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Volumn 9, Issue 9, 2014, Pages

Functional and structural analysis of maize Hsp101 IRES

Author keywords

[No Author keywords available]

Indexed keywords

HEAT SHOCK PROTEIN 110; HEAT SHOCK PROTEIN 90; INITIATION FACTOR 4G; MESSENGER RNA; 5' UNTRANSLATED REGION; HSP101 PROTEIN, PLANT; TRANSCRIPTION FACTOR; VEGETABLE PROTEIN;

EID: 84907212851     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0107459     Document Type: Article
Times cited : (12)

References (50)
  • 1
    • 0035984060 scopus 로고    scopus 로고
    • Maize HSP101 plays important roles in both induced and basal thermotolerance and primary root growth
    • Nieto-Sotelo J, Martinez LM, Ponce G, Cassab GI, Alagon A, et al. (2002) Maize HSP101 plays important roles in both induced and basal thermotolerance and primary root growth. Plant Cell 14: 1621-1633.
    • (2002) Plant Cell , vol.14 , pp. 1621-1633
    • Nieto-Sotelo, J.1    Martinez, L.M.2    Ponce, G.3    Cassab, G.I.4    Alagon, A.5
  • 3
    • 60149091189 scopus 로고    scopus 로고
    • Regulation of translation initiation in eukaryotes: Mechanisms and biological targets
    • Sonenberg N, Hinnebusch AG (2009) Regulation of translation initiation in eukaryotes: mechanisms and biological targets. Cell 136: 731-745.
    • (2009) Cell , vol.136 , pp. 731-745
    • Sonenberg, N.1    Hinnebusch, A.G.2
  • 4
    • 79551554217 scopus 로고    scopus 로고
    • Cellular IRES-mediated translation: The war of ITAFs in pathophysiological states
    • Komar AA, Hatzoglou M (2011) Cellular IRES-mediated translation: the war of ITAFs in pathophysiological states. Cell Cycle 10: 229-240.
    • (2011) Cell Cycle , vol.10 , pp. 229-240
    • Komar, A.A.1    Hatzoglou, M.2
  • 5
    • 78649375395 scopus 로고    scopus 로고
    • Translational regulation of gene expression during conditions of cell stress
    • Spriggs KA, Bushell M, Willis AE (2010) Translational regulation of gene expression during conditions of cell stress. Mol Cell 40: 228-237.
    • (2010) Mol Cell , vol.40 , pp. 228-237
    • Spriggs, K.A.1    Bushell, M.2    Willis, A.E.3
  • 6
    • 37549036329 scopus 로고    scopus 로고
    • Identification of internal ribosome entry segment (IRES)-trans-acting factors for the Myc family of IRESs
    • Cobbold LC, Spriggs KA, Haines SJ, Dobbyn HC, Hayes C, et al. (2008) Identification of internal ribosome entry segment (IRES)-trans-acting factors for the Myc family of IRESs. Mol Cell Biol 28: 40-49.
    • (2008) Mol Cell Biol , vol.28 , pp. 40-49
    • Cobbold, L.C.1    Spriggs, K.A.2    Haines, S.J.3    Dobbyn, H.C.4    Hayes, C.5
  • 7
    • 2342633872 scopus 로고    scopus 로고
    • Cellular internal ribosome entry segments: Structures, trans-acting factors and regulation of gene expression
    • Stoneley M, Willis AE (2004) Cellular internal ribosome entry segments: structures, trans-acting factors and regulation of gene expression. Oncogene 23: 3200-3207.
    • (2004) Oncogene , vol.23 , pp. 3200-3207
    • Stoneley, M.1    Willis, A.E.2
  • 10
    • 42749086185 scopus 로고    scopus 로고
    • The impact of RNA structure on picornavirus IRES activity
    • Martinez-Salas E (2008) The impact of RNA structure on picornavirus IRES activity. Trends Microbiol 16: 230-237.
    • (2008) Trends Microbiol , vol.16 , pp. 230-237
    • Martinez-Salas, E.1
  • 11
    • 84861054595 scopus 로고    scopus 로고
    • Alternative Mechanisms to Initiate Translation in Eukaryotic mRNAs
    • Martinez-Salas E, Pineiro D, Fernandez N (2012) Alternative Mechanisms to Initiate Translation in Eukaryotic mRNAs. Comp Funct Gen 2012: 391546.
    • (2012) Comp Funct Gen , vol.2012 , pp. 391546
    • Martinez-Salas, E.1    Pineiro, D.2    Fernandez, N.3
  • 12
    • 36148972741 scopus 로고    scopus 로고
    • Cap-independent regulation of gene expression in apoptosis
    • Graber TE, Holcik M (2007) Cap-independent regulation of gene expression in apoptosis. Mol BioSystems 3: 825-834.
    • (2007) Mol BioSystems , vol.3 , pp. 825-834
    • Graber, T.E.1    Holcik, M.2
  • 13
    • 42449114149 scopus 로고    scopus 로고
    • New insights into internal ribosome entry site elements relevant for viral gene expression
    • Martinez-Salas E, Pacheco A, Serrano P, Fernandez N (2008) New insights into internal ribosome entry site elements relevant for viral gene expression. J Gen Virol 89: 611-626.
    • (2008) J Gen Virol , vol.89 , pp. 611-626
    • Martinez-Salas, E.1    Pacheco, A.2    Serrano, P.3    Fernandez, N.4
  • 14
    • 0027289282 scopus 로고
    • A single nucleotide substitution in the internal ribosome entry site of foot-and-mouth disease virus leads to enhanced cap-independent translation in vivo
    • Martinez-Salas E, Saiz JC, Davila M, Belsham GJ, Domingo E (1993) A single nucleotide substitution in the internal ribosome entry site of foot-and-mouth disease virus leads to enhanced cap-independent translation in vivo. J Virol 67: 3748-3755.
    • (1993) J Virol , vol.67 , pp. 3748-3755
    • Martinez-Salas, E.1    Saiz, J.C.2    Davila, M.3    Belsham, G.J.4    Domingo, E.5
  • 15
    • 0034618402 scopus 로고    scopus 로고
    • A mutation in the c-myc-IRES leads to enhanced internal ribosome entry in multiple myeloma: A novel mechanism of oncogene de-regulation
    • Chappell SA, LeQuesne JP, Paulin FE, deSchoolmeester ML, Stoneley M, et al. (2000) A mutation in the c-myc-IRES leads to enhanced internal ribosome entry in multiple myeloma: a novel mechanism of oncogene de-regulation. Oncogene 19: 4437-4440.
    • (2000) Oncogene , vol.19 , pp. 4437-4440
    • Chappell, S.A.1    LeQuesne, J.P.2    Paulin, F.E.3    DeSchoolmeester, M.L.4    Stoneley, M.5
  • 16
    • 75149196287 scopus 로고    scopus 로고
    • The mechanism of eukaryotic translation initiation and principles of its regulation
    • Jackson RJ, Hellen CU, Pestova TV (2010) The mechanism of eukaryotic translation initiation and principles of its regulation. Nat Rev Mol Cell Biol 11: 113-127.
    • (2010) Nat Rev Mol Cell Biol , vol.11 , pp. 113-127
    • Jackson, R.J.1    Hellen, C.U.2    Pestova, T.V.3
  • 17
    • 66849089596 scopus 로고    scopus 로고
    • Toward a structural understanding of IRES RNA function
    • Filbin ME, Kieft JS (2009) Toward a structural understanding of IRES RNA function. Curr Opin Struct Biol 19: 267-276.
    • (2009) Curr Opin Struct Biol , vol.19 , pp. 267-276
    • Filbin, M.E.1    Kieft, J.S.2
  • 19
    • 0042808486 scopus 로고    scopus 로고
    • An unusual internal ribosomal entry site of inverted symmetry directs expression of a potato leafroll polerovirus replication-associated protein
    • Jaag HM, Kawchuk L, Rohde W, Fischer R, Emans N, et al. (2003) An unusual internal ribosomal entry site of inverted symmetry directs expression of a potato leafroll polerovirus replication-associated protein. Proc Nat Acad Sci USA 100: 8939-8944.
    • (2003) Proc Nat Acad Sci USA , vol.100 , pp. 8939-8944
    • Jaag, H.M.1    Kawchuk, L.2    Rohde, W.3    Fischer, R.4    Emans, N.5
  • 20
    • 0038757759 scopus 로고    scopus 로고
    • Synergism of the 3′-untranslated region and an internal ribosome entry site differentially enhances the translation of a plant virus coat protein
    • Koh DC, Wong SM, Liu DX (2003) Synergism of the 3′-untranslated region and an internal ribosome entry site differentially enhances the translation of a plant virus coat protein. J Biol Chem 278: 20565-20573.
    • (2003) J Biol Chem , vol.278 , pp. 20565-20573
    • Koh, D.C.1    Wong, S.M.2    Liu, D.X.3
  • 21
    • 22844438327 scopus 로고    scopus 로고
    • Cap-independent translation of tobacco etch virus is conferred by an RNA pseudoknot in the 59-leader
    • Zeenko V, Gallie DR (2005) Cap-independent translation of tobacco etch virus is conferred by an RNA pseudoknot in the 59-leader. J Biol Chem 280: 26813-26824.
    • (2005) J Biol Chem , vol.280 , pp. 26813-26824
    • Zeenko, V.1    Gallie, D.R.2
  • 22
    • 33747346414 scopus 로고    scopus 로고
    • An internal ribosome entry site located upstream of the crucifer-infecting tobamovirus coat protein (CP) gene can be used for CP synthesis in vivo
    • Dorokhov YL, Ivanov PA, Komarova TV, Skulachev MV, Atabekov JG (2006) An internal ribosome entry site located upstream of the crucifer-infecting tobamovirus coat protein (CP) gene can be used for CP synthesis in vivo. J Gen Virol 87: 2693-2697.
    • (2006) J Gen Virol , vol.87 , pp. 2693-2697
    • Dorokhov, Y.L.1    Ivanov, P.A.2    Komarova, T.V.3    Skulachev, M.V.4    Atabekov, J.G.5
  • 23
    • 33846142850 scopus 로고    scopus 로고
    • The RNA2 5′ leader of Blackcurrant reversion virus mediates efficient in vivo translation through an internal ribosomal entry site mechanism
    • Karetnikov A, Lehto K (2007) The RNA2 5′ leader of Blackcurrant reversion virus mediates efficient in vivo translation through an internal ribosomal entry site mechanism. J Gen Virol 88: 286-297.
    • (2007) J Gen Virol , vol.88 , pp. 286-297
    • Karetnikov, A.1    Lehto, K.2
  • 24
    • 79960781283 scopus 로고    scopus 로고
    • An Internal Ribosome Entry Site Directs Translation of the 3′-Gene from Pelargonium Flower Break Virus Genomic RNA: Implications for Infectivity
    • Fernandez-Miragall O, Hernandez C (2011) An Internal Ribosome Entry Site Directs Translation of the 3′-Gene from Pelargonium Flower Break Virus Genomic RNA: Implications for Infectivity. PloS One 6: e22617.
    • (2011) PloS One , vol.6 , pp. e22617
    • Fernandez-Miragall, O.1    Hernandez, C.2
  • 25
    • 46149097141 scopus 로고    scopus 로고
    • The 5′ untranslated region of the maize alcohol dehydrogenase gene contains an internal ribosome entry site
    • Mardanova ES, Zamchuk LA, Skulachev MV, Ravin NV (2008) The 5′ untranslated region of the maize alcohol dehydrogenase gene contains an internal ribosome entry site. Gene 420: 11-16.
    • (2008) Gene , vol.420 , pp. 11-16
    • Mardanova, E.S.1    Zamchuk, L.A.2    Skulachev, M.V.3    Ravin, N.V.4
  • 26
    • 0027941167 scopus 로고
    • Foot-and-mouth disease virus leader proteinase: Purification of the Lb form and determination of its cleavage site on eIF-4 gamma
    • Kirchweger R, Ziegler E, Lamphear BJ, Waters D, Liebig HD, et al. (1994) Foot-and-mouth disease virus leader proteinase: purification of the Lb form and determination of its cleavage site on eIF-4 gamma. J Virol 68: 5677-5684.
    • (1994) J Virol , vol.68 , pp. 5677-5684
    • Kirchweger, R.1    Ziegler, E.2    Lamphear, B.J.3    Waters, D.4    Liebig, H.D.5
  • 27
    • 33947720028 scopus 로고    scopus 로고
    • Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): Quantitative RNA structure analysis at single nucleotide resolution
    • Wilkinson KA, Merino EJ, Weeks KM (2006) Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution. Nat Protoc 1: 1610-1616.
    • (2006) Nat Protoc , vol.1 , pp. 1610-1616
    • Wilkinson, K.A.1    Merino, E.J.2    Weeks, K.M.3
  • 28
    • 78650261546 scopus 로고    scopus 로고
    • Structural analysis provides insights into the modular organization of picornavirus IRES
    • Fernandez N, Garcia-Sacristan A, Ramajo J, Briones C, Martinez-Salas E (2011) Structural analysis provides insights into the modular organization of picornavirus IRES. Virology 409: 251-261.
    • (2011) Virology , vol.409 , pp. 251-261
    • Fernandez, N.1    Garcia-Sacristan, A.2    Ramajo, J.3    Briones, C.4    Martinez-Salas, E.5
  • 29
    • 0141708701 scopus 로고    scopus 로고
    • Natural product origins of Hsp90 inhibitors
    • Uehara Y (2003) Natural product origins of Hsp90 inhibitors. Current Cancer Drug Targets 3: 325-330.
    • (2003) Current Cancer Drug Targets , vol.3 , pp. 325-330
    • Uehara, Y.1
  • 30
    • 82755176170 scopus 로고    scopus 로고
    • Plant cap-binding complexes eukaryotic initiation factors eIF4F and eIFISO4F: Molecular specificity of subunit binding
    • Mayberry LK, Allen ML, Nitka KR, Campbell L, Murphy PA, et al. (2011) Plant cap-binding complexes eukaryotic initiation factors eIF4F and eIFISO4F: molecular specificity of subunit binding. J Biol Chem 286: 42566-42574.
    • (2011) J Biol Chem , vol.286 , pp. 42566-42574
    • Mayberry, L.K.1    Allen, M.L.2    Nitka, K.R.3    Campbell, L.4    Murphy, P.A.5
  • 31
    • 84862293672 scopus 로고    scopus 로고
    • The eIF4F and eIFiso4F Complexes of Plants: An Evolutionary Perspective
    • Patrick RM, Browning KS (2012) The eIF4F and eIFiso4F Complexes of Plants: An Evolutionary Perspective. Comp Funct Gen 2012: 287814.
    • (2012) Comp Funct Gen , vol.2012 , pp. 287814
    • Patrick, R.M.1    Browning, K.S.2
  • 32
    • 0034740797 scopus 로고    scopus 로고
    • The 5′ untranslated region of Rhopalosiphum padi virus contains an internal ribosome entry site which functions efficiently in mammalian, plant, and insect translation systems
    • Woolaway KE, Lazaridis K, Belsham GJ, Carter MJ, Roberts LO (2001) The 5′ untranslated region of Rhopalosiphum padi virus contains an internal ribosome entry site which functions efficiently in mammalian, plant, and insect translation systems. J Virol 75: 10244-10249.
    • (2001) J Virol , vol.75 , pp. 10244-10249
    • Woolaway, K.E.1    Lazaridis, K.2    Belsham, G.J.3    Carter, M.J.4    Roberts, L.O.5
  • 33
  • 34
    • 84934442041 scopus 로고    scopus 로고
    • Identification of plant virus IRES
    • Wong SM, Koh DC, Liu D (2008) Identification of plant virus IRES. Meth Mol Biol 451: 125-133.
    • (2008) Meth Mol Biol , vol.451 , pp. 125-133
    • Wong, S.M.1    Koh, D.C.2    Liu, D.3
  • 36
    • 7044249198 scopus 로고    scopus 로고
    • Internal ribosome entry site drives cap-independent translation of reaper and heat shock protein 70 mRNAs in Drosophila embryos
    • Hernandez G, Vazquez-Pianzola P, Sierra JM, Rivera-Pomar R (2004) Internal ribosome entry site drives cap-independent translation of reaper and heat shock protein 70 mRNAs in Drosophila embryos. RNA 10: 1783-1797.
    • (2004) RNA , vol.10 , pp. 1783-1797
    • Hernandez, G.1    Vazquez-Pianzola, P.2    Sierra, J.M.3    Rivera-Pomar, R.4
  • 38
    • 84893121503 scopus 로고    scopus 로고
    • Using RNA inverse folding to identify IRES-like structural subdomains
    • Dotu I, Lozano G, Clote P, Martinez-Salas E (2013) Using RNA inverse folding to identify IRES-like structural subdomains. RNA Biology 10: 1842-1852.
    • (2013) RNA Biology , vol.10 , pp. 1842-1852
    • Dotu, I.1    Lozano, G.2    Clote, P.3    Martinez-Salas, E.4
  • 39
    • 76549116230 scopus 로고    scopus 로고
    • Strong eukaryotic IRESs have weak secondary structure
    • Xia X, Holcik M (2009) Strong eukaryotic IRESs have weak secondary structure. PloS One 4: e4136.
    • (2009) PloS One , vol.4 , pp. e4136
    • Xia, X.1    Holcik, M.2
  • 40
    • 84893427735 scopus 로고    scopus 로고
    • In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features
    • Ding Y, Tang Y, Kwok CK, Zhang Y, Bevilacqua PC, et al. (2014) In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features. Nature 505: 696-700.
    • (2014) Nature , vol.505 , pp. 696-700
    • Ding, Y.1    Tang, Y.2    Kwok, C.K.3    Zhang, Y.4    Bevilacqua, P.C.5
  • 41
    • 33746660802 scopus 로고    scopus 로고
    • Comparative genomics and evolution of the HSP90 family of genes across all kingdoms of organisms
    • Chen B, Zhong D, Monteiro A (2006) Comparative genomics and evolution of the HSP90 family of genes across all kingdoms of organisms. BMC Genomics 7: 156.
    • (2006) BMC Genomics , vol.7 , pp. 156
    • Chen, B.1    Zhong, D.2    Monteiro, A.3
  • 42
    • 0028785298 scopus 로고
    • Phylogenetic analysis of the 90 kDa heat shock family of protein sequences and an examination of the relationship among animals, plants, and fungi species
    • Gupta RS (1995) Phylogenetic analysis of the 90 kDa heat shock family of protein sequences and an examination of the relationship among animals, plants, and fungi species. Mol Biol Evol 12: 1063-1073.
    • (1995) Mol Biol Evol , vol.12 , pp. 1063-1073
    • Gupta, R.S.1
  • 44
    • 84855612418 scopus 로고    scopus 로고
    • The interaction between human initiation factor eIF3 subunit c and heat-shock protein 90: A necessary factor for translation mediated by the hepatitis C virus internal ribosome entry site
    • Ujino S, Nishitsuji H, Sugiyama R, Suzuki H, Hishiki T, et al. (2012) The interaction between human initiation factor eIF3 subunit c and heat-shock protein 90: a necessary factor for translation mediated by the hepatitis C virus internal ribosome entry site. Virus Res 163: 390-395.
    • (2012) Virus Res , vol.163 , pp. 390-395
    • Ujino, S.1    Nishitsuji, H.2    Sugiyama, R.3    Suzuki, H.4    Hishiki, T.5
  • 45
    • 77956648782 scopus 로고    scopus 로고
    • Deletion of the eIFiso4G subunit of the Arabidopsis eIFiso4F translation initiation complex impairs health and viability
    • Lellis AD, Allen ML, Aertker AW, Tran JK, Hillis DM, et al. (2010) Deletion of the eIFiso4G subunit of the Arabidopsis eIFiso4F translation initiation complex impairs health and viability. Plant Mol Biol 74: 249-263.
    • (2010) Plant Mol Biol , vol.74 , pp. 249-263
    • Lellis, A.D.1    Allen, M.L.2    Aertker, A.W.3    Tran, J.K.4    Hillis, D.M.5
  • 46
    • 0032541157 scopus 로고    scopus 로고
    • Translation eukaryotic initiation factor 4G recognizes a specific structural element within the internal ribosome entry site of encephalomyocarditis virus RNA
    • Kolupaeva VG, Pestova TV, Hellen CU, Shatsky IN (1998) Translation eukaryotic initiation factor 4G recognizes a specific structural element within the internal ribosome entry site of encephalomyocarditis virus RNA. J Biol Chem 273: 18599-18604.
    • (1998) J Biol Chem , vol.273 , pp. 18599-18604
    • Kolupaeva, V.G.1    Pestova, T.V.2    Hellen, C.U.3    Shatsky, I.N.4
  • 47
    • 0033623486 scopus 로고    scopus 로고
    • Interaction of the eIF4G initiation factor with the aphthovirus IRES is essential for internal translation initiation in vivo
    • Lopez de Quinto S, Martinez-Salas E (2000) Interaction of the eIF4G initiation factor with the aphthovirus IRES is essential for internal translation initiation in vivo. RNA 6: 1380-1392.
    • (2000) RNA , vol.6 , pp. 1380-1392
    • Lopez De Quinto, S.1    Martinez-Salas, E.2
  • 48
    • 62849124523 scopus 로고    scopus 로고
    • Canonical initiation factor requirements of the Myc family of internal ribosome entry segments
    • Spriggs KA, Cobbold LC, Jopling CL, Cooper RE, Wilson LA, et al. (2009) Canonical initiation factor requirements of the Myc family of internal ribosome entry segments. Mol Cell Biol 29: 1565-1574.
    • (2009) Mol Cell Biol , vol.29 , pp. 1565-1574
    • Spriggs, K.A.1    Cobbold, L.C.2    Jopling, C.L.3    Cooper, R.E.4    Wilson, L.A.5
  • 49
    • 0035813149 scopus 로고    scopus 로고
    • eIF4G functionally differs from eIFiso4G in promoting internal initiation, cap-independent translation, and translation of structured mRNAs
    • Gallie DR, Browning KS (2001) eIF4G functionally differs from eIFiso4G in promoting internal initiation, cap-independent translation, and translation of structured mRNAs. J Biol Chem. 276: 36951-36960.
    • (2001) J Biol Chem. , vol.276 , pp. 36951-36960
    • Gallie, D.R.1    Browning, K.S.2
  • 50
    • 80455168337 scopus 로고    scopus 로고
    • Structural basis for the biological relevance of the invariant apical stem in IRES-mediated translation
    • Fernandez N, Fernandez-Miragall O, Ramajo J, Garcia-Sacristan A, Bellora N, et al. (2011) Structural basis for the biological relevance of the invariant apical stem in IRES-mediated translation. Nucleic Acids Res 39: 8572-8585.
    • (2011) Nucleic Acids Res , vol.39 , pp. 8572-8585
    • Fernandez, N.1    Fernandez-Miragall, O.2    Ramajo, J.3    Garcia-Sacristan, A.4    Bellora, N.5


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