Genome analysis of NDM-1 producing Morganella morganii clinical isolate

Expert Review of Anti-Infective Therapy

Volumn 12, Issue 10, 2014, Pages 1297-1305

  Olaitan, Abiola Olumuyiwa ^a   Diene, Seydina M ^a   Gupta, Sushim Kumar ^a   Adler, Amos ^b   Assous, Marc Victor ^c   Rolain, Jean Marc ^a  

^a AIX MARSEILLE UNIVERSITÉ   (France)

^b MINISTRY OF HEALTH   (Israel)

^c SHAARE ZEDEK MEDICAL CENTER   (Israel)

Author keywords

intrinsic colistin resistance; multidrug resistant bacteria; NDM 1; O antigen; resistome; virulence genes

Indexed keywords

BACTERIAL ENZYME; LIPID A; NEW DELHI METALLO BETA LACTAMASE 1; UNCLASSIFIED DRUG; BACTERIAL PROTEIN; BETA LACTAMASE; BETA-LACTAMASE NDM-1; O ANTIGEN; UREASE;

ACINETOBACTER; ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL VIRULENCE; BACTERIUM ISOLATE; BACTERIUM ISOLATION; BIOSYNTHESIS; CONTROLLED STUDY; DNA BASE COMPOSITION; DNA SEQUENCE; GENE CLUSTER; GENE LOCATION; GENE SEQUENCE; GENOME ANALYSIS; ISRAEL; MORGANELLA MORGANII; NONHUMAN; NUCLEOTIDE SEQUENCE; SEQUENCE ANALYSIS; WHOLE GENOME SEQUENCING; GENETICS; ISOLATION AND PURIFICATION; MULTIGENE FAMILY; PATHOGENICITY; PHYLOGENY; ULTRASTRUCTURE; VIRULENCE;

BACTERIAL PROTEINS; BETA-LACTAMASES; DRUG RESISTANCE, BACTERIAL; GENOME, BACTERIAL; MORGANELLA MORGANII; MULTIGENE FAMILY; O ANTIGENS; PHYLOGENY; SEQUENCE ANALYSIS, DNA; UREASE; VIRULENCE;

EID: 84907050438     PISSN: 14787210     EISSN: 17448336     Source Type: Journal    
DOI: 10.1586/14787210.2014.944504     Document Type: Article

References (37)

1. Brenner Donj, Farmer JJ, Fanning GR, et al. Deoxyribonucleic acid relatedness of proteus and providencia species. Int J Syst Bacteriol 1978;28(2):269-82
2. O'Hara CM, Brenner FW, Miller JM. Classification, identification, and clinical significance of Proteus, Providencia, and Morganella. Clin Microbiol Rev 2000; 13(4):534-46
3. Lee IK, Liu JW. Clinical characteristics and risk factors for mortality in Morganella morganii bacteremia. J Microbiol Immunol Infect 2006;39(4):328-34
4. Stock I, Wiedemann B. Identification and natural antibiotic susceptibility of Morganella morganii. Diagn Microbiol Infect Dis 1998;30(3):153-65
5. Rohde H, Qin J, Cui Y, et al. Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4. N Engl J Med 2011; 365(8):718-24
6. Chin CS, Sorenson J, Harris JB, et al. The origin of the Haitian cholera outbreak strain. N Engl J Med 2011;364(1):33-42
7. Hasman H, Saputra D, Sicheritz-Ponten T, et al. Rapid whole-genome sequencing for detection and characterization of microorganisms directly from clinical samples. J Clin Microbiol 2014;52(1): 139-46
8. Stoesser N, Batty EM, Eyre DW, et al. Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data. J Antimicrob Chemother 2013;68(10): 2234-44
9. Zankari E, Hasman H, Kaas RS, et al. Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing. J Antimicrob Chemother 2013; 68(4):771-7
10. Bogaerts P, Bouchahrouf W, de Castro RR, et al. Emergence of NDM-1-producing Enterobacteriaceae in Belgium. Antimicrob Agents Chemother 2011;55(6):3036-8
11. Deshpande P, Rodrigues C, Shetty A, et al. New Delhi Metallo-beta lactamase (NDM-1) in Enterobacteriaceae: treatment options with carbapenems compromised. J Assoc Physicians India 2010;58:147-9
12. Kumarasamy KK, Toleman MA, Walsh TR, et al. Emergence of a new antibiotic resistance mechanism in India, Pakistan, and the UK: a molecular, biological, and epidemiological study. Lancet Infect Dis 2010;10(9):597-602
13. Kus J V, Tadros M, Simor A, et al. New Delhi metallo-beta-lactamase-1: local acquisition in Ontario, Canada, and challenges in detection. CMAJ 2011; 183(11):1257-61
14. Lascols C, Hackel M, Marshall SH, et al. Increasing prevalence and dissemination of NDM-1 metallo-beta-lactamase in India: data from the SMART study (2009). J Antimicrob Chemother 2011;66(9):1992-7
15. Wang X, Liu W, Zou D, et al. High rate of New Delhi metallo-beta-lactamase 1-producing bacterial infection in China. Clin Infect Dis 2013;56(1):161-2
16. Lachish T, Elimelech M, Arieli N, et al. Emergence of New Delhi metallo-beta-lactamase in Jerusalem, Israel. Int J Antimicrob Agents 2012;40(6):566-7
17. Margulies M, Egholm M, Altman WE, et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005;437(7057):376-80
18. Shendure J, Porreca GJ, Reppas NB, et al. Accurate multiplex polony sequencing of an evolved bacterial genome. Science 2005; 309(5741):1728-32
19. Aziz RK, Bartels D, Best AA, et al. The RAST Server: rapid annotations using subsystems technology. BMC Genomics 2008;9:75 Available from: www.bioinformatics.org/findtrna/FindtRNA.html
20. Lagesen K, Hallin P, Rodland EA, et al. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res 2007;35(9):3100-8
21. Zhou Y, Liang Y, Lynch KH, et al. PHAST: a fast phage search tool. Nucleic Acids Res 2011;39:W347-52. Available from: http://phast.wishartlab.com/
22. Gupta SK, Padmanabhan BR, Diene SM, et al. ARG-ANNOT, a new bioinformatic tool to discover antibiotic resistance genes in bacterial genomes. Antimicrob Agents Chemother 2014;58(1):212-20
23. Luft JH. Ruthenium red and violet. I. Chemistry, purification, methods of use for electron microscopy and mechanism of action. Anat Rec 1971;171(3):347-68
24. Chen YT, Peng HL, Shia WC, et al. Whole-genome sequencing and identification of Morganella morganii KT pathogenicity-related genes. BMC Genomics 2012;13(Suppl 7):S4
25. Raetz CR, Reynolds CM, Trent MS, Bishop RE. Lipid A modification systems in gram-negative bacteria. Annu Rev Biochem 2007;76:295-329
26. Ovchinnikova OG, Liu B, Guo D, et al. Localization and molecular characterization of putative O antigen gene clusters of Providencia species. Microbiology 2012; 158(Pt 4):1024-36
27. Wang Q, Torzewska A, Ruan X, et al. Molecular and genetic analyses of the putative Proteus O antigen gene locus. Appl Environ Microbiol 2010;76(16):5471-8
28. Pearson MM, Sebaihia M, Churcher C, et al. Complete genome sequence of uropathogenic Proteus mirabilis, a master of both adherence and motility. J Bacteriol 2008;190(11):4027-37
29. Jensen KT, Frederiksen W, Hickman-Brenner FW, et al. Recognition of Morganella subspecies, with proposal of Morganella morganii subsp. morganii subsp. nov. and Morganella morganii subsp. sibonii subsp. nov. Int J Syst Bacteriol 1992;42(4):613-20
30. Canchaya C, Proux C, Fournous G, et al. Prophage genomics. Microbiol Mol Biol Rev 2003;67(2):238-76
31. Johnson AP, Woodford N. Global spread of antibiotic resistance: the example of New Delhi metallo-beta-lactamase (NDM)-mediated carbapenem resistance. J Med Microbiol 2013;62(Pt 4):499-513
32. Campos MA, Vargas MA, Regueiro V, et al. Capsule polysaccharide mediates bacterial resistance to antimicrobial peptides. Infect Immun 2004;72(12):7107-14
33. Loutet SA, Valvano MA. Extreme antimicrobial Peptide and polymyxin B resistance in the genus burkholderia. Front Microbiol 2011;2:159
34. Voros S, Senior BW. New O antigens of Morganella morganii and the relationships between haemolysin production. O antigens and morganocin types of strains. Acta Microbiol Hung 1990;37(4):341-9
35. Gebhart-Mueller Y, Mueller P, Nixon B. Unusual case of postoperative infection caused by Morganella morganii. J Foot Ankle Surg 1998;37(2):145-7
36. Ghosh S, Bal AM, Malik I, Collier A. Fatal Morganella morganii bacteraemia in a diabetic patient with gas gangrene. J Med Microbiol 2009;58(Pt 7):965-7
37. Parkhill J, Wren BW. Bacterial epidemiology and biology-lessons from genome sequencing. Genome Biol 2011; 12(10):230