-
1
-
-
78651325932
-
LncRNAdb: A reference database for long noncoding RNAs
-
Amaral, P.P. et al. (2011) lncRNAdb: a reference database for long noncoding RNAs. Nucleic Acids Res., 39, D146-D151.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Amaral, P.P.1
-
2
-
-
84883364264
-
Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
-
Anders, S. et al. (2013) Count-based differential expression analysis of RNA sequencing data using R and Bioconductor. Nat. Protoc., 8, 1765-1786.
-
(2013)
Nat. Protoc
, vol.8
, pp. 1765-1786
-
-
Anders, S.1
-
3
-
-
84885912472
-
LncRNome: A comprehensive knowledgebase of human long noncoding RNAs
-
Bhartiya, D. et al. (2013) lncRNome: a comprehensive knowledgebase of human long noncoding RNAs. Database, 2013, bat034.
-
(2013)
Database
, vol.2013
-
-
Bhartiya, D.1
-
4
-
-
80054976678
-
The evolution of gene expression levels in mammalian organs
-
Brawand, D. et al. (2011) The evolution of gene expression levels in mammalian organs. Nature, 478, 343-348.
-
(2011)
Nature
, vol.478
, pp. 343-348
-
-
Brawand, D.1
-
5
-
-
84860742355
-
NONCODE v3.0: Integrative annotation of long noncoding RNAs
-
Bu, D. et al. (2012) NONCODE v3.0: integrative annotation of long noncoding RNAs. Nucleic Acids Res., 40, D210-D215.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Bu, D.1
-
6
-
-
80052978224
-
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
-
Cabili, M.N. et al. (2011) Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev., 25, 1915-1927.
-
(2011)
Genes Dev
, vol.25
, pp. 1915-1927
-
-
Cabili, M.N.1
-
7
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
-
Derrien, T. et al. (2012) The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res., 22, 1775-1789.
-
(2012)
Genome Res
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
-
8
-
-
58149177177
-
NRED: A database of long noncoding RNA expression
-
Dinger, M.E. et al. (2009) NRED: a database of long noncoding RNA expression. Nucleic Acids Res., 37, D122-D126.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Dinger, M.E.1
-
9
-
-
84863495094
-
The hallmarks of cancer: A long non-coding RNA point of view
-
Gutschner, T. and Diederichs, S. (2012) The hallmarks of cancer: a long non-coding RNA point of view. RNA Biol., 9, 703-719.
-
(2012)
RNA Biol
, vol.9
, pp. 703-719
-
-
Gutschner, T.1
Diederichs, S.2
-
10
-
-
84873451950
-
The noncoding RNA MALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells
-
Gutschner, T. et al. (2013) The noncoding RNA MALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells. Cancer Res., 73, 1180-1189.
-
(2013)
Cancer Res
, vol.73
, pp. 1180-1189
-
-
Gutschner, T.1
-
11
-
-
84876996918
-
TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
-
Kim, D. et al. (2013) TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol., 14, R36.
-
(2013)
Genome Biol
, vol.14
-
-
Kim, D.1
-
12
-
-
34547582418
-
CPC: Assess the protein-coding potential of transcripts using sequence features and support vector machine
-
Kong, L. et al. (2007) CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine. Nucleic Acids Res., 35, W345-W349.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Kong, L.1
-
13
-
-
79961123152
-
RSEM: Accurate transcript quantification from RNASeq data with or without a reference genome
-
Li, B. and Dewey, C.N. (2011) RSEM: accurate transcript quantification from RNASeq data with or without a reference genome. BMC Bioinformatics, 12, 323.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 323
-
-
Li, B.1
Dewey, C.N.2
-
14
-
-
84877291550
-
RIPSeeker: A statistical package for identifying protein-associated transcripts from RIP-seq experiments
-
Li, Y. et al. (2013) RIPSeeker: a statistical package for identifying protein-associated transcripts from RIP-seq experiments. Nucleic Acids Res., 41, e94.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Li, Y.1
-
15
-
-
84891818924
-
StarBase v2.0: Decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data
-
Li, J.H. et al. (2014) starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data. Nucleic Acids Res., 42, D92-D97.
-
(2014)
Nucleic Acids Res
, vol.42
-
-
Li, J.H.1
-
16
-
-
79956010263
-
Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene coexpression network
-
Liao, Q. et al. (2011) Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene coexpression network. Nucleic Acids Res., 39, 3864-3878.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 3864-3878
-
-
Liao, Q.1
-
17
-
-
84883736533
-
CCAT2, a novel noncoding RNA mapping to 8q24, underlies metastatic progression and chromosomal instability in colon cancer
-
Ling, H. et al. (2013) CCAT2, a novel noncoding RNA mapping to 8q24, underlies metastatic progression and chromosomal instability in colon cancer. Genome Res., 23, 1446-1461.
-
(2013)
Genome Res
, vol.23
, pp. 1446-1461
-
-
Ling, H.1
-
18
-
-
84871433249
-
Long noncoding RNA involvement in cancer
-
Maruyama, R. and Suzuki, H. (2012) Long noncoding RNA involvement in cancer. BMB Rep., 45, 604-611.
-
(2012)
BMB Rep
, vol.45
, pp. 604-611
-
-
Maruyama, R.1
Suzuki, H.2
-
19
-
-
84881487023
-
The long noncoding RNA RMST interacts with SOX2 to regulate neurogenesis
-
Ng, S.Y. et al. (2013) The long noncoding RNA RMST interacts with SOX2 to regulate neurogenesis. Mol. Cell, 51, 349-359.
-
(2013)
Mol. Cell
, vol.51
, pp. 349-359
-
-
Ng, S.Y.1
-
20
-
-
74949092081
-
Detection of nonneutral substitution rates on mammalian phylogenies
-
Pollard, K.S. et al. (2010) Detection of nonneutral substitution rates on mammalian phylogenies. Genome Res., 20, 110-121.
-
(2010)
Genome Res
, vol.20
, pp. 110-121
-
-
Pollard, K.S.1
-
21
-
-
84865121188
-
An encyclopedia of mouse DNA elements (Mouse ENCODE)
-
Stamatoyannopoulos, J.A. et al. (2012) An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome Biol., 13, 418.
-
(2012)
Genome Biol
, vol.13
, pp. 418
-
-
Stamatoyannopoulos, J.A.1
-
22
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell, C. et al. (2010) Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol., 28, 511-515.
-
(2010)
Nat. Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
-
23
-
-
84872198346
-
Differential analysis of gene regulation at transcript resolution with RNA-seq
-
Trapnell, C. et al. (2013) Differential analysis of gene regulation at transcript resolution with RNA-seq. Nat. Biotechnol., 31, 46-53.
-
(2013)
Nat. Biotechnol
, vol.31
, pp. 46-53
-
-
Trapnell, C.1
-
24
-
-
84875530540
-
LNCipedia: A database for annotated human lncRNA transcript sequences and structures
-
Volders, P.J. et al. (2013) LNCipedia: a database for annotated human lncRNA transcript sequences and structures. Nucleic Acids Res., 41, D246-D251.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Volders, P.J.1
-
25
-
-
84891798006
-
NONCODEv4: Exploring the world of long non-coding RNA genes
-
Xie, C. et al. (2014) NONCODEv4: exploring the world of long non-coding RNA genes. Nucleic Acids Res., 42, D98-D103.
-
(2014)
Nucleic Acids Res
, vol.42
-
-
Xie, C.1
-
26
-
-
84891773261
-
NPInter v2.0: An updated database of ncRNA interactions
-
Yuan, J. et al. (2014) NPInter v2.0: an updated database of ncRNA interactions. Nucleic Acids Res., 42, D104-D108.
-
(2014)
Nucleic Acids Res
, vol.42
-
-
Yuan, J.1
|