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Volumn 111, Issue 38, 2014, Pages 13858-13863

Single-molecule correlated chemical probing of RNA

Author keywords

Dimethyl sulfate; Motif discovery; Spectral clustering; Structure refinement

Indexed keywords

BACTERIAL RNA; PROTOZOAL RNA;

EID: 84907190326     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1407306111     Document Type: Article
Times cited : (129)

References (18)
  • 1
    • 60149103676 scopus 로고    scopus 로고
    • The centrality of RNA
    • Sharp PA (2009) The centrality of RNA. Cell 136(4):577-580.
    • (2009) Cell , vol.136 , Issue.4 , pp. 577-580
    • Sharp, P.A.1
  • 2
    • 33744807172 scopus 로고    scopus 로고
    • The building blocks and motifs of RNA architecture
    • Leontis NB, Lescoute A, Westhof E. (2006) The building blocks and motifs of RNA architecture. Curr Opin Struct Biol 16(3):279-287.
    • (2006) Curr Opin Struct Biol , vol.16 , Issue.3 , pp. 279-287
    • Leontis, N.B.1    Lescoute, A.2    Westhof, E.3
  • 3
    • 48249104039 scopus 로고    scopus 로고
    • Riboswitches: Emerging themes in RNA structure and function
    • Montange RK, Batey R.T. (2008) Riboswitches: Emerging themes in RNA structure and function. Annu Rev Biophys 37:117-133.
    • (2008) Annu Rev Biophys , vol.37 , pp. 117-133
    • Montange, R.K.1    Batey, R.T.2
  • 4
    • 84857080591 scopus 로고    scopus 로고
    • Functional complexity and regulation through RNA dynamics
    • Dethoff EA, Chugh J, Mustoe A.M., Al-Hashimi HM (2012) Functional complexity and regulation through RNA dynamics. Nature 482 (7385):322-330.
    • (2012) Nature , vol.482 , Issue.7385 , pp. 322-330
    • Dethoff, E.A.1    Chugh, J.2    Mustoe, A.M.3    Al-Hashimi, H.M.4
  • 5
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • Shendure J, Ji H. (2008) Next-generation DNA sequencing. Nat Biotechnol 26(10): 1135-1145.
    • (2008) Nat Biotechnol , vol.26 , Issue.10 , pp. 1135-1145
    • Shendure, J.1    Ji, H.2
  • 7
    • 33745635350 scopus 로고    scopus 로고
    • Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch
    • Serganov A, Polonskaia A, Phan A.T., Breaker RR, Patel D.J. (2006) Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch. Nature 441 (7097):1167-1171.
    • (2006) Nature , vol.441 , Issue.7097 , pp. 1167-1171
    • Serganov, A.1    Polonskaia, A.2    Phan, A.T.3    Breaker, R.R.4    Patel, D.J.5
  • 8
    • 0029820625 scopus 로고    scopus 로고
    • Crystal structure of a group I ribozyme domain: Principles of RNA packing
    • Cate JH, et al (1996) Crystal structure of a group I ribozyme domain: Principles of RNA packing. Science 273 (5282):1678-1685.
    • (1996) Science , vol.273 , Issue.5282 , pp. 1678-1685
    • Cate, J.H.1
  • 9
    • 58249114463 scopus 로고    scopus 로고
    • Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA
    • Kazantsev AV, Krivenko AA, Pace N.R. (2009) Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA. RNA 15(2):266-276.
    • (2009) RNA , vol.15 , Issue.2 , pp. 266-276
    • Kazantsev, A.V.1    Krivenko, A.A.2    Pace, N.R.3
  • 10
    • 0028301674 scopus 로고
    • GAAA tetraloop and conserved bulge stabilize tertiary structure of a group I intron domain
    • Murphy FL, Cech T.R. (1994) GAAA tetraloop and conserved bulge stabilize tertiary structure of a group I intron domain. J Mol Biol 236(1):49-63.
    • (1994) J Mol Biol , vol.236 , Issue.1 , pp. 49-63
    • Murphy, F.L.1    Cech, T.R.2
  • 11
    • 0030761966 scopus 로고    scopus 로고
    • An RNA internal loop acts as a hinge to facilitate ri-bozyme folding and catalysis
    • Szewczak AA, Cech T.R. (1997) An RNA internal loop acts as a hinge to facilitate ri-bozyme folding and catalysis. RNA 3(8):838-849.
    • (1997) RNA , vol.3 , Issue.8 , pp. 838-849
    • Szewczak, A.A.1    Cech, T.R.2
  • 12
    • 75649088957 scopus 로고    scopus 로고
    • Thermodynamic analysis of ligand binding and ligand binding-induced tertiary structure formation by the thiamine pyrophosphate riboswitch
    • Kulshina N, Edwards TE, Ferré-D'Amaré AR (2010) Thermodynamic analysis of ligand binding and ligand binding-induced tertiary structure formation by the thiamine pyrophosphate riboswitch. RNA 16(1):186-196.
    • (2010) RNA , vol.16 , Issue.1 , pp. 186-196
    • Kulshina, N.1    Edwards, T.E.2    Ferré-D'Amaré, A.R.3
  • 13
    • 84255189090 scopus 로고    scopus 로고
    • The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks
    • Butcher SE, Pyle A.M. (2011) The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks. Acc Chem Res 44(12):1302-1311.
    • (2011) Acc Chem Res , vol.44 , Issue.12 , pp. 1302-1311
    • Butcher, S.E.1    Pyle, A.M.2
  • 15
    • 67849127180 scopus 로고    scopus 로고
    • Native-like RNA tertiary structures using a sequence-encoded cleavage agent and refinement by discrete molecular dynamics
    • Gherghe CM, Leonard CW, Ding F, Dokholyan N.V., Weeks K.M. (2009) Native-like RNA tertiary structures using a sequence-encoded cleavage agent and refinement by discrete molecular dynamics. J Am Chem Soc 131(7):2541-2546.
    • (2009) J Am Chem Soc , vol.131 , Issue.7 , pp. 2541-2546
    • Gherghe, C.M.1    Leonard, C.W.2    Ding, F.3    Dokholyan, N.V.4    Weeks, K.M.5
  • 16
    • 77953669481 scopus 로고    scopus 로고
    • Robust and generic RNA modeling using inferred constraints: A structure for the hepatitis C virus IRES pseu-doknot domain
    • Lavender CA, Ding F, Dokholyan N.V., Weeks K.M. (2010) Robust and generic RNA modeling using inferred constraints: A structure for the hepatitis C virus IRES pseu-doknot domain. Biochemistry 49(24):4931-4933.
    • (2010) Biochemistry , vol.49 , Issue.24 , pp. 4931-4933
    • Lavender, C.A.1    Ding, F.2    Dokholyan, N.V.3    Weeks, K.M.4
  • 17
    • 44149101971 scopus 로고    scopus 로고
    • Ab initio RNA folding by discrete molecular dynamics: From structure prediction to folding mechanisms
    • Ding F, et al (2008) Ab initio RNA folding by discrete molecular dynamics: From structure prediction to folding mechanisms. RNA 14(6):1164-1173.
    • (2008) RNA , vol.14 , Issue.6 , pp. 1164-1173
    • Ding, F.1
  • 18
    • 77953648210 scopus 로고    scopus 로고
    • On the significance of an RNA tertiary structure prediction
    • Hajdin CE, Ding F, Dokholyan N.V., Weeks K.M. (2010) On the significance of an RNA tertiary structure prediction. RNA 16(7):1340-1349.
    • (2010) RNA , vol.16 , Issue.7 , pp. 1340-1349
    • Hajdin, C.E.1    Ding, F.2    Dokholyan, N.V.3    Weeks, K.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.