Fluorescence resonance energy transfer of gas-phase ions under ultra high vacuum and ambient conditions

Physical Chemistry Chemical Physics

Volumn 16, Issue 19, 2014, Pages 8911-8920

  Frankevich, Vladimir ^a   Chagovets, Vitaliy ^b   Widjaja, Fanny ^a   Barylyuk, Konstantin ^a   Yang, Zhiyi ^a   Zenobi, Renato ^a  

^a ETH ZURICH   (Switzerland)

^b UNIVERSITY OF PARDUBICE   (Czech Republic)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84898790385     PISSN: 14639076     EISSN: None     Source Type: Journal    
DOI: 10.1039/c3cp54521k     Document Type: Article

References (34)

1. J. R. Lakowicz, Principles of Fluorescence Spectroscopy, Springer, New York, 2006
2. B. Valeur, Molecular Fluorescence: Principles and Applications, Wiley-VCH, Weinheim, 2002, vol. 41, pp. 11-15
3. T. Förster Zwischenmolekulare Energiewanderung und Fluoreszenz Ann. Phys. 1948 437 55 75
4. B. Schuler E. A. Lipman W. A. Eaton Probing the Free-energy Surface for Protein Folding with Single-Molecule Fluorescence Spectroscopy Nature 2002 419 743 747
5. C. A. Royer Probing Protein Folding and Conformational Transitions with Fluorescence Chem. Rev. 2006 106 1769 1784
6. V. Muñoz Conformational Ensembles and Dynamics in Protein Folding Annu. Rev. Biophys. Biomol. Struct. 2007 36 395 412
7. A. S. Danell J. H. Parks FRET measurements of trapped oligonucleotide duplexes Int. J. Mass Spectrom. 2003 229 35 45
8. M. Dashtiev V. Azov V. Frankevich L. Scharfenberg R. Zenobi Observation of Fluorescence Resonance Energy Transfer in Gas-Phase Ions J. Am. Soc. Mass Spectrom. 2005 16 1481 1487
9. A. T. Iavarone A. Patriksson D. van der Spoel J. H. Parks Fluorescence Probe of Trp-Cage Protein Conformation in Solution and in Gas Phase J. Am. Chem. Soc. 2007 129 6726 6735
10. F. O. Talbot A. Rullo H. Yao R. A. Jockusch Fluorescence Resonance Energy Transfer in Gaseous Mass-Selected Polyproline Peptides J. Am. Chem. Soc. 2010 132 16156 16164
11. A. T. Iavarone J. Meinen S. Schulze J. H. Parks Fluorescence Probe of Polypeptide Conformational Dynamics in Gas Phase and in Solution Int. J. Mass Spectrom. 2006 253 172 180
12. S. R. Mercier O. V. Boyarkin A. Kamariotis M. Guglielmi I. Tavernelli M. Cascella U. Rothlisberger T. R. Rizzo Microsolvation Effects on the Excited-state Dynamics of Protonated Tryptophan J. Am. Chem. Soc. 2006 128 16938 16943
13. X. Shi D. Duft J. H. Parks Fluorescence Quenching Induced by Conformational Fluctuations in Unsolvated Polypeptides J. Phys. Chem. B 2008 112 12801 12815
14. Q. Bian M. W. Forbes F. O. Talbot R. A. Jockusch Gas-phase Fluorescence Excitation and Emission Spectroscopy of Mass-Selected Trapped Molecular Ions Phys. Chem. Chem. Phys. 2010 12 2590 2598
15. K. Chingin R. M. Balabin K. Barylyuk H. Chen V. Frankevich R. Zenobi Rhodamines in the Gas Phase: Cations, Neutrals, Anions, and Adducts with Metal Cations Phys. Chem. Chem. Phys. 2010 12 11710 11714
16. K. Chingin R. M. Balabin V. Frankevich H. Chen K. Barylyuk R. Nieckarz A. Fedorov R. Zenobi Optical Properties of Protonated Rhodamine 19 Isomers in Solution and in the Gas Phase Phys. Chem. Chem. Phys. 2010 12 14121 14127
17. K. Chingin V. Frankevich R. M. Balabin K. Barylyuk H. Chen R. Wang R. Zenobi Direct Access to Isolated Biomolecules at Ambient Conditions Angew. Chem. 2010 122 2408 2411 Angew. Chem., Int. Ed. 2010 49 2358 2361
18. K. Chingin H. Chen G. Gamez R. Zenobi Exploring Fluorescence and Fragmentation of Ions Produced by Electrospray Ionization in Ultrahigh Vacuum J. Am. Soc. Mass Spectrom. 2009 20 1731 1738
19. J. C. Phillips R. Braun W. Wang J. Gumbart E. Tajkhorshid E. Villa C. Chipot R. D. Skeel L. Kalé K. Schulten Scalable Molecular Dynamics with NAMD J. Comput. Chem. 2005 26 1781 1802
20. A. D. MacKerell D. Bashford M. Bellott R. L. Dunbrack J. D. Evanseck M. J. Field S. Fischer J. Gao H. Guo S. Ha D. Joseph-McCarthy L. Kuchnir K. Kuczera F. T. K. Lau C. Mattos S. Michnick T. Ngo D. T. Nguyen B. Prodhom W. E. Reiher B. Roux M. Schlenkrich J. C. Smith R. Stote J. Straub M. Watanabe J. Wiórkiewicz-Kuczera D. Yin M. Karplus All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins J. Phys. Chem. B 1998 102 3586 3616
21. K. Vanommeslaeghe E. Hatcher C. Acharya S. Kundu S. Zhong J. Shim E. Darian O. Guvench P. Lopes I. Vorobyov A. D. Mackerell CHARMM general force field: A force field for drug-like molecules compatible with the CHARMM all-atom additive biological force fields J. Comput. Chem. 2010 31 671 690
22. K. C. Song P. W. Livanec J. B. Klauda K. Kuczera R. C. Dunn W. Im Orientation of Fluorescent Lipid Analog BODIPY-PC to Probe Lipid Membrane Properties: Insights from Molecular Dynamics Simulations J. Phys. Chem. B 2011 115 6157 6165
23. A. C. Vaiana A. Schulz J. Wolfrum M. Sauer J. C. Smith Molecular mechanics force field parameterization of the fluorescent probe rhodamine 6G using automated frequency matching J. Comput. Chem. 2003 24 632 639
24. J.-Y. Yi J. Bernholc P. Salamon Simulated annealing strategies for molecular dynamics Comput. Phys. Commun. 1991 66 177 180
25. W. Humphrey A. Dalke K. Schulten VMD: Visual molecular dynamics J. Mol. Graphics 1996 14 33 38
26. M. W. Forbes R. A. Jockusch Gas-Phase Fluorescence Excitation and Emission Spectroscopy of Three Xanthene Dyes (Rhodamine 575, Rhodamine 590 and Rhodamine 6G) in a Quadrupole Ion Trap Mass Spectrometer J. Am. Soc. Mass Spectrom. 2011 22 93 109
27. L. Cavallo M. H. Moore J. E. T. Corrie F. Fraternali Quantum mechanics calculations on rhodamine dyes require inclusion of solvent water for accurate representation of the structure J. Phys. Chem. A 2004 108 7744 7751
28. R. Vos Y. Engelborghs A fluorescence study of tryptophan-histidine interactions in the peptide anantin and in solution Photochem. Photobiol. 1994 60 24 32
29. F. D. Lewis T. Wu Y. Zhang R. L. Letsinger S. R. Greenfield M. R. Wasielewski Distance-dependent electron transfer in DNA hairpins Science 1997 277 673 676
30. M. Sauer K. H. Drexhage U. Lieberwirth R. Muller S. Nord C. Zander Dynamics of the electron transfer reaction between an oxazine dye and DNA oligonucleotides monitored on the single-molecule level Chem. Phys. Lett. 1998 284 153 163
31. S. Nad H. Pal Electron transfer from aromatic amines to excited coumarin dyes: fluorescence quenching and picosecond transient absorption studies J. Phys. Chem. A 2000 104 673 680
32. N. S. Hush M. N. Paddon-Row E. Cotsaris H. Oevering J. W. Verhoeven M. Heppener Distance dependence of photoinduced electron transfer through non-conjugated bridges Chem. Phys. Lett. 1985 117 8 11
33. J. R. Winkler FRETing over the spectroscopy ruler Science 2013 339 1530 1531
34. C. Consani G. Aubock F. van Mourick M. Chergui Ultrafast tryptophan-to-heme electron transfer in myglobins revealed by UV 2D Spectroscopy Science 2013 339 1586 1589