-
1
-
-
60149103676
-
The centrality of RNA
-
Sharp PA (2009) The centrality of RNA. Cell 136(4):577-580.
-
(2009)
Cell
, vol.136
, Issue.4
, pp. 577-580
-
-
Sharp, P.A.1
-
3
-
-
48249104039
-
Riboswitches: Emerging themes in RNA structure and function
-
Montange RK, Batey R.T. (2008) Riboswitches: Emerging themes in RNA structure and function. Annu Rev Biophys 37:117-133.
-
(2008)
Annu Rev Biophys
, vol.37
, pp. 117-133
-
-
Montange, R.K.1
Batey, R.T.2
-
4
-
-
84857080591
-
Functional complexity and regulation through RNA dynamics
-
Dethoff EA, Chugh J, Mustoe A.M., Al-Hashimi HM (2012) Functional complexity and regulation through RNA dynamics. Nature 482 (7385):322-330.
-
(2012)
Nature
, vol.482
, Issue.7385
, pp. 322-330
-
-
Dethoff, E.A.1
Chugh, J.2
Mustoe, A.M.3
Al-Hashimi, H.M.4
-
5
-
-
53649106195
-
Next-generation DNA sequencing
-
Shendure J, Ji H. (2008) Next-generation DNA sequencing. Nat Biotechnol 26(10): 1135-1145.
-
(2008)
Nat Biotechnol
, vol.26
, Issue.10
, pp. 1135-1145
-
-
Shendure, J.1
Ji, H.2
-
6
-
-
85027926010
-
RNA motif discovery by SHAPE and mutational profiling (SHAPE-map)
-
Siegfried NA, Busan S, Rice G.M., Nelson JAE, Weeks K.M. (2014) RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP). Nat Methods 11:959-965.
-
(2014)
Nat Methods
, vol.11
, pp. 959-965
-
-
Siegfried, N.A.1
Busan, S.2
Rice, G.M.3
Nelson, J.A.E.4
Weeks, K.M.5
-
7
-
-
33745635350
-
Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch
-
Serganov A, Polonskaia A, Phan A.T., Breaker RR, Patel D.J. (2006) Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch. Nature 441 (7097):1167-1171.
-
(2006)
Nature
, vol.441
, Issue.7097
, pp. 1167-1171
-
-
Serganov, A.1
Polonskaia, A.2
Phan, A.T.3
Breaker, R.R.4
Patel, D.J.5
-
8
-
-
0029820625
-
Crystal structure of a group I ribozyme domain: Principles of RNA packing
-
Cate JH, et al (1996) Crystal structure of a group I ribozyme domain: Principles of RNA packing. Science 273 (5282):1678-1685.
-
(1996)
Science
, vol.273
, Issue.5282
, pp. 1678-1685
-
-
Cate, J.H.1
-
9
-
-
58249114463
-
Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA
-
Kazantsev AV, Krivenko AA, Pace N.R. (2009) Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA. RNA 15(2):266-276.
-
(2009)
RNA
, vol.15
, Issue.2
, pp. 266-276
-
-
Kazantsev, A.V.1
Krivenko, A.A.2
Pace, N.R.3
-
10
-
-
0028301674
-
GAAA tetraloop and conserved bulge stabilize tertiary structure of a group I intron domain
-
Murphy FL, Cech T.R. (1994) GAAA tetraloop and conserved bulge stabilize tertiary structure of a group I intron domain. J Mol Biol 236(1):49-63.
-
(1994)
J Mol Biol
, vol.236
, Issue.1
, pp. 49-63
-
-
Murphy, F.L.1
Cech, T.R.2
-
11
-
-
0030761966
-
An RNA internal loop acts as a hinge to facilitate ri-bozyme folding and catalysis
-
Szewczak AA, Cech T.R. (1997) An RNA internal loop acts as a hinge to facilitate ri-bozyme folding and catalysis. RNA 3(8):838-849.
-
(1997)
RNA
, vol.3
, Issue.8
, pp. 838-849
-
-
Szewczak, A.A.1
Cech, T.R.2
-
12
-
-
75649088957
-
Thermodynamic analysis of ligand binding and ligand binding-induced tertiary structure formation by the thiamine pyrophosphate riboswitch
-
Kulshina N, Edwards TE, Ferré-D'Amaré AR (2010) Thermodynamic analysis of ligand binding and ligand binding-induced tertiary structure formation by the thiamine pyrophosphate riboswitch. RNA 16(1):186-196.
-
(2010)
RNA
, vol.16
, Issue.1
, pp. 186-196
-
-
Kulshina, N.1
Edwards, T.E.2
Ferré-D'Amaré, A.R.3
-
13
-
-
84255189090
-
The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks
-
Butcher SE, Pyle A.M. (2011) The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks. Acc Chem Res 44(12):1302-1311.
-
(2011)
Acc Chem Res
, vol.44
, Issue.12
, pp. 1302-1311
-
-
Butcher, S.E.1
Pyle, A.M.2
-
15
-
-
67849127180
-
Native-like RNA tertiary structures using a sequence-encoded cleavage agent and refinement by discrete molecular dynamics
-
Gherghe CM, Leonard CW, Ding F, Dokholyan N.V., Weeks K.M. (2009) Native-like RNA tertiary structures using a sequence-encoded cleavage agent and refinement by discrete molecular dynamics. J Am Chem Soc 131(7):2541-2546.
-
(2009)
J Am Chem Soc
, vol.131
, Issue.7
, pp. 2541-2546
-
-
Gherghe, C.M.1
Leonard, C.W.2
Ding, F.3
Dokholyan, N.V.4
Weeks, K.M.5
-
16
-
-
77953669481
-
Robust and generic RNA modeling using inferred constraints: A structure for the hepatitis C virus IRES pseu-doknot domain
-
Lavender CA, Ding F, Dokholyan N.V., Weeks K.M. (2010) Robust and generic RNA modeling using inferred constraints: A structure for the hepatitis C virus IRES pseu-doknot domain. Biochemistry 49(24):4931-4933.
-
(2010)
Biochemistry
, vol.49
, Issue.24
, pp. 4931-4933
-
-
Lavender, C.A.1
Ding, F.2
Dokholyan, N.V.3
Weeks, K.M.4
-
17
-
-
44149101971
-
Ab initio RNA folding by discrete molecular dynamics: From structure prediction to folding mechanisms
-
Ding F, et al (2008) Ab initio RNA folding by discrete molecular dynamics: From structure prediction to folding mechanisms. RNA 14(6):1164-1173.
-
(2008)
RNA
, vol.14
, Issue.6
, pp. 1164-1173
-
-
Ding, F.1
-
18
-
-
77953648210
-
On the significance of an RNA tertiary structure prediction
-
Hajdin CE, Ding F, Dokholyan N.V., Weeks K.M. (2010) On the significance of an RNA tertiary structure prediction. RNA 16(7):1340-1349.
-
(2010)
RNA
, vol.16
, Issue.7
, pp. 1340-1349
-
-
Hajdin, C.E.1
Ding, F.2
Dokholyan, N.V.3
Weeks, K.M.4
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