메뉴 건너뛰기




Volumn 196, Issue 20, 2014, Pages 3589-3597

Mutational analysis of the mycobacteriophage BPs promoter PR reveals context-dependent sequences for mycobacterial gene expression

Author keywords

[No Author keywords available]

Indexed keywords

CHAPERONIN 60; BACTERIAL DNA; SPACER DNA;

EID: 84907097044     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.01801-14     Document Type: Article
Times cited : (14)

References (48)
  • 1
    • 0002919912 scopus 로고    scopus 로고
    • Determinants of mycobacterial gene expression
    • In Hatfull GF, Jacobs WR, Jr (ed), ASM Press, Washington, DC
    • Gomez M, Smith I. 2000. Determinants of mycobacterial gene expression, p 111-130. In Hatfull GF, Jacobs WR, Jr (ed), Molecular genetics of the mycobacteria. ASM Press, Washington, DC.
    • (2000) Molecular genetics of the mycobacteria , pp. 111-130
    • Gomez, M.1    Smith, I.2
  • 2
    • 26444564152 scopus 로고    scopus 로고
    • Control of mycobacterial transcription
    • In Cole ST, Eisenach KD, McMurray DN, Jacobs WR, Jr (ed), ASM Press, Washington, DC
    • Smith I, Bishai WR, Nagaraja V. 2005. Control of mycobacterial transcription, p 219-231. In Cole ST, Eisenach KD, McMurray DN, Jacobs WR, Jr (ed), Tuberculosis and the tubercle bacillus. ASM Press, Washington, DC.
    • (2005) Tuberculosis and the tubercle bacillus , pp. 219-231
    • Smith, I.1    Bishai, W.R.2    Nagaraja, V.3
  • 3
    • 84874530040 scopus 로고    scopus 로고
    • The complex architecture of mycobacterial promoters
    • Newton-Foot M, Gey van Pittius NC. 2013. The complex architecture of mycobacterial promoters. Tuberculosis (Edinb.) 93:60-74. http://dx.doi.org/10.1016/j.tube.2012.08.003.
    • (2013) Tuberculosis (Edinb.) , vol.93 , pp. 60-74
    • Newton-Foot, M.1    Gey van Pittius, N.C.2
  • 4
    • 84958971501 scopus 로고    scopus 로고
    • Sigma factors: key molecules in Mycobacterium tuberculosis physiology and virulence
    • MGM2-0007-2013
    • Manganelli R. 2014. Sigma factors: key molecules in Mycobacterium tuberculosis physiology and virulence. Microbiol. Spectrum 2(1):MGM2-0007-2013. http://dx.doi.org/10.1128/microbiolspec.MGM2-0007-2013.
    • (2014) Microbiol. Spectrum , vol.2 , Issue.1
    • Manganelli, R.1
  • 5
    • 75149113154 scopus 로고    scopus 로고
    • The sigma factors of Mycobacterium tuberculosis: regulation of the regulators
    • Sachdeva P, Misra R, Tyagi AK, Singh Y. 2010. The sigma factors of Mycobacterium tuberculosis: regulation of the regulators. FEBS J. 277:605-626. http://dx.doi.org/10.1111/j.1742-4658.2009.07479.x.
    • (2010) FEBS J. , vol.277 , pp. 605-626
    • Sachdeva, P.1    Misra, R.2    Tyagi, A.K.3    Singh, Y.4
  • 6
    • 0029747225 scopus 로고    scopus 로고
    • A study of mycobacterial transcriptional apparatus: identification of novel features in promoter elements
    • Bashyam MD, Kaushal D, Dasgupta SK, Tyagi AK. 1996. A study of mycobacterial transcriptional apparatus: identification of novel features in promoter elements. J. Bacteriol. 178:4847-4853.
    • (1996) J. Bacteriol. , vol.178 , pp. 4847-4853
    • Bashyam, M.D.1    Kaushal, D.2    Dasgupta, S.K.3    Tyagi, A.K.4
  • 7
    • 0031396383 scopus 로고    scopus 로고
    • Mycobacterial promoters
    • Mulder MA, Zappe H, Steyn LM. 1997. Mycobacterial promoters. Tuber. Lung Dis. 78:211-223. http://dx.doi.org/10.1016/S0962-8479(97)90001-0.
    • (1997) Tuber. Lung Dis. , vol.78 , pp. 211-223
    • Mulder, M.A.1    Zappe, H.2    Steyn, L.M.3
  • 8
    • 0036776767 scopus 로고    scopus 로고
    • DNA gyrase genes in Mycobacterium tuberculosis: a single operon driven by multiple promoters
    • Unniraman S, Chatterji M, Nagaraja V. 2002. DNA gyrase genes in Mycobacterium tuberculosis: a single operon driven by multiple promoters. J. Bacteriol. 184:5449-5456. http://dx.doi.org/10.1128/JB.184.19.5449-5456.2002.
    • (2002) J. Bacteriol. , vol.184 , pp. 5449-5456
    • Unniraman, S.1    Chatterji, M.2    Nagaraja, V.3
  • 9
    • 84884922085 scopus 로고    scopus 로고
    • Regulation of transcription in mycobacteria
    • Tare P, Nagaraja V. 2013. Regulation of transcription in mycobacteria. Curr. Sci. 105:632-642.
    • (2013) Curr. Sci. , vol.105 , pp. 632-642
    • Tare, P.1    Nagaraja, V.2
  • 10
    • 33749150995 scopus 로고    scopus 로고
    • Mycobacterial transcriptional signals: requirements for recognition by RNA polymerase and optimal transcriptional activity
    • Agarwal N, Tyagi AK. 2006. Mycobacterial transcriptional signals: requirements for recognition by RNA polymerase and optimal transcriptional activity. Nucleic Acids Res. 34:4245-4257. http://dx.doi.org/10.1093/nar/gkl521.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 4245-4257
    • Agarwal, N.1    Tyagi, A.K.2
  • 11
    • 0142011474 scopus 로고    scopus 로고
    • Role of 5'-TGN-3' motif in the interaction of mycobacterial RNA polymerase with a promoter of 'extended-10' class
    • Agarwal N, Tyagi AK. 2003. Role of 5'-TGN-3' motif in the interaction of mycobacterial RNA polymerase with a promoter of 'extended-10' class. FEMS Microbiol. Lett. 225:75-83. http://dx.doi.org/10.1016/S0378-1097(03)00483-X.
    • (2003) FEMS Microbiol. Lett. , vol.225 , pp. 75-83
    • Agarwal, N.1    Tyagi, A.K.2
  • 12
    • 84858273407 scopus 로고    scopus 로고
    • The secret lives of mycobacteriophages
    • Hatfull GF. 2012. The secret lives of mycobacteriophages. Adv. Virus Res. 82:179-288. http://dx.doi.org/10.1016/B978-0-12-394621-8.00015-7.
    • (2012) Adv. Virus Res. , vol.82 , pp. 179-288
    • Hatfull, G.F.1
  • 13
    • 84936994908 scopus 로고    scopus 로고
    • Molecular genetics of mycobacteriophages. Microbiol
    • MGM2-0032-2013
    • Hatfull GF. 2014. Molecular genetics of mycobacteriophages. Microbiol. Spectrum 2(2):MGM2-0032-2013. http://dx.doi.org/10.1128/microbiolspec.MGM2-0032-2013.
    • (2014) Spectrum , vol.2 , Issue.2
    • Hatfull, G.F.1
  • 14
    • 0027456546 scopus 로고
    • DNA sequence, structure and gene expression of mycobacteriophage L5: a phage system for mycobacterial genetics
    • Hatfull GF, Sarkis GJ. 1993. DNA sequence, structure and gene expression of mycobacteriophage L5: a phage system for mycobacterial genetics. Mol. Microbiol. 7:395-405. http://dx.doi.org/10.1111/j.1365-2958.1993.tb01131.x.
    • (1993) Mol. Microbiol. , vol.7 , pp. 395-405
    • Hatfull, G.F.1    Sarkis, G.J.2
  • 16
    • 0032453269 scopus 로고    scopus 로고
    • Mycobacteriophage TM4: genome structure and gene expression
    • Ford ME, Stenstrom C, Hendrix RW, Hatfull GF. 1998. Mycobacteriophage TM4: genome structure and gene expression. Tuber. Lung Dis. 79:63-73. http://dx.doi.org/10.1054/tuld.1998.0007.
    • (1998) Tuber. Lung Dis. , vol.79 , pp. 63-73
    • Ford, M.E.1    Stenstrom, C.2    Hendrix, R.W.3    Hatfull, G.F.4
  • 17
    • 84876699625 scopus 로고    scopus 로고
    • Functional requirements for bacteriophage growth: gene essentiality and expression in mycobacteriophage Giles
    • Dedrick RM, Marinelli LJ, Newton GL, Pogliano K, Pogliano J, Hatfull GF. 2013. Functional requirements for bacteriophage growth: gene essentiality and expression in mycobacteriophage Giles. Mol. Microbiol. 88:577-589. http://dx.doi.org/10.1111/mmi.12210.
    • (2013) Mol. Microbiol. , vol.88 , pp. 577-589
    • Dedrick, R.M.1    Marinelli, L.J.2    Newton, G.L.3    Pogliano, K.4    Pogliano, J.5    Hatfull, G.F.6
  • 18
    • 0942278888 scopus 로고    scopus 로고
    • Cloning and characterization of the promoters of temperate mycobacteriophage L1
    • Chattopadhyay C, Sau S, Mandal NC. 2003. Cloning and characterization of the promoters of temperate mycobacteriophage L1. J. Biochem. Mol. Biol. 36:586-592. http://dx.doi.org/10.5483/BMBRep.2003.36.6.586.
    • (2003) J. Biochem. Mol. Biol. , vol.36 , pp. 586-592
    • Chattopadhyay, C.1    Sau, S.2    Mandal, N.C.3
  • 19
    • 0036098510 scopus 로고    scopus 로고
    • Expression of mycobacteriophage Ms6 lysis genes is driven by two sigma(70)-like promoters and is dependent on a transcription termination signal present in the leader RNA
    • Garcia M, Pimentel M, Moniz-Pereira J. 2002. Expression of mycobacteriophage Ms6 lysis genes is driven by two sigma(70)-like promoters and is dependent on a transcription termination signal present in the leader RNA. J. Bacteriol. 184:3034-3043. http://dx.doi.org/10.1128/JB.184.11.3034-3043.2002.
    • (2002) J. Bacteriol. , vol.184 , pp. 3034-3043
    • Garcia, M.1    Pimentel, M.2    Moniz-Pereira, J.3
  • 20
    • 0034537738 scopus 로고    scopus 로고
    • Transcriptional regulation and immunity in mycobacteriophage Bxb1
    • Jain S, Hatfull GF. 2000. Transcriptional regulation and immunity in mycobacteriophage Bxb1. Mol. Microbiol. 38:971-985. http://dx.doi.org/10.1046/j.1365-2958.2000.02184.x.
    • (2000) Mol. Microbiol. , vol.38 , pp. 971-985
    • Jain, S.1    Hatfull, G.F.2
  • 21
    • 0028800051 scopus 로고
    • Transcriptional regulation of repressor synthesis in mycobacteriophage L5
    • Nesbit CE, Levin ME, Donnelly-Wu MK, Hatfull GF. 1995. Transcriptional regulation of repressor synthesis in mycobacteriophage L5. Mol. Microbiol. 17:1045-1056. http://dx.doi.org/10.1111/j.1365-2958.1995.mmi_17061045.x.
    • (1995) Mol. Microbiol. , vol.17 , pp. 1045-1056
    • Nesbit, C.E.1    Levin, M.E.2    Donnelly-Wu, M.K.3    Hatfull, G.F.4
  • 22
    • 0029451264 scopus 로고
    • Cloning and characterization of mycobacteriophage I3 promoters
    • (Erratum, 33:83, 1996.)
    • Ramesh G, Gopinathan KP. 1995. Cloning and characterization of mycobacteriophage I3 promoters. Indian J. Biochem. Biophys. 32:361-367. (Erratum, 33:83, 1996.)
    • (1995) Indian J. Biochem. Biophys , vol.32 , pp. 361-367
    • Ramesh, G.1    Gopinathan, K.P.2
  • 23
    • 51149088912 scopus 로고    scopus 로고
    • Identification of three cytotoxic early proteins of mycobacteriophage L5 leading to growth inhibition in Mycobacterium smegmatis
    • Rybniker J, Plum G, Robinson N, Small PL, Hartmann P. 2008. Identification of three cytotoxic early proteins of mycobacteriophage L5 leading to growth inhibition in Mycobacterium smegmatis. Microbiology 154:2304-2314. http://dx.doi.org/10.1099/mic.0.2008/017004-0.
    • (2008) Microbiology , vol.154 , pp. 2304-2314
    • Rybniker, J.1    Plum, G.2    Robinson, N.3    Small, P.L.4    Hartmann, P.5
  • 24
    • 0030803306 scopus 로고    scopus 로고
    • Transcriptional silencing by the mycobacteriophage L5 repressor
    • Brown KL, Sarkis GJ, Wadsworth C, Hatfull GF. 1997. Transcriptional silencing by the mycobacteriophage L5 repressor. EMBOJ. 16:5914-5921. http://dx.doi.org/10.1093/emboj/16.19.5914.
    • (1997) EMBOJ. , vol.16 , pp. 5914-5921
    • Brown, K.L.1    Sarkis, G.J.2    Wadsworth, C.3    Hatfull, G.F.4
  • 25
    • 84872783870 scopus 로고    scopus 로고
    • Integration-dependent bacteriophage immunity provides insights into the evolution of genetic switches
    • Broussard GW, Oldfield LM, Villanueva VM, Lunt BL, Shine EE, Hatfull GF. 2013. Integration-dependent bacteriophage immunity provides insights into the evolution of genetic switches. Mol. Cell 49:237-248. http://dx.doi.org/10.1016/j.molcel.2012.11.012.
    • (2013) Mol. Cell , vol.49 , pp. 237-248
    • Broussard, G.W.1    Oldfield, L.M.2    Villanueva, V.M.3    Lunt, B.L.4    Shine, E.E.5    Hatfull, G.F.6
  • 26
    • 69949178774 scopus 로고    scopus 로고
    • Mycobacteriophages BPs, Angel and Halo: comparative genomics reveals a novel class of ultra-small mobile genetic elements
    • Sampson T, Broussard GW, Marinelli LJ, Jacobs-Sera D, Ray M, Ko CC, Russell D, Hendrix RW, Hatfull GF. 2009. Mycobacteriophages BPs, Angel and Halo: comparative genomics reveals a novel class of ultra-small mobile genetic elements. Microbiology 155:2962-2977. http://dx.doi.org/10.1099/mic.0.030486-0.
    • (2009) Microbiology , vol.155 , pp. 2962-2977
    • Sampson, T.1    Broussard, G.W.2    Marinelli, L.J.3    Jacobs-Sera, D.4    Ray, M.5    Ko, C.C.6    Russell, D.7    Hendrix, R.W.8    Hatfull, G.F.9
  • 28
    • 84869887217 scopus 로고    scopus 로고
    • Recombinant live vaccine candidates against tuberculosis
    • Kaufmann SH, Gengenbacher M. 2012. Recombinant live vaccine candidates against tuberculosis. Curr. Opin. Biotechnol. 23:900-907. http://dx.doi.org/10.1016/j.copbio.2012.03.007.
    • (2012) Curr. Opin. Biotechnol. , vol.23 , pp. 900-907
    • Kaufmann, S.H.1    Gengenbacher, M.2
  • 30
    • 77957001031 scopus 로고    scopus 로고
    • Taking phage integration to the next level as a genetic tool for mycobacteria
    • Huff J, Czyz A, Landick R, Niederweis M. 2010. Taking phage integration to the next level as a genetic tool for mycobacteria. Gene 468:8-19. http://dx.doi.org/10.1016/j.gene.2010.07.012.
    • (2010) Gene , vol.468 , pp. 8-19
    • Huff, J.1    Czyz, A.2    Landick, R.3    Niederweis, M.4
  • 32
    • 0030806372 scopus 로고    scopus 로고
    • Regulation of the inducible acetamidase gene of Mycobacterium smegmatis
    • Parish T, Mahenthiralingam E, Draper P, Davis EO, Colston MJ. 1997. Regulation of the inducible acetamidase gene of Mycobacterium smegmatis. Microbiology 143:2267-2276. http://dx.doi.org/10.1099/00221287-143-7-2267.
    • (1997) Microbiology , vol.143 , pp. 2267-2276
    • Parish, T.1    Mahenthiralingam, E.2    Draper, P.3    Davis, E.O.4    Colston, M.J.5
  • 33
    • 34347375413 scopus 로고    scopus 로고
    • Controlling gene expression in mycobacteria
    • Ehrt S, Schnappinger D. 2006. Controlling gene expression in mycobacteria. Future Microbiol. 1:177-184. http://dx.doi.org/10.2217/17460913.1.2.177.
    • (2006) Future Microbiol. , vol.1 , pp. 177-184
    • Ehrt, S.1    Schnappinger, D.2
  • 35
    • 33947357684 scopus 로고    scopus 로고
    • Recombineering in Mycobacterium tuberculosis
    • van Kessel JC, Hatfull GF. 2007. Recombineering in Mycobacterium tuberculosis. Nat. Methods 4:147-152. http://dx.doi.org/10.1038/nmeth996.
    • (2007) Nat. Methods , vol.4 , pp. 147-152
    • van Kessel, J.C.1    Hatfull, G.F.2
  • 36
    • 38849190026 scopus 로고    scopus 로고
    • Efficient point mutagenesis in mycobacteria using single-stranded DNA recombineering: characterization of antimycobacterial drug targets
    • van Kessel JC, Hatfull GF. 2008. Efficient point mutagenesis in mycobacteria using single-stranded DNA recombineering: characterization of antimycobacterial drug targets. Mol. Microbiol. 67:1094-1107. http://dx.doi.org/10.1111/j.1365-2958.2008.06109.x.
    • (2008) Mol. Microbiol. , vol.67 , pp. 1094-1107
    • van Kessel, J.C.1    Hatfull, G.F.2
  • 37
    • 0036033757 scopus 로고    scopus 로고
    • Integration and excision of the Mycobacterium tuberculosis prophage-like element, phi Rv1
    • Bibb LA, Hatfull GF. 2002. Integration and excision of the Mycobacterium tuberculosis prophage-like element, phi Rv1. Mol. Microbiol. 45:1515-1526. http://dx.doi.org/10.1046/j.1365-2958.2002.03130.x.
    • (2002) Mol. Microbiol. , vol.45 , pp. 1515-1526
    • Bibb, L.A.1    Hatfull, G.F.2
  • 38
    • 34547886939 scopus 로고    scopus 로고
    • Comparative genomic analysis of mycobacteriophage Tweety: evolutionary insights and construction of compatible site-specific integration vectors for mycobacteria
    • Pham TT, Jacobs-Sera D, Pedulla ML, Hendrix RW, Hatfull GF. 2007. Comparative genomic analysis of mycobacteriophage Tweety: evolutionary insights and construction of compatible site-specific integration vectors for mycobacteria. Microbiology 153:2711-2723. http://dx.doi.org/10.1099/mic.0.2007/008904-0.
    • (2007) Microbiology , vol.153 , pp. 2711-2723
    • Pham, T.T.1    Jacobs-Sera, D.2    Pedulla, M.L.3    Hendrix, R.W.4    Hatfull, G.F.5
  • 39
    • 0027262433 scopus 로고
    • Mycobacterium smegmatis RNA polymerase: DNA supercoiling, action of rifampicin and mechanism of rifampicin resistance
    • Levin ME, Hatfull GF. 1993. Mycobacterium smegmatis RNA polymerase: DNA supercoiling, action of rifampicin and mechanism of rifampicin resistance. Mol. Microbiol. 8:277-285. http://dx.doi.org/10.1111/j.1365-2958.1993.tb01572.x.
    • (1993) Mol. Microbiol. , vol.8 , pp. 277-285
    • Levin, M.E.1    Hatfull, G.F.2
  • 40
    • 0031965086 scopus 로고    scopus 로고
    • The sequence of spacers between the consensus sequences modulates the strength of prokaryotic promoters
    • Jensen PR, Hammer K. 1998. The sequence of spacers between the consensus sequences modulates the strength of prokaryotic promoters. Appl. Environ. Microbiol. 64:82-87.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 82-87
    • Jensen, P.R.1    Hammer, K.2
  • 41
    • 79954939562 scopus 로고    scopus 로고
    • The construction of a library of synthetic promoters revealed some specific features of strong Streptomyces promoters
    • Seghezzi N, Amar P, Koebmann B, Jensen PR, Virolle MJ. 2011. The construction of a library of synthetic promoters revealed some specific features of strong Streptomyces promoters. Appl. Microbiol. Biotechnol. 90:615-623. http://dx.doi.org/10.1007/s00253-010-3018-0.
    • (2011) Appl. Microbiol. Biotechnol. , vol.90 , pp. 615-623
    • Seghezzi, N.1    Amar, P.2    Koebmann, B.3    Jensen, P.R.4    Virolle, M.J.5
  • 42
    • 75149164411 scopus 로고    scopus 로고
    • A single-nucleotide mutation in the-10 promoter region inactivates the narK2X promoter in Mycobacterium bovis and Mycobacterium bovis BCG and has an application in diagnosis
    • Chauhan S, Singh A, Tyagi JS. 2010. A single-nucleotide mutation in the-10 promoter region inactivates the narK2X promoter in Mycobacterium bovis and Mycobacterium bovis BCG and has an application in diagnosis. FEMS Microbiol. Lett. 303:190-196. http://dx.doi.org/10.1111/j.1574-6968.2009.01876.x.
    • (2010) FEMS Microbiol. Lett. , vol.303 , pp. 190-196
    • Chauhan, S.1    Singh, A.2    Tyagi, J.S.3
  • 43
    • 0029936383 scopus 로고    scopus 로고
    • Genetic analysis of the Mycobacterium smegmatis rpsL promoter
    • Kenney TJ, Churchward G. 1996. Genetic analysis of the Mycobacterium smegmatis rpsL promoter. J. Bacteriol. 178:3564-3571.
    • (1996) J. Bacteriol. , vol.178 , pp. 3564-3571
    • Kenney, T.J.1    Churchward, G.2
  • 44
    • 84858609338 scopus 로고    scopus 로고
    • Rational diversification of a promoter providing fine-tuned expression and orthogonal regulation for synthetic biology
    • Blount BA, Weenink T, Vasylechko S, Ellis T. 2012. Rational diversification of a promoter providing fine-tuned expression and orthogonal regulation for synthetic biology. PLoS One 7:e33279. http://dx.doi.org/10.1371/journal.pone.0033279.
    • (2012) PLoS One , vol.7
    • Blount, B.A.1    Weenink, T.2    Vasylechko, S.3    Ellis, T.4
  • 46
    • 84881257161 scopus 로고    scopus 로고
    • Design, construction and characterisation of a synthetic promoter library for finetuned gene expression in actinomycetes
    • Siegl T, Tokovenko B, Myronovskyi M, Luzhetskyy A. 2013. Design, construction and characterisation of a synthetic promoter library for finetuned gene expression in actinomycetes. Metab. Eng. 19:98-106. http://dx.doi.org/10.1016/j.ymben.2013.07.006.
    • (2013) Metab. Eng. , vol.19 , pp. 98-106
    • Siegl, T.1    Tokovenko, B.2    Myronovskyi, M.3    Luzhetskyy, A.4
  • 47
    • 0032513006 scopus 로고    scopus 로고
    • On the mechanism of inhibition of phage T7 RNA polymerase by lac repressor
    • Lopez PJ, Guillerez J, Sousa R, Dreyfus M. 1998. On the mechanism of inhibition of phage T7 RNA polymerase by lac repressor. J. Mol. Biol. 276:861-875. http://dx.doi.org/10.1006/jmbi.1997.1576.
    • (1998) J. Mol. Biol. , vol.276 , pp. 861-875
    • Lopez, P.J.1    Guillerez, J.2    Sousa, R.3    Dreyfus, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.