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Journal of Bacteriology
Volumn 196, Issue 19, 2014, Pages 3503-3515
Pleiotropic and epistatic behavior of a ring-hydroxylating oxygenase system in the polycyclic aromatic hydrocarbon metabolic network from Mycobacterium vanbaalenii PYR-1
Author keywords

[No Author keywords available]
Indexed keywords

ANTHRACENE; BENZO[A]PYRENE; BIPHENYL; FLUORENE; OXYGENASE; PHENANTHRENE; RING HYDROXYLATING OXYGENASE; UNCLASSIFIED DRUG; BACTERIAL PROTEIN; POLYCYCLIC AROMATIC HYDROCARBON;
EID: 84907015385     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.01945-14     Document Type: Article
Times cited : (29)
References (56)
  • 1
    • 0024023560 scopus 로고
    • Mineralization of polycyclic aromatic hydrocarbons by a bacterium isolated from sediment below an oil field
    • Heitkamp MA, Cerniglia CE. 1988. Mineralization of polycyclic aromatic hydrocarbons by a bacterium isolated from sediment below an oil field. Appl. Environ. Microbiol. 54:1612-1614.
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 1612-1614
    • Heitkamp, M.A.1    Cerniglia, C.E.2
  • 2
    • 0024100908 scopus 로고
    • Microbial metabolism of polycyclic aromatic hydrocarbons: isolation and characterization of a pyrene-degrading bacterium
    • Heitkamp MA, Franklin W, Cerniglia CE. 1988. Microbial metabolism of polycyclic aromatic hydrocarbons: isolation and characterization of a pyrene-degrading bacterium. Appl. Environ. Microbiol. 54:2549-2555.
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 2549-2555
    • Heitkamp, M.A.1    Franklin, W.2    Cerniglia, C.E.3
  • 3
    • 0023697276 scopus 로고
    • Pyrene degradation by a Mycobacterium sp.: identification of ring oxidation and ring fission products
    • Heitkamp MA, Freeman JP, Miller DW, Cerniglia CE. 1988. Pyrene degradation by a Mycobacterium sp.: identification of ring oxidation and ring fission products. Appl. Environ. Microbiol. 54:2556-2565.
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 2556-2565
    • Heitkamp, M.A.1    Freeman, J.P.2    Miller, D.W.3    Cerniglia, C.E.4
  • 4
    • 0036866607 scopus 로고    scopus 로고
    • Classification of a polycyclic aromatic hydrocarbon-metabolizing bacterium, Mycobacterium sp. strain PYR-1, as Mycobacterium vanbaalenii sp. nov.
    • Khan AA, Kim SJ, Paine DD, Cerniglia CE. 2002. Classification of a polycyclic aromatic hydrocarbon-metabolizing bacterium, Mycobacterium sp. strain PYR-1, as Mycobacterium vanbaalenii sp. nov. Int. J. Syst. Evol. Microbiol. 52(Pt 6):1997-2002. http://dx.doi.org/10.1099/ijs.0 .02163-0.
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 1997
    • Khan, A.A.1    Kim, S.J.2    Paine, D.D.3    Cerniglia, C.E.4
  • 5
    • 0024099724 scopus 로고
    • Bacterial oxidation of chemical carcinogens: formation of polycyclic aromatic acids from benz[ a]anthracene
    • Mahaffey WR, Gibson DT, Cerniglia CE. 1988. Bacterial oxidation of chemical carcinogens: formation of polycyclic aromatic acids from benz[ a]anthracene. Appl. Environ. Microbiol. 54:2415-2423.
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 2415-2423
    • Mahaffey, W.R.1    Gibson, D.T.2    Cerniglia, C.E.3
  • 6
    • 0025525994 scopus 로고
    • Identification of metabolites from degradation of naphthalene by a Mycobacterium sp
    • Kelley I, Freeman JP, Cerniglia CE. 1990. Identification of metabolites from degradation of naphthalene by a Mycobacterium sp. Biodegradation 1:283-290. http://dx.doi.org/10.1007/BF00119765.
    • (1990) Biodegradation , vol.1 , pp. 283
    • Kelley, I.1    Freeman, J.P.2    Cerniglia, C.E.3
  • 8
    • 0027535396 scopus 로고
    • Identification of metabolites from the degradation of fluoranthene by Mycobacterium sp. strain PYR-1.
    • Kelley I, Freeman JP, Evans FE, Cerniglia CE. 1993. Identification of metabolites from the degradation of fluoranthene by Mycobacterium sp. strain PYR-1. Appl. Environ. Microbiol. 59:800-806.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 800-806
    • Kelley, I.1    Freeman, J.P.2    Evans, F.E.3    Cerniglia, C.E.4
  • 9
    • 0029104149 scopus 로고
    • Degradation of a mixture of highmolecular- weight polycyclic aromatic hydrocarbons by a Mycobacterium strain PYR-1
    • Kelley I, Cerniglia CE. 1995. Degradation of a mixture of highmolecular- weight polycyclic aromatic hydrocarbons by a Mycobacterium strain PYR-1. J. Soil Contam. 4:77-91. http://dx.doi.org/10.1080 /15320389509383482.
    • (1995) J. Soil Contam. , vol.4 , pp. 77
    • Kelley, I.1    Cerniglia, C.E.2
  • 10
    • 0035318658 scopus 로고    scopus 로고
    • Degradation of phenanthrene and anthracene by cell suspensions of Mycobacterium sp. strain PYR-1
    • Moody JD, Freeman JP, Doerge DR, Cerniglia CE. 2001. Degradation of phenanthrene and anthracene by cell suspensions of Mycobacterium sp. strain PYR-1. Appl. Environ. Microbiol. 67:1476-1483. http://dx.doi.org /10.1128/AEM.67.4.1476-1483.2001.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 1476
    • Moody, J.D.1    Freeman, J.P.2    Doerge, D.R.3    Cerniglia, C.E.4
  • 12
    • 0347760384 scopus 로고    scopus 로고
    • Degradation of benzo[a]pyrene by Mycobacterium vanbaalenii PYR-1
    • Moody JD, Freeman JP, Fu PP, Cerniglia CE. 2004. Degradation of benzo[a]pyrene by Mycobacterium vanbaalenii PYR-1. Appl. Environ. Microbiol. 70:340-345. http://dx.doi.org/10.1128/AEM.70.1.340-345.2004.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 340
    • Moody, J.D.1    Freeman, J.P.2    Fu, P.P.3    Cerniglia, C.E.4
  • 13
    • 33846251226 scopus 로고    scopus 로고
    • Complete and integrated pyrene degradation pathway in Mycobacterium vanbaalenii PYR-1 based on systems biology
    • Kim SJ, Kweon O, Jones RC, Freeman JP, Edmondson RD, Cerniglia CE. 2007. Complete and integrated pyrene degradation pathway in Mycobacterium vanbaalenii PYR-1 based on systems biology. J. Bacteriol. 189: 464-472. http://dx.doi.org/10.1128/JB.01310-06.
    • (2007) J. Bacteriol. , vol.189 , pp. 464
    • Kim, S.J.1    Kweon, O.2    Jones, R.C.3    Freeman, J.P.4    Edmondson, R.D.5    Cerniglia, C.E.6
  • 14
    • 34347401651 scopus 로고    scopus 로고
    • A polyomic approach to elucidate the fluoranthene degradative pathway in Mycobacterium vanbaalenii PYR-1
    • Kweon O, Kim SJ, Jones RC, Freeman JP, Adjei MD, Edmondson RD, Cerniglia CE. 2007. A polyomic approach to elucidate the fluoranthene degradative pathway in Mycobacterium vanbaalenii PYR-1. J. Bacteriol. 189:4635-4647. http://dx.doi.org/10.1128/JB.00128-07.
    • (2007) J. Bacteriol. , vol.189 , pp. 4635
    • Kweon, O.1    Kim, S.J.2    Jones, R.C.3    Freeman, J.P.4    Adjei, M.D.5    Edmondson, R.D.6    Cerniglia, C.E.7
  • 15
    • 0021700508 scopus 로고
    • Microbial metabolism of polycyclic aromatic hydrocarbons
    • Cerniglia CE. 1984. Microbial metabolism of polycyclic aromatic hydrocarbons. Adv. Appl. Microbiol. 30:31-71. http://dx.doi.org/10.1016 /S0065-2164(08)70052-2.
    • (1984) Adv. Appl. Microbiol. , vol.30 , pp. 31
    • Cerniglia, C.E.1
  • 16
    • 79952148632 scopus 로고    scopus 로고
    • Degradation of polycyclic aromatic hydrocarbons by Mycobacterium strains
    • Timmis KN (ed), Springer, Braunschweig, Germany
    • Kim SJ, Kweon O, Cerniglia CE. 2010. Degradation of polycyclic aromatic hydrocarbons by Mycobacterium strains, p 1865-1880. In Timmis KN (ed), Handbook of hydrocarbon and lipid microbiology, vol 3. Springer, Braunschweig, Germany.
    • (2010) Handbook of hydrocarbon and lipid microbiology , vol.3 , pp. 1865-1880
    • Kim, S.J.1    Kweon, O.2    Cerniglia, C.E.3
  • 17
    • 79952182860 scopus 로고    scopus 로고
    • Genomic view of mycobacterial high molecular weight polycyclic aromatic hydrocarbon degradation
    • Timmis KN (ed), Springer, Braunschweig, Germany.
    • Kweon O, Kim SJ, Cerniglia CE. 2010. Genomic view of mycobacterial high molecular weight polycyclic aromatic hydrocarbon degradation, p 1165-1178. In Timmis KN (ed), Handbook of hydrocarbon and lipid microbiology, vol 2. Springer, Braunschweig, Germany.
    • (2010) Handbook of hydrocarbon and lipid microbiology , vol.2 , pp. 1165-1178
    • Kweon, O.1    Kim, S.J.2    Cerniglia, C.E.3
  • 18
    • 0034110781 scopus 로고    scopus 로고
    • Biodegradation of high-molecular-weight polycyclic aromatic hydrocarbons by bacteria
    • Kanaly RA, Harayama S. 2000. Biodegradation of high-molecular-weight polycyclic aromatic hydrocarbons by bacteria. J. Bacteriol. 182:2059- 2067. http://dx.doi.org/10.1128/JB.182.8.2059-2067.2000.
    • (2000) J. Bacteriol. , vol.182 , pp. 2059
    • Kanaly, R.A.1    Harayama, S.2
  • 19
    • 67649770254 scopus 로고    scopus 로고
    • Biodegradation aspects of polycyclic aromatic hydrocarbons (PAHs): a review
    • Haritash AK, Kaushik CP. 2009. Biodegradation aspects of polycyclic aromatic hydrocarbons (PAHs): a review. J. Hazard. Mater. 169:1-15. http://dx.doi.org/10.1016/j.jhazmat.2009.03.137.
    • (2009) J. Hazard. Mater. , vol.169 , pp. 1
    • Haritash, A.K.1    Kaushik, C.P.2
  • 20
    • 77953548943 scopus 로고    scopus 로고
    • Advances in the field of high-molecularweight polycyclic aromatic hydrocarbon biodegradation by bacteria
    • Kanaly RA, Harayama S. 2010. Advances in the field of high-molecularweight polycyclic aromatic hydrocarbon biodegradation by bacteria. Microb. Biotechnol. 3:136-164. http://dx.doi.org/10.1111/j.1751-7915.2009 .00130.x.
    • (2010) Microb. Biotechnol. , vol.3 , pp. 136
    • Kanaly, R.A.1    Harayama, S.2
  • 21
    • 78650064329 scopus 로고    scopus 로고
    • Metabolic networks, microbial ecology and 'omics' technologies: towards understanding in situ biodegradation processes
    • Vilchez-Vargas R, Junca H, Pieper DH. 2010. Metabolic networks, microbial ecology and 'omics' technologies: towards understanding in situ biodegradation processes. Environ. Microbiol. 12:3089-3104. http://dx .doi.org/10.1111/j.1462-2920.2010.02340.x.
    • (2010) Environ. Microbiol. , vol.12 , pp. 3089
    • Vilchez-Vargas, R.1    Junca, H.2    Pieper, D.H.3
  • 22
    • 79953872599 scopus 로고    scopus 로고
    • Comparative protein and metabolite profiling revealed a metabolic network in response to multiple environmental contaminants in Mycobacterium aromativorans JS19b1(T)
    • Seo JS, Keum YS, Li QX. 2011. Comparative protein and metabolite profiling revealed a metabolic network in response to multiple environmental contaminants in Mycobacterium aromativorans JS19b1(T). J. Agric. Food Chem. 59:2876-2882. http://dx.doi.org/10.1021/jf103018s.
    • (2011) J. Agric. Food Chem. , vol.59 , pp. 2876
    • Seo, J.S.1    Keum, Y.S.2    Li, Q.X.3
  • 24
    • 10644256477 scopus 로고    scopus 로고
    • Identification of proteins induced by polycyclic aromatic hydrocarbon in Mycobacterium vanbaalenii PYR-1 using two-dimensional polyacrylamide gel electrophoresis and de novo sequencing methods
    • Kim SJ, Jones RC, Cha CJ, Kweon O, Edmondson RD, Cerniglia CE. 2004. Identification of proteins induced by polycyclic aromatic hydrocarbon in Mycobacterium vanbaalenii PYR-1 using two-dimensional polyacrylamide gel electrophoresis and de novo sequencing methods. Proteomics 4:3899-3908. http://dx.doi.org/10.1002/pmic.200400872.
    • (2004) Proteomics , vol.4 , pp. 3899
    • Kim, S.J.1    Jones, R.C.2    Cha, C.J.3    Kweon, O.4    Edmondson, R.D.5    Cerniglia, C.E.6
  • 25
    • 84861173121 scopus 로고    scopus 로고
    • Functional robustness of a polycyclic aromatic hydrocarbon metabolic network examined in a nidA aromatic ring hydroxylating oxygenase mutant of Mycobacterium vanbaalenii PYR-1
    • Kim SJ, Song J, Kweon O, Holland RD, Kim DW, Kim JN, Yu LR, Cerniglia CE. 2012. Functional robustness of a polycyclic aromatic hydrocarbon metabolic network examined in a nidA aromatic ring hydroxylating oxygenase mutant of Mycobacterium vanbaalenii PYR-1. Appl. Environ. Microbiol. 78:3715-3723. http://dx.doi.org/10.1128 /AEM.07798-11.
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 3715
    • Kim, S.J.1    Song, J.2    Kweon, O.3    Holland, R.D.4    Kim, D.W.5    Kim, J.N.6    Yu, L.R.7    Cerniglia, C.E.8
  • 26
    • 33847168352 scopus 로고
    • Biodegradation of polycyclic aromatic hydrocarbons
    • Cerniglia CE. 1992. Biodegradation of polycyclic aromatic hydrocarbons. Biodegradation 3:351-368. http://dx.doi.org/10.1007/BF00129093.
    • (1992) Biodegradation , vol.3 , pp. 351
    • Cerniglia, C.E.1
  • 27
    • 13644253074 scopus 로고    scopus 로고
    • Evidence for the existence of PAH-quinone reductase and catechol-Omethyltransferase in Mycobacterium vanbaalenii PYR-1
    • Kim YH, Moody JD, Freeman JP, Engesser KH, Cerniglia CE. 2004. Evidence for the existence of PAH-quinone reductase and catechol-Omethyltransferase in Mycobacterium vanbaalenii PYR-1. J. Ind. Microbiol. Biotechnol. 31:507-516. http://dx.doi.org/10.1007/s10295-004-0178-x.
    • (2004) J. Ind. Microbiol. Biotechnol. , vol.31 , pp. 507
    • Kim, Y.H.1    Moody, J.D.2    Freeman, J.P.3    Engesser, K.H.4    Cerniglia, C.E.5
  • 28
    • 52749087095 scopus 로고    scopus 로고
    • Genomic analysis of polycyclic aromatic hydrocarbon degradation in Mycobacterium vanbaalenii PYR-1
    • Kim SJ, Kweon O, Jones RC, Edmondson RD, Cerniglia CE. 2008. Genomic analysis of polycyclic aromatic hydrocarbon degradation in Mycobacterium vanbaalenii PYR-1. Biodegradation 19:859-881. http://dx .doi.org/10.1007/s10532-008-9189-z.
    • (2008) Biodegradation , vol.19 , pp. 859
    • Kim, S.J.1    Kweon, O.2    Jones, R.C.3    Edmondson, R.D.4    Cerniglia, C.E.5
  • 29
    • 0035432965 scopus 로고    scopus 로고
    • Molecular cloning, nucleotide sequence, and expression of genes encoding a polycyclic aromatic ring dioxygenase from Mycobacterium sp. strain PYR-1
    • Khan AA, Wang RF, Cao WW, Doerge DR, Wennerstrom D, Cerniglia CE. 2001. Molecular cloning, nucleotide sequence, and expression of genes encoding a polycyclic aromatic ring dioxygenase from Mycobacterium sp. strain PYR-1. Appl. Environ. Microbiol. 67:3577-3585. http://dx .doi.org/10.1128/AEM.67.8.3577-3585.2001.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 3577
    • Khan, A.A.1    Wang, R.F.2    Cao, W.W.3    Doerge, D.R.4    Wennerstrom, D.5    Cerniglia, C.E.6
  • 30
    • 33144467842 scopus 로고    scopus 로고
    • Molecular cloning and expression of genes encoding a novel dioxygenase involved in low- and high-molecularweight polycyclic aromatic hydrocarbon degradation in Mycobacterium vanbaalenii PYR-1
    • Kim SJ, Kweon O, Freeman JP, Jones RC, Adjei MD, Jhoo JW, Edmondson RD, Cerniglia CE. 2006. Molecular cloning and expression of genes encoding a novel dioxygenase involved in low- and high-molecularweight polycyclic aromatic hydrocarbon degradation in Mycobacterium vanbaalenii PYR-1. Appl. Environ. Microbiol. 72:1045-1054. http://dx .doi.org/10.1128/AEM.72.2.1045-1054.2006.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 1045
    • Kim, S.J.1    Kweon, O.2    Freeman, J.P.3    Jones, R.C.4    Adjei, M.D.5    Jhoo, J.W.6    Edmondson, R.D.7    Cerniglia, C.E.8
  • 31
    • 79952141107 scopus 로고    scopus 로고
    • Substrate specificity and structural characteristics of the novel Rieske nonheme iron aromatic ring-hydroxylating oxygenases NidAB and NidA3B3 from Mycobacterium vanbaalenii PYR-1
    • Kweon O, Kim SJ, Freeman JP, Song J, Baek S, Cerniglia CE. 2010. Substrate specificity and structural characteristics of the novel Rieske nonheme iron aromatic ring-hydroxylating oxygenases NidAB and NidA3B3 from Mycobacterium vanbaalenii PYR-1. mBio 1:e00135-10. http://dx.doi .org/10.1128/mBio.00135-10.
    • (2010) mBio , vol.1 , pp. e00135-e00210
    • Kweon, O.1    Kim, S.J.2    Freeman, J.P.3    Song, J.4    Baek, S.5    Cerniglia, C.E.6
  • 32
    • 43149093388 scopus 로고    scopus 로고
    • A new classification system for bacterial Rieske nonheme iron aromatic ring-hydroxylating oxygenases
    • Kweon O, Kim SJ, Baek S, Chae JC, Adjei MD, Baek DH, Kim YC, Cerniglia CE. 2008. A new classification system for bacterial Rieske nonheme iron aromatic ring-hydroxylating oxygenases. BMC Biochem. 9:11. http://dx.doi.org/10.1186/1471-2091-9-11.
    • (2008) BMC Biochem. , vol.9 , pp. 11
    • Kweon, O.1    Kim, S.J.2    Baek, S.3    Chae, J.C.4    Adjei, M.D.5    Baek, D.H.6    Kim, Y.C.7    Cerniglia, C.E.8
  • 33
    • 0037701540 scopus 로고    scopus 로고
    • Identification of pyrene-induced proteins in Mycobacterium s. strain 6PY1: evidence for two ring-hydroxylating dioxygenases
    • Krivobok S, Kuony S, Meyer C, Louwagie M, Willison JC, Jouanneau Y. 2003. Identification of pyrene-induced proteins in Mycobacterium sp. strain 6PY1: evidence for two ring-hydroxylating dioxygenases. J. Bacteriol. 185:3828-3841. http://dx.doi.org/10.1128/JB.185.13.3828-3841 .2003.
    • (2003) J. Bacteriol. , vol.185 , pp. 3828
    • Krivobok, S.1    Kuony, S.2    Meyer, C.3    Louwagie, M.4    Willison, J.C.5    Jouanneau, Y.6
  • 35
    • 0020054928 scopus 로고
    • Rapid screen for bacteria degrading water-insoluble, solid hydrocarbons on agar plates
    • Kiyohara H, Nagao K, Yana K. 1982. Rapid screen for bacteria degrading water-insoluble, solid hydrocarbons on agar plates. Appl. Environ. Microbiol. 43:454-457.
    • (1982) Appl. Environ. Microbiol. , vol.43 , pp. 454-457
    • Kiyohara, H.1    Nagao, K.2    Yana, K.3
  • 36
    • 32144432437 scopus 로고    scopus 로고
    • The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling
    • Arnold K, Bordoli L, Kopp J, Schwede T. 2006. The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22:195-201. http://dx.doi.org/10.1093 /bioinformatics/bti770.
    • (2006) Bioinformatics , vol.22 , pp. 195
    • Arnold, K.1    Bordoli, L.2    Kopp, J.3    Schwede, T.4
  • 37
    • 27144495787 scopus 로고    scopus 로고
    • Structure and increased thermostability of Rhodococcus sp naphthalene 1,2-dioxygenase
    • Gakhar L, Malik ZA, Allen CCR, Lipscomb DA, Larkin MJ, Ramaswamy S. 2005. Structure and increased thermostability of Rhodococcus sp naphthalene 1,2-dioxygenase. J. Bacteriol. 187:7222-7231. http://dx.doi .org/10.1128/JB.187.21.7222-7231.2005.
    • (2005) J. Bacteriol. , vol.187 , pp. 7222
    • Gakhar, L.1    Malik, Z.A.2    Allen, C.C.R.3    Lipscomb, D.A.4    Larkin, M.J.5    Ramaswamy, S.6
  • 38
    • 0035812694 scopus 로고    scopus 로고
    • Protein structure prediction and structural genomics
    • Baker D, Sali A. 2001. Protein structure prediction and structural genomics. Science 294:93-96. http://dx.doi.org/10.1126/science.1065659.
    • (2001) Science , vol.294 , pp. 93
    • Baker, D.1    Sali, A.2
  • 39
    • 33747818007 scopus 로고    scopus 로고
    • CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues
    • Dundas J, Ouyang Z, Tseng J, Binkowski A, Turpaz Y, Liang J. 2006. CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues. Nucleic Acids Res. 34:W116-W118. http://dx.doi.org/10.1093/nar/gkl282.
    • (2006) Nucleic Acids Res. , vol.34 , pp. W116-W118
    • Dundas, J.1    Ouyang, Z.2    Tseng, J.3    Binkowski, A.4    Turpaz, Y.5    Liang, J.6
  • 40
    • 21644476468 scopus 로고    scopus 로고
    • PatchDock and SymmDock: servers for rigid and symmetric docking
    • Schneidman-Duhovny D, Inbar Y, Nussinov R, Wolfson HJ. 2005. PatchDock and SymmDock: servers for rigid and symmetric docking. Nucleic Acids Res. 33:W363-W367. http://dx.doi.org/10.1093/nar/gki481.
    • (2005) Nucleic Acids Res. , vol.33 , pp. W363-W367
    • Schneidman-Duhovny, D.1    Inbar, Y.2    Nussinov, R.3    Wolfson, H.J.4
  • 41
    • 79951520837 scopus 로고    scopus 로고
    • iGEMDOCK: a graphical environment of enhancing GEMDOCK using pharmacological interactions and post-screening analysis
    • Hsu KC, Chen YF, Lin SR, Yang JM. 2011. iGEMDOCK: a graphical environment of enhancing GEMDOCK using pharmacological interactions and post-screening analysis. BMC Bioinformatics 12(Suppl 1):S33. http://dx.doi.org/10.1186/1471-2105-12-S1-S33.
    • (2011) BMC Bioinformatics , vol.12 , pp. S33
    • Hsu, K.C.1    Chen, Y.F.2    Lin, S.R.3    Yang, J.M.4
  • 42
    • 33947304702 scopus 로고    scopus 로고
    • PyMOL: a communications tool for computational models
    • DeLano WL, Lam JW. 2005. PyMOL: a communications tool for computational models. Abstr. Pap. Am. Chem. Soc. 230:U1371-U1372.
    • (2005) Abstr. Pap. Am. Chem. Soc. , vol.230 , pp. U1371-U1372
    • DeLano, W.L.1    Lam, J.W.2
  • 43
    • 0032830878 scopus 로고    scopus 로고
    • Separation and identification of polar degradation products of benzo[a]pyrene with ozone by atmospheric pressure chemical ionization-mass spectrometry after optimized column chromatographic clean-up
    • Letzel T, Rosenberg E, Wissiack R, Grasserbauer M, Niessner R. 1999. Separation and identification of polar degradation products of benzo[a]pyrene with ozone by atmospheric pressure chemical ionization-mass spectrometry after optimized column chromatographic clean-up. J. Chromatogr. A 855:501-514. http://dx.doi.org/10.1016/S0021-9673(99)00716-5.
    • (1999) J. Chromatogr. A , vol.855 , pp. 501
    • Letzel, T.1    Rosenberg, E.2    Wissiack, R.3    Grasserbauer, M.4    Niessner, R.5
  • 45
    • 33845483902 scopus 로고    scopus 로고
    • The catalytic pocket of the ring-hydroxylating dioxygenase from Sphingomonas CHY-1
    • Jakoncic J, Jouanneau Y, Meyer C, Stojanoff V. 2007. The catalytic pocket of the ring-hydroxylating dioxygenase from Sphingomonas CHY-1. Biochem. Biophys. Res. Commun. 352:861-866. http://dx.doi .org/10.1016/j.bbrc.2006.11.117.
    • (2007) Biochem. Biophys. Res. Commun. , vol.352 , pp. 861
    • Jakoncic, J.1    Jouanneau, Y.2    Meyer, C.3    Stojanoff, V.4
  • 46
    • 8744268521 scopus 로고    scopus 로고
    • Identification and functional analysis of two aromatic-ringhydroxylating dioxygenases from a sphingomonas strain that degrades various polycyclic aromatic hydrocarbons
    • Demane`che S, Meyer C, Micoud J, Louwagie M, Willison JC, Jouanneau Y. 2004. Identification and functional analysis of two aromatic-ringhydroxylating dioxygenases from a sphingomonas strain that degrades various polycyclic aromatic hydrocarbons. Appl. Environ. Microbiol. 70: 6714-6725. http://dx.doi.org/10.1128/AEM.70.11.6714-6725.2004.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 6714
    • S.1    Demane2    Meyer, C.4    Micoud, J.5    Louwagie, M.6    Willison, J.C.7    Jouanneau, Y.8
  • 47
    • 4143146355 scopus 로고    scopus 로고
    • Molecular characterization of a phenanthrene degradation pathway in Mycobacterium vanbaalenii PYR-1
    • Stingley RL, Khan AA, Cerniglia CE. 2004. Molecular characterization of a phenanthrene degradation pathway in Mycobacterium vanbaalenii PYR-1. Biochem. Biophys. Res. Commun. 322:133-146. http://dx.doi.org /10.1016/j.bbrc.2004.07.089.
    • (2004) Biochem. Biophys. Res. Commun. , vol.322 , pp. 133
    • Stingley, R.L.1    Khan, A.A.2    Cerniglia, C.E.3
  • 48
    • 0026078883 scopus 로고
    • The metabolism of fluoranthene by a species of Mycobacterium
    • Kelley I, Cerniglia CE. 1991. The metabolism of fluoranthene by a species of Mycobacterium. J. Ind. Microbiol. Biotechnol. 7:19-26. http://dx.doi .org/10.1007/BF01575598.
    • (1991) J. Ind. Microbiol. Biotechnol. , vol.7 , pp. 19
    • Kelley, I.1    Cerniglia, C.E.2
  • 49
    • 17844409365 scopus 로고    scopus 로고
    • Effects of pH on the degradation of phenanthrene and pyrene by Mycobacterium vanbaalenii PYR-1
    • Kim YH, Freeman JP, Moody JD, Engesser KH, Cerniglia CE. 2005. Effects of pH on the degradation of phenanthrene and pyrene by Mycobacterium vanbaalenii PYR-1. Appl. Microbiol. Biotechnol. 67:275-285. http://dx.doi.org/10.1007/s00253-004-1796-y.
    • (2005) Appl. Microbiol. Biotechnol. , vol.67 , pp. 275
    • Kim, Y.H.1    Freeman, J.P.2    Moody, J.D.3    Engesser, K.H.4    Cerniglia, C.E.5
  • 50
    • 0031025405 scopus 로고    scopus 로고
    • New metabolites in the degradation of fluorene by Arthrobacter sp. strain F101.
    • Casellas M, Grifoll M, Bayona JM, Solanas AM. 1997. New metabolites in the degradation of fluorene by Arthrobacter sp. strain F101. Appl. Environ. Microbiol. 63:819-826.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 819-826
    • Casellas, M.1    Grifoll, M.2    Bayona, J.M.3    Solanas, A.M.4
  • 51
    • 0031284266 scopus 로고    scopus 로고
    • Cloning and characterization of the genes involved in the degradation of dibenzofuran by Terrabacter sp. strain DBF63.
    • Kasuga K, Nojiri H, Yamane H, Kodama T, Omori T. 1997. Cloning and characterization of the genes involved in the degradation of dibenzofuran by Terrabacter sp. strain DBF63. J. Ferment. Bioeng. 84:387-399. http://dx .doi.org/10.1016/S0922-338X(97)81997-6.
    • (1997) J. Ferment. Bioeng. , vol.84 , pp. 387
    • Kasuga, K.1    Nojiri, H.2    Yamane, H.3    Kodama, T.4    Omori, T.5
  • 52
    • 0347297128 scopus 로고    scopus 로고
    • Degradation of anthracene by Mycobacterium sp strain LB501T proceeds via a novel pathway, through o-phthalic acid
    • van Herwijnen R, Springael D, Slot P, Govers HAJ, Parsons JR. 2003. Degradation of anthracene by Mycobacterium sp strain LB501T proceeds via a novel pathway, through o-phthalic acid. Appl. Environ. Microbiol. 69:186-190. http://dx.doi.org/10.1128/AEM.69.1.186-190.2003.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 186
    • van Herwijnen, R.1    Springael, D.2    Slot, P.3    Govers, H.A.J.4    Parsons, J.R.5
  • 53
    • 4444337310 scopus 로고    scopus 로고
    • Crystal structure of the terminal oxygenase component of biphenyl dioxygenase derived from Rhodococcus sp strain RHA1
    • Furusawa Y, Nagarajan V, Tanokura M, Masai E, Fukuda M, Senda T. 2004. Crystal structure of the terminal oxygenase component of biphenyl dioxygenase derived from Rhodococcus sp strain RHA1. J. Mol. Biol. 342: 1041-1052. http://dx.doi.org/10.1016/j.jmb.2004.07.062.
    • (2004) J. Mol. Biol. , vol.342 , pp. 1041
    • Furusawa, Y.1    Nagarajan, V.2    Tanokura, M.3    Masai, E.4    Fukuda, M.5    Senda, T.6
  • 54
    • 0347264753 scopus 로고    scopus 로고
    • Crystal structure of naphthalene dioxygenase: side-on binding of dioxygen to iron
    • Karlsson A, Parales JV, Parales RE, Gibson DT, Eklund H, Ramaswamy S. 2003. Crystal structure of naphthalene dioxygenase: side-on binding of dioxygen to iron. Science 299:1039-1042. http://dx.doi.org/10.1126 /science.1078020.
    • (2003) Science , vol.299 , pp. 1039
    • Karlsson, A.1    Parales, J.V.2    Parales, R.E.3    Gibson, D.T.4    Eklund, H.5    Ramaswamy, S.6
  • 55
    • 0030513196 scopus 로고    scopus 로고
    • Diverse reactions catalyzed by naphthalene dioxygenase from Pseudomonas sp strain NCIB 9816
    • Resnick SM, Lee K, Gibson DT. 1996. Diverse reactions catalyzed by naphthalene dioxygenase from Pseudomonas sp strain NCIB 9816. J. Ind. Microbiol. Biotechnol. 17:438-457. http://dx.doi.org/10.1007 /BF01574775.
    • (1996) J. Ind. Microbiol. Biotechnol. , vol.17 , pp. 438
    • Resnick, S.M.1    Lee, K.2    Gibson, D.T.3

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