Action-FRET: Probing the molecular conformation of mass-selected gas-phase peptides with förster resonance energy transfer detected by acceptor-specific fragmentation

Analytical Chemistry

Volumn 86, Issue 17, 2014, Pages 8798-8804

  Daly, Steven ^a,b   Poussigue, Frédéric ^a,b   Simon, Anne Laure ^a,b   Macaleese, Luke ^a,b   Bertorelle, Franck ^a,b   Chirot, Fabien ^a,b   Antoine, Rodolphe ^a,b   Dugourd, Philippe ^a,b  

^a UNIVERSITÉ DE LYON   (France)

^b UNIVERSITÉ LYON 1   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BIOMOLECULES; CONFORMATIONS; ENERGY TRANSFER; FLUORESCENCE; MASS SPECTROMETRY; PEPTIDES; PROBES;

ALANINE-BASED PEPTIDE; BIOLOGICAL MOLECULE; ELECTRONIC EXCITATION; FLUORESCENCE MEASUREMENTS; ION MOBILITY SPECTROMETRY; MOLECULAR CONFORMATION; RESONANCE ENERGY TRANSFER; STRUCTURAL SENSITIVITY;

CHROMOPHORES;

GASES; PEPTIDES; POLYALANINE; RHODAMINES;

CHEMISTRY; FLUORESCENCE RESONANCE ENERGY TRANSFER; GASES; MONTE CARLO METHOD; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION;

FLUORESCENCE RESONANCE ENERGY TRANSFER; GASES; MONTE CARLO METHOD; PEPTIDES; RHODAMINES; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION;

EID: 84906849727     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac502027y     Document Type: Article

References (49)

1. Weiss, S. Science 1999, 283, 1676
2. Selvin, P. R. Nat. Struct. Biol. 2000, 7, 730
3. Schuler, B.; Lipman, E. A.; Eaton, W. A. Nature 2002, 419, 743
4. Giepmans, B. N. G.; Adams, S. R.; Ellisman, M. H.; Tsien, R. Y. Science 2006, 312, 217
5. Ruotolo, B. T.; Robinson, C. V. Curr. Opin. Chem. Biol. 2006, 10, 402
6. van den Heuvel, R. H.; Heck, A. J. R. Curr. Opin. Chem. Biol. 2004, 8, 519
7. Miranker, A.; Robinson, C. V.; Radford, S. E.; Aplin, R. T.; Dobson, C. M. Science 1993, 262, 896
8. Heck, A. J. R. Nat. Methods 2008, 5, 927
9. Vonhelden, G.; Wyttenbach, T.; Bowers, M. T. Science 1995, 267, 1483
10. Sinz, A. Mass Spectrom. Rev. 2006, 25, 663
11. Konermann, L.; Pan, J. X.; Liu, Y. H. Chem. Soc. Rev. 2011, 40, 1224
12. Breuker, K.; Oh, H. B.; Horn, D. M.; Cerda, B. A.; McLafferty, F. W. J. Am. Chem. Soc. 2002, 124, 6407
13. Bleiholder, C.; Dupuis, N. F.; Wyttenbach, T.; Bowers, M. T. Nat. Chem. 2011, 3, 172
14. Bush, M. F.; Hall, Z.; Giles, K.; Hoyes, J.; Robinson, C. V.; Ruotolo, B. T. Anal. Chem. 2010, 82, 9557
15. Uetrecht, C.; Rose, R. J.; van Duijn, E.; Lorenzen, K.; Heck, A. J. R. Chem. Soc. Rev. 2010, 39, 1633
16. Danell, A. S.; Parks, J. H. Int. J. Mass Spectrom. 2003, 229, 35
17. Dashtiev, M.; Azov, V.; Frankevich, V.; Scharfenberg, L.; Zenobi, R. J. Am. Soc. Mass Spectrom. 2005, 16, 1481
18. Talbot, F. O.; Rullo, A.; Yao, H.; Jockusch, R. A. J. Am. Chem. Soc. 2010, 132, 16156
19. Frankevich, V.; Guan, X. W.; Dashtiev, M.; Zenobi, R. Eur. J. Mass Spectrom. 2005, 11, 475
20. Iavarone, A. T.; Meinen, J.; Schulze, S.; Parks, J. H. Int. J. Mass Spectrom. 2006, 253, 172
21. Iavarone, A. T.; Patriksson, A.; van der Spoel, D.; Parks, J. H. J. Am. Chem. Soc. 2007, 129, 6726
22. Shi, X. G.; Duft, D.; Parks, J. H. J. Phys. Chem. B 2008, 112, 12801
23. Frankevich, V.; Chagovets, V.; Widjaja, F.; Barylyuk, K.; Yang, Z. Y.; Zenobi, R. Phys. Chem. Chem. Phys. 2014, 16, 8911
24. Bowers, W. D.; Delbert, S. S.; Hunter, R. L.; McIver, R. T. J. Am. Chem. Soc. 1984, 106, 7288
25. Vanderhart, W. J. Mass Spectrom. Rev. 1989, 8, 237
26. Dunbar, R. C. Int. J. Mass Spectrom. 2000, 200, 571
27. Brodbelt, J. S. Chem. Soc. Rev. 2014, 43, 2757
28. MacAleese, L.; Maitre, P. Mass Spectrom. Rev. 2007, 26, 583
29. Drayss, M. K.; Blunk, D.; Oomens, J.; Polfer, N.; Schmuck, C.; Gao, B.; Wyttenbach, T.; Bowers, M. T.; Schafer, M. Int. J. Mass Spectrom. 2009, 281, 97
30. Case, A. S.; Heid, C. G.; Western, C. M.; Crim, F. F. J. Chem. Phys. 2012, 136, 8
31. Crampton, K. T.; Rathur, A. I.; Nei, Y. W.; Berden, G.; Oomens, J.; Rodgers, M. T. J. Am. Soc. Mass Spectrom. 2012, 23, 1469
32. Wyer, J. A.; Jensen, C. S.; Nielsen, S. B. Int. J. Mass Spectrom. 2011, 308, 126
33. Yao, H.; Jockusch, R. A. J. Phys. Chem. A 2013, 117, 1351
34. Klaerke, B.; Holm, A. I. S.; Andersen, L. H. Astron. Astrophys. 2011, 532, 5
35. Hansen, C. S.; Kirk, B. B.; Blanksby, S. J.; O'Hair, R. A. J.; Trevitt, A. J. J. Am. Soc. Mass Spectrom. 2013, 24, 932
36. Kirk, B. B.; Trevitt, A. J.; Blanksby, S. J.; Tao, Y. Q.; Moore, B. N.; Julian, R. R. J. Phys. Chem. A 2013, 117, 1228
37. Macaleese, L.; Chirot, F.; Bazus, L.; Bertorelle, F.; Antione, R.; Lemoine, J.; Dugourd, P. Presented at the 60th ASMS Conference on Mass Spetrometry and Allied Topics, Vancouver, BC, Canada, May 20-24, 2012.
38. Enjalbert, Q.; Girod, M.; Simon, R.; Jeudy, J.; Chirot, F.; Salvador, A.; Antoine, R.; Dugourd, P.; Lemoine, J. J. Anal. Bioanal. Chem. 2013, 405, 2321
39. Forbes, M. W.; Jockusch, R. A. J. Am. Soc. Mass Spectrom. 2011, 22, 93
40. Larraillet, V.; Antoine, R.; Dugourd, P.; Lemoine, J. Anal. Chem. 2009, 81, 8410
41. Albrieux, F.; Calvo, F.; Chirot, F.; Vorobyev, A.; Tsybin, Y. O.; Lepere, V.; Antoine, R.; Lemoine, J.; Dugourd, P. J. Phys. Chem. A 2010, 114, 6888
42. TINKER Molecular Modeling Web site. http://dasher.wustl.edu/tinker.
43. Halgren, T. A. J. Comput. Chem. 1996, 17, 490
44. Mesleh, M. F.; Hunter, J. M.; Shvartsburg, A. A.; Schatz, G. C.; Jarrold, M. F. J. Phys. Chem. 1996, 100, 16082
45. Arbeloa, F. L.; Arbeloa, T. L.; Lage, E. G.; Arbeloa, I. L.; Deschryver, F. C. J. Photochem. Photobiol., A 1991, 56, 313
46. McRae, E. G.; Kasha, M. J. Chem. Phys. 1958, 28, 721
47. Nagy, A. M.; Talbot, F. O.; Czar, M. F.; Jockusch, R. A. J. Photochem. Photobiol., A 2012, 244, 47
48. Hudgins, R. R.; Jarrold, M. F. J. Am. Chem. Soc. 1999, 121, 3494
49. Counterman, A. E.; Clemmer, D. E. J. Phys. Chem. B 2003, 107, 2111