메뉴 건너뛰기




Volumn 3, Issue , 2014, Pages e187-

Lentivector integration sites in ependymal cells from a model of metachromatic leukodystrophy: Non-b dna as a new factor influencing integration

Author keywords

[No Author keywords available]

Indexed keywords

CEREBROSIDE SULFATASE; DNA B; GENOMIC DNA; GREEN FLUORESCENT PROTEIN; GUANINE QUADRUPLEX; LENTIVIRUS VECTOR; NON B DNA; RESTRICTION ENDONUCLEASE; SATELLITE DNA; UNCLASSIFIED DRUG; RETROVIRUS VECTOR; SINGLE STRANDED DNA;

EID: 84907316610     PISSN: None     EISSN: 21622531     Source Type: Journal    
DOI: 10.1038/mtna.2014.39     Document Type: Article
Times cited : (10)

References (66)
  • 1
    • 0023640208 scopus 로고
    • Ultrastructural study of neurons in metachromatic leukodystrophy
    • Peng, L and Suzuki, K (1987). Ultrastructural study of neurons in metachromatic leukodystrophy. Clin Neuropathol 6: 224-230.
    • (1987) Clin Neuropathol , vol.6 , pp. 224-230
    • Peng, L.1    Suzuki, K.2
  • 2
    • 33947640501 scopus 로고    scopus 로고
    • Enzyme, cell and gene-based therapies for metachromatic leukodystrophy
    • Sevin, C, Aubourg, P and Cartier, N (2007). Enzyme, cell and gene-based therapies for metachromatic leukodystrophy. J Inherit Metab Dis 30: 175-183.
    • (2007) J Inherit Metab Dis , vol.30 , pp. 175-183
    • Sevin, C.1    Aubourg, P.2    Cartier, N.3
  • 3
    • 29644443722 scopus 로고    scopus 로고
    • Intracerebral adeno-associated virus-mediated gene transfer in rapidly progressive forms of metachromatic leukodystrophy
    • Sevin, C, Benraiss, A, Van Dam, D, Bonnin, D, Nagels, G, Verot, L et al. (2006). Intracerebral adeno-associated virus-mediated gene transfer in rapidly progressive forms of metachromatic leukodystrophy. Hum Mol Genet 15: 53-64.
    • (2006) Hum Mol Genet , vol.15 , pp. 53-64
    • Sevin, C.1    Benraiss, A.2    Van Dam, D.3    Bonnin, D.4    Nagels, G.5    Verot, L.6
  • 4
    • 33847238458 scopus 로고    scopus 로고
    • Partial cure of established disease in an animal model of metachromatic leukodystrophy after intracerebral adeno-associated virus-mediated gene transfer
    • Sevin, C, Verot, L, Benraiss, A, Van Dam, D, Bonnin, D, Nagels, G et al. (2007). Partial cure of established disease in an animal model of metachromatic leukodystrophy after intracerebral adeno-associated virus-mediated gene transfer. Gene Ther 14: 405-414.
    • (2007) Gene Ther , vol.14 , pp. 405-414
    • Sevin, C.1    Verot, L.2    Benraiss, A.3    Van Dam, D.4    Bonnin, D.5    Nagels, G.6
  • 5
    • 0029996147 scopus 로고    scopus 로고
    • In vivo gene delivery and stable transduction of nondividing cells by a lentiviral vector
    • Naldini, L, Blömer, U, Gallay, P, Ory, D, Mulligan, R, Gage, FH et al. (1996). In vivo gene delivery and stable transduction of nondividing cells by a lentiviral vector. Science 272: 263-267.
    • (1996) Science , vol.272 , pp. 263-267
    • Naldini, L.1    Blömer, U.2    Gallay, P.3    Ory, D.4    Mulligan, R.5    Gage, F.H.6
  • 6
    • 11144354757 scopus 로고    scopus 로고
    • Correction of metachromatic leukodystrophy in the mouse model by transplantation of genetically modified hematopoietic stem cells
    • Biffi, A, De Palma, M, Quattrini, A, Del Carro, U, Amadio, S, Visigalli, I et al. (2004). Correction of metachromatic leukodystrophy in the mouse model by transplantation of genetically modified hematopoietic stem cells. J Clin Invest 113: 1118-1129.
    • (2004) J Clin Invest , vol.113 , pp. 1118-1129
    • Biffi, A.1    De Palma, M.2    Quattrini, A.3    Del Carro, U.4    Amadio, S.5    Visigalli, I.6
  • 7
    • 33750597616 scopus 로고    scopus 로고
    • Gene therapy of metachromatic leukodystrophy reverses neurological damage and deficits in mice
    • Biffi, A, Capotondo, A, Fasano, S, del Carro, U, Marchesini, S, Azuma, H et al. (2006). Gene therapy of metachromatic leukodystrophy reverses neurological damage and deficits in mice. J Clin Invest 116: 3070-3082.
    • (2006) J Clin Invest , vol.116 , pp. 3070-3082
    • Biffi, A.1    Capotondo, A.2    Fasano, S.3    Del Carro, U.4    Marchesini, S.5    Azuma, H.6
  • 8
    • 84879873039 scopus 로고    scopus 로고
    • Lentiviral hematopoietic stem cell gene therapy benefits metachromatic leukodystrophy
    • Biffi, A, Montini, E, Lorioli, L, Cesani, M, Fumagalli, F, Plati, T et al. (2013). Lentiviral hematopoietic stem cell gene therapy benefits metachromatic leukodystrophy. Science 341: 1233158.
    • (2013) Science , vol.341 , pp. 1233158
    • Biffi, A.1    Montini, E.2    Lorioli, L.3    Cesani, M.4    Fumagalli, F.5    Plati, T.6
  • 9
    • 17944397758 scopus 로고    scopus 로고
    • Hydrocephalus, situs inversus, chronic sinusitis, and male infertility in dna polymerase lambda-deficient mice: Possible implication for the pathogenesis of immotile cilia syndrome
    • Kobayashi, Y, Watanabe, M, Okada, Y, Sawa, H, Takai, H, Nakanishi, M et al. (2002). Hydrocephalus, situs inversus, chronic sinusitis, and male infertility in DNA polymerase lambda-deficient mice: possible implication for the pathogenesis of immotile cilia syndrome. Mol Cell Biol 22: 2769-2776.
    • (2002) Mol Cell Biol , vol.22 , pp. 2769-2776
    • Kobayashi, Y.1    Watanabe, M.2    Okada, Y.3    Sawa, H.4    Takai, H.5    Nakanishi, M.6
  • 10
    • 0035159015 scopus 로고    scopus 로고
    • Polaris, a protein involved in left-right axis patterning, localizes to basal bodies and cilia
    • Taulman, PD, Haycraft, CJ, Balkovetz, DF and Yoder, BK (2001). Polaris, a protein involved in left-right axis patterning, localizes to basal bodies and cilia. Mol Biol Cell 12: 589-599.
    • (2001) Mol Biol Cell , vol.12 , pp. 589-599
    • Taulman, P.D.1    Haycraft, C.J.2    Balkovetz, D.F.3    Yoder, B.K.4
  • 12
    • 0021929778 scopus 로고
    • Ciliary motility in brain ventricular system and trachea of hamsters
    • Roth, Y, Kimhi, Y, Edery, H, Aharonson, E and Priel, Z (1985). Ciliary motility in brain ventricular system and trachea of hamsters. Brain Res 330: 291-297.
    • (1985) Brain Res , vol.330 , pp. 291-297
    • Roth, Y.1    Kimhi, Y.2    Edery, H.3    Aharonson, E.4    Priel, Z.5
  • 13
    • 41049095852 scopus 로고    scopus 로고
    • Cns-directed gene therapy for lysosomal storage diseases
    • Sands, MS and Haskins, ME (2008). CNS-directed gene therapy for lysosomal storage diseases. Acta Paediatr Suppl 97: 22-27.
    • (2008) Acta Paediatr Suppl , vol.97 , pp. 22-27
    • Sands, M.S.1    Haskins, M.E.2
  • 15
    • 0037448352 scopus 로고    scopus 로고
    • A serious adverse event after successful gene therapy for x-linked severe combined immunodeficiency
    • Hacein-Bey-Abina, S, von Kalle, C, Schmidt, M, Le Deist, F, Wulffraat, N, McIntyre, E et al. (2003). A serious adverse event after successful gene therapy for X-linked severe combined immunodeficiency. N Engl J Med 348: 255-256.
    • (2003) N Engl J Med , vol.348 , pp. 255-256
    • Hacein-Bey-Abina, S.1    Von Kalle, C.2    Schmidt, M.3    Le Deist, F.4    Wulffraat, N.5    McIntyre, E.6
  • 16
    • 33745363486 scopus 로고    scopus 로고
    • Hiv integration site selection: Targeting in macrophages and the effects of different routes of viral entry
    • Barr, SD, Ciuffi, A, Leipzig, J, Shinn, P, Ecker, JR and Bushman, FD (2006). HIV integration site selection: targeting in macrophages and the effects of different routes of viral entry. Mol Ther 14: 218-225.
    • (2006) Mol Ther , vol.14 , pp. 218-225
    • Barr, S.D.1    Ciuffi, A.2    Leipzig, J.3    Shinn, P.4    Ecker, J.R.5    Bushman, F.D.6
  • 17
    • 51349090473 scopus 로고    scopus 로고
    • Insertional oncogenesis in 4 patients after retrovirus-mediated gene therapy of scid-x1
    • Hacein-Bey-Abina, S, Garrigue, A, Wang, GP, Soulier, J, Lim, A, Morillon, E et al. (2008). Insertional oncogenesis in 4 patients after retrovirus-mediated gene therapy of SCID-X1. J Clin Invest 118: 3132-3142.
    • (2008) J Clin Invest , vol.118 , pp. 3132-3142
    • Hacein-Bey-Abina, S.1    Garrigue, A.2    Wang, G.P.3    Soulier, J.4    Lim, A.5    Morillon, E.6
  • 18
    • 44349158394 scopus 로고    scopus 로고
    • Dna bar coding and pyrosequencing to analyze adverse events in therapeutic gene transfer
    • Wang, GP, Garrigue, A, Ciuffi, A, Ronen, K, Leipzig, J, Berry, C et al. (2008). DNA bar coding and pyrosequencing to analyze adverse events in therapeutic gene transfer. Nucleic Acids Res 36: e49.
    • (2008) Nucleic Acids Res , vol.36
    • Wang, G.P.1    Garrigue, A.2    Ciuffi, A.3    Ronen, K.4    Leipzig, J.5    Berry, C.6
  • 19
    • 76249131912 scopus 로고    scopus 로고
    • Genomic instability and myelodysplasia with monosomy 7 consequent to evi1 activation after gene therapy for chronic granulomatous disease
    • Stein, S, Ott, MG, Schultze-Strasser, S, Jauch, A, Burwinkel, B, Kinner, A et al. (2010). Genomic instability and myelodysplasia with monosomy 7 consequent to EVI1 activation after gene therapy for chronic granulomatous disease. Nat Med 16: 198-204.
    • (2010) Nat Med , vol.16 , pp. 198-204
    • Stein, S.1    Ott, M.G.2    Schultze-Strasser, S.3    Jauch, A.4    Burwinkel, B.5    Kinner, A.6
  • 20
    • 0037841763 scopus 로고    scopus 로고
    • Transcription start regions in the human genome are favored targets for mlv integration
    • Wu, X, Li, Y, Crise, B and Burgess, SM (2003). Transcription start regions in the human genome are favored targets for MLV integration. Science 300: 1749-1751.
    • (2003) Science , vol.300 , pp. 1749-1751
    • Wu, X.1    Li, Y.2    Crise, B.3    Burgess, S.M.4
  • 21
    • 34547657665 scopus 로고    scopus 로고
    • Hot spots of retroviral integration in human cd34+ hematopoietic cells
    • Cattoglio, C, Facchini, G, Sartori, D, Antonelli, A, Miccio, A, Cassani, B et al. (2007). Hot spots of retroviral integration in human CD34+ hematopoietic cells. Blood 110: 1770-1778.
    • (2007) Blood , vol.110 , pp. 1770-1778
    • Cattoglio, C.1    Facchini, G.2    Sartori, D.3    Antonelli, A.4    Miccio, A.5    Cassani, B.6
  • 22
    • 77953955389 scopus 로고    scopus 로고
    • Dynamics of gene-modified progenitor cells analyzed by tracking retroviral integration sites in a human scid-x1 gene therapy trial
    • Wang, GP, Berry, CC, Malani, N, Leboulch, P, Fischer, A, Hacein-Bey-Abina, S et al. (2010). Dynamics of gene-modified progenitor cells analyzed by tracking retroviral integration sites in a human SCID-X1 gene therapy trial. Blood 115: 4356-4366.
    • (2010) Blood , vol.115 , pp. 4356-4366
    • Wang, G.P.1    Berry, C.C.2    Malani, N.3    Leboulch, P.4    Fischer, A.5    Hacein-Bey-Abina, S.6
  • 23
    • 79959935594 scopus 로고    scopus 로고
    • Distribution of lentiviral vector integration sites in mice following therapeutic gene transfer to treat â-thalassemia
    • Ronen, K, Negre, O, Roth, S, Colomb, C, Malani, N, Denaro, M et al. (2011). Distribution of lentiviral vector integration sites in mice following therapeutic gene transfer to treat â-thalassemia. Mol Ther 19: 1273-1286.
    • (2011) Mol Ther , vol.19 , pp. 1273-1286
    • Ronen, K.1    Negre, O.2    Roth, S.3    Colomb, C.4    Malani, N.5    Denaro, M.6
  • 25
    • 84873739154 scopus 로고    scopus 로고
    • The transcription factor otx2 regulates choroid plexus development and function
    • Johansson, PA, Irmler, M, Acampora, D, Beckers, J, Simeone, A and Götz, M (2013). The transcription factor Otx2 regulates choroid plexus development and function. Development 140: 1055-1066.
    • (2013) Development , vol.140 , pp. 1055-1066
    • Johansson, P.A.1    Irmler, M.2    Acampora, D.3    Beckers, J.4    Simeone, A.5    Götz, M.6
  • 27
    • 84855282765 scopus 로고    scopus 로고
    • Estimated comparative integration hotspots identify different behaviors of retroviral gene transfer vectors
    • Ambrosi, A, Glad, IK, Pellin, D, Cattoglio, C, Mavilio, F, Di Serio, C et al. (2011). Estimated comparative integration hotspots identify different behaviors of retroviral gene transfer vectors. PLoS Comput Biol 7: e1002292.
    • (2011) PLoS Comput Biol , vol.7
    • Ambrosi, A.1    Glad, I.K.2    Pellin, D.3    Cattoglio, C.4    Mavilio, F.5    Di Serio, C.6
  • 28
    • 33847016906 scopus 로고    scopus 로고
    • Recurrent hiv-1 integration at the bach2 locus in resting cd4+ t cell populations during effective highly active antiretroviral therapy
    • Ikeda, T, Shibata, J, Yoshimura, K, Koito, A and Matsushita, S (2007). Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis 195: 716-725.
    • (2007) J Infect Dis , vol.195 , pp. 716-725
    • Ikeda, T.1    Shibata, J.2    Yoshimura, K.3    Koito, A.4    Matsushita, S.5
  • 29
    • 0037162715 scopus 로고    scopus 로고
    • Hiv-1 integration in the human genome favors active genes and local hotspots
    • Schröder, AR, Shinn, P, Chen, H, Berry, C, Ecker, JR and Bushman, F (2002). HIV-1 integration in the human genome favors active genes and local hotspots. Cell 110: 521-529.
    • (2002) Cell , vol.110 , pp. 521-529
    • Schröder, A.R.1    Shinn, P.2    Chen, H.3    Berry, C.4    Ecker, J.R.5    Bushman, F.6
  • 30
    • 77955136814 scopus 로고    scopus 로고
    • Contrasting gc-content dynamics across 33 mammalian genomes: Relationship with life-history traits and chromosome sizes
    • Romiguier, J, Ranwez, V, Douzery, EJ and Galtier, N (2010). Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes. Genome Res 20: 1001-1009.
    • (2010) Genome Res , vol.20 , pp. 1001-1009
    • Romiguier, J.1    Ranwez, V.2    Douzery, E.J.3    Galtier, N.4
  • 31
    • 33747860882 scopus 로고    scopus 로고
    • Qgrs mapper: A web-based server for predicting g-quadruplexes in nucleotide sequences
    • Kikin, O, D'Antonio, L and Bagga, PS (2006). QGRS Mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences. Nucleic Acids Res 34: W676-W682.
    • (2006) Nucleic Acids Res , vol.34
    • Kikin, O.1    D'Antonio, L.2    Bagga, P.S.3
  • 32
    • 84867744921 scopus 로고    scopus 로고
    • Dna secondary structures: Stability and function of g-quadruplex structures
    • Bochman, ML, Paeschke, K and Zakian, VA (2012). DNA secondary structures: stability and function of G-quadruplex structures. Nat Rev Genet 13: 770-780.
    • (2012) Nat Rev Genet , vol.13 , pp. 770-780
    • Bochman, M.L.1    Paeschke, K.2    Zakian, V.A.3
  • 38
    • 21044451712 scopus 로고    scopus 로고
    • Genome-wide analysis of chromosomal features repressing human immunodeficiency virus transcription
    • Lewinski, MK, Bisgrove, D, Shinn, P, Chen, H, Hoffmann, C, Hannenhalli, S et al. (2005). Genome-wide analysis of chromosomal features repressing human immunodeficiency virus transcription. J Virol 79: 6610-6619.
    • (2005) J Virol , vol.79 , pp. 6610-6619
    • Lewinski, M.K.1    Bisgrove, D.2    Shinn, P.3    Chen, H.4    Hoffmann, C.5    Hannenhalli, S.6
  • 40
    • 30344434648 scopus 로고    scopus 로고
    • Integration site selection by hiv-based vectors in dividing and growth-arrested imr-90 lung fibroblasts
    • Ciuffi, A, Mitchell, RS, Hoffmann, C, Leipzig, J, Shinn, P, Ecker, JR et al. (2006). Integration site selection by HIV-based vectors in dividing and growth-arrested IMR-90 lung fibroblasts. Mol Ther 13: 366-373.
    • (2006) Mol Ther , vol.13 , pp. 366-373
    • Ciuffi, A.1    Mitchell, R.S.2    Hoffmann, C.3    Leipzig, J.4    Shinn, P.5    Ecker, J.R.6
  • 42
    • 0031957564 scopus 로고    scopus 로고
    • Chromosome structure and human immunodeficiency virus type 1 cdna integration: Centromeric alphoid repeats are a disfavored target
    • Carteau, S, Hoffmann, C and Bushman, F (1998). Chromosome structure and human immunodeficiency virus type 1 cDNA integration: centromeric alphoid repeats are a disfavored target. J Virol 72: 4005-4014.
    • (1998) J Virol , vol.72 , pp. 4005-4014
    • Carteau, S.1    Hoffmann, C.2    Bushman, F.3
  • 43
    • 0028148110 scopus 로고
    • Tandemly repeated transgenes of the human minisatellite ms32 (d1s8), with novel mouse gamma satellite integration
    • Allen, MJ, Jeffreys, AJ, Surani, MA, Barton, S, Norris, ML and Collick, A (1994). Tandemly repeated transgenes of the human minisatellite MS32 (D1S8), with novel mouse gamma satellite integration. Nucleic Acids Res 22: 2976-2981.
    • (1994) Nucleic Acids Res , vol.22 , pp. 2976-2981
    • Allen, M.J.1    Jeffreys, A.J.2    Surani, M.A.3    Barton, S.4    Norris, M.L.5    Collick, A.6
  • 45
    • 80054993342 scopus 로고    scopus 로고
    • Spatio-temporal transcriptome of the human brain
    • Kang, HJ, Kawasawa, YI, Cheng, F, Zhu, Y, Xu, X, Li, M et al. (2011). Spatio-temporal transcriptome of the human brain. Nature 478: 483-489.
    • (2011) Nature , vol.478 , pp. 483-489
    • Kang, H.J.1    Kawasawa, Y.I.2    Cheng, F.3    Zhu, Y.4    Xu, X.5    Li, M.6
  • 47
    • 16244386233 scopus 로고    scopus 로고
    • Weak palindromic consensus sequences are a common feature found at the integration target sites of many retroviruses
    • Wu, X, Li, Y, Crise, B, Burgess, SM and Munroe, DJ (2005). Weak palindromic consensus sequences are a common feature found at the integration target sites of many retroviruses. J Virol 79: 5211-5214.
    • (2005) J Virol , vol.79 , pp. 5211-5214
    • Wu, X.1    Li, Y.2    Crise, B.3    Burgess, S.M.4    Munroe, D.J.5
  • 48
    • 0030219760 scopus 로고    scopus 로고
    • Target-sequence preferences of hiv-1 integration complexes in vitro
    • Bor, YC, Miller, MD, Bushman, FD and Orgel, LE (1996). Target-sequence preferences of HIV-1 integration complexes in vitro. Virology 222: 283-288.
    • (1996) Virology , vol.222 , pp. 283-288
    • Bor, Y.C.1    Miller, M.D.2    Bushman, F.D.3    Orgel, L.E.4
  • 49
    • 0028125005 scopus 로고
    • The influence of dna and nucleosome structure on integration events directed by hiv integrase
    • Pruss, D, Reeves, R, Bushman, FD and Wolffe, AP (1994). The influence of DNA and nucleosome structure on integration events directed by HIV integrase. J Biol Chem 269: 25031-25041.
    • (1994) J Biol Chem , vol.269 , pp. 25031-25041
    • Pruss, D.1    Reeves, R.2    Bushman, F.D.3    Wolffe, A.P.4
  • 50
    • 0028302469 scopus 로고
    • Retroviral integration: In vitro host site selection by avian integrase
    • Fitzgerald, ML and Grandgenett, DP (1994). Retroviral integration: in vitro host site selection by avian integrase. J Virol 68: 4314-4321.
    • (1994) J Virol , vol.68 , pp. 4314-4321
    • Fitzgerald, M.L.1    Grandgenett, D.P.2
  • 51
    • 0026567862 scopus 로고
    • Retroviral integration into minichromosomes in vitro
    • Pryciak, PM, Sil, A and Varmus, HE (1992). Retroviral integration into minichromosomes in vitro. EMBO J 11: 291-303.
    • (1992) EMBO J , vol.11 , pp. 291-303
    • Pryciak, P.M.1    Sil, A.2    Varmus, H.E.3
  • 52
    • 33744807443 scopus 로고    scopus 로고
    • Dna structures, repeat expansions and human hereditary disorders
    • Mirkin, SM (2006). DNA structures, repeat expansions and human hereditary disorders. Curr Opin Struct Biol 16: 351-358.
    • (2006) Curr Opin Struct Biol , vol.16 , pp. 351-358
    • Mirkin, S.M.1
  • 53
    • 22244446185 scopus 로고    scopus 로고
    • Advances in mechanisms of genetic instability related to hereditary neurological diseases
    • Wells, RD, Dere, R, Hebert, ML, Napierala, M and Son, LS (2005). Advances in mechanisms of genetic instability related to hereditary neurological diseases. Nucleic Acids Res 33: 3785-3798.
    • (2005) Nucleic Acids Res , vol.33 , pp. 3785-3798
    • Wells, R.D.1    Dere, R.2    Hebert, M.L.3    Napierala, M.4    Son, L.S.5
  • 55
    • 0028087782 scopus 로고
    • The non-b-dna structure of d(ca/tg)n does not differ from that of z-dna
    • Ho, PS (1994). The non-B-DNA structure of d(CA/TG)n does not differ from that of Z-DNA. Proc Natl Acad Sci USA 91: 9549-9553.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 9549-9553
    • Ho, P.S.1
  • 56
    • 0025057566 scopus 로고
    • The z-dna motif d(tg)30 promotes reception of information during gene conversion events while stimulating homologous recombination in human cells in culture
    • Wahls, WP, Wallace, LJ and Moore, PD (1990). The Z-DNA motif d(TG)30 promotes reception of information during gene conversion events while stimulating homologous recombination in human cells in culture. Mol Cell Biol 10: 785-793.
    • (1990) Mol Cell Biol , vol.10 , pp. 785-793
    • Wahls, W.P.1    Wallace, L.J.2    Moore, P.D.3
  • 57
    • 79960207639 scopus 로고    scopus 로고
    • Nuclear protein ledgf/p75 recognizes supercoiled dna by a novel dna-binding domain
    • Tsutsui, KM, Sano, K, Hosoya, O, Miyamoto, T and Tsutsui, K (2011). Nuclear protein LEDGF/p75 recognizes supercoiled DNA by a novel DNA-binding domain. Nucleic Acids Res 39: 5067-5081.
    • (2011) Nucleic Acids Res , vol.39 , pp. 5067-5081
    • Tsutsui, K.M.1    Sano, K.2    Hosoya, O.3    Miyamoto, T.4    Tsutsui, K.5
  • 58
    • 53549094135 scopus 로고    scopus 로고
    • Abundance and length of simple repeats in vertebrate genomes are determined by their structural properties
    • Bacolla, A, Larson, JE, Collins, JR, Li, J, Milosavljevic, A, Stenson, PD et al. (2008). Abundance and length of simple repeats in vertebrate genomes are determined by their structural properties. Genome Res 18: 1545-1553.
    • (2008) Genome Res , vol.18 , pp. 1545-1553
    • Bacolla, A.1    Larson, J.E.2    Collins, J.R.3    Li, J.4    Milosavljevic, A.5    Stenson, P.D.6
  • 59
    • 0028264042 scopus 로고
    • Human immunodeficiency virus integrase directs integration to sites of severe dna distortion within the nucleosome core
    • Pruss, D, Bushman, FD and Wolffe, AP (1994). Human immunodeficiency virus integrase directs integration to sites of severe DNA distortion within the nucleosome core. Proc Natl Acad Sci USA 91: 5913-5917.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 5913-5917
    • Pruss, D.1    Bushman, F.D.2    Wolffe, A.P.3
  • 60
    • 0028074881 scopus 로고
    • Tethering human immunodeficiency virus 1 integrase to a dna site directs integration to nearby sequences
    • Bushman, FD (1994). Tethering human immunodeficiency virus 1 integrase to a DNA site directs integration to nearby sequences. Proc Natl Acad Sci USA 91: 9233-9237.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 9233-9237
    • Bushman, F.D.1
  • 61
    • 0033857614 scopus 로고    scopus 로고
    • Relationship between retroviral dna integration and gene expression
    • Weidhaas, JB, Angelichio, EL, Fenner, S and Coffin, JM (2000). Relationship between retroviral DNA integration and gene expression. J Virol 74: 8382-8389.
    • (2000) J Virol , vol.74 , pp. 8382-8389
    • Weidhaas, J.B.1    Angelichio, E.L.2    Fenner, S.3    Coffin, J.M.4
  • 62
    • 0028874669 scopus 로고
    • In vitro integration of human immunodeficiency virus type 1 cdna into targets containing protein-induced bends
    • Bor, YC, Bushman, FD and Orgel, LE (1995). In vitro integration of human immunodeficiency virus type 1 cDNA into targets containing protein-induced bends. Proc Natl Acad Sci USA 92: 10334-10338.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 10334-10338
    • Bor, Y.C.1    Bushman, F.D.2    Orgel, L.E.3
  • 63
    • 0026696624 scopus 로고
    • Nucleosomes, dna-binding proteins, and dna sequence modulate retroviral integration target site selection
    • Pryciak, PM and Varmus, HE (1992). Nucleosomes, DNA-binding proteins, and DNA sequence modulate retroviral integration target site selection. Cell 69: 769-780.
    • (1992) Cell , vol.69 , pp. 769-780
    • Pryciak, P.M.1    Varmus, H.E.2
  • 64
    • 78651496460 scopus 로고    scopus 로고
    • Identification of hiv integration sites in infected host genomic dna
    • Ciuffi, A and Barr, SD (2011). Identification of HIV integration sites in infected host genomic DNA. Methods 53: 39-46.
    • (2011) Methods , vol.53 , pp. 39-46
    • Ciuffi, A.1    Barr, S.D.2
  • 65
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with bowtie 2
    • Langmead, B and Salzberg, SL (2012). Fast gapped-read alignment with Bowtie 2. Nat Methods 9: 357-359.
    • (2012) Nat Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 66
    • 77951770756 scopus 로고    scopus 로고
    • Bedtools: A flexible suite of utilities for comparing genomic features
    • Quinlan, AR and Hall, IM (2010). BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26: 841-842.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.