-time PCR data: comprehensive evaluation using geNorm, NormFinder, and BestKeeper Int. J. Legal Med. 126 2012 943 952
    • (2012) Int. J. Legal Med. , vol.126 , pp. 943-952
    • Wang, Q.1    Ishikawa, T.2    Michiue, T.3    Zhu, B.L.4    Guan, D.W.5    Maeda, H.6


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