-
1
-
-
75949108783
-
Large-scale reverse genetics in Arabidopsis: Case studies from the Chloroplast 2010 Project
-
Ajjawi, I., Lu, Y., Savage, L.J., Bell, S.M., and, Last, R.L., (2010) Large-scale reverse genetics in Arabidopsis: case studies from the Chloroplast 2010 Project. Plant Physiol. 152, 529-540.
-
(2010)
Plant Physiol.
, vol.152
, pp. 529-540
-
-
Ajjawi, I.1
Lu, Y.2
Savage, L.J.3
Bell, S.M.4
Last, R.L.5
-
2
-
-
33745352101
-
Moving forward in reverse: Genetic technologies to enable genome-wide phenomic screens in Arabidopsis
-
DOI 10.1038/nrg1893, PII N1893
-
Alonso, J.M., and, Ecker, J.R., (2006) Moving forward in reverse: genetic technologies to enable genome-wide phenomic screens in Arabidopsis. Nat. Rev. Genet. 7, 524-536. (Pubitemid 43943570)
-
(2006)
Nature Reviews Genetics
, vol.7
, Issue.7
, pp. 524-536
-
-
Alonso, J.M.1
Ecker, J.R.2
-
3
-
-
0042768158
-
Genome-wide insertional mutagenesis of Arabidopsis thaliana
-
DOI 10.1126/science.1086391
-
Alonso, J.M., Stepanova, A.N., Leisse, T.J., et al. (2003) Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science, 301, 653-657. (Pubitemid 36927950)
-
(2003)
Science
, vol.301
, Issue.5633
, pp. 653-657
-
-
Alonso, J.M.1
Stepanova, A.N.2
Leisse, T.J.3
Kim, C.J.4
Chen, H.5
Shinn, P.6
Stevenson, D.K.7
Zimmerman, J.8
Barajas, P.9
Cheuk, R.10
Gadrinab, C.11
Heller, C.12
Jeske, A.13
Koesema, E.14
Meyers, C.C.15
Parker, H.16
Prednis, L.17
Ansari, Y.18
Choy, N.19
Deen, H.20
Geralt, M.21
Hazari, N.22
Hom, E.23
Karnes, M.24
Mulholland, C.25
Ndubaku, R.26
Schmidt, I.27
Guzman, P.28
Aguilar-Henonin, L.29
Schmid, M.30
Weigel, D.31
Carter, D.E.32
Marchand, T.33
Risseeuw, E.34
Brogden, D.35
Zeko, A.36
Crosby, W.L.37
Berry, C.C.38
Ecker, J.R.39
more..
-
4
-
-
0035937462
-
Regulation of vegetative phase change in arabidopsis thaliana by cyclophilin 40
-
DOI 10.1126/science.1057144
-
Berardini, T.Z., Bollman, K., Sun, H., and, Poethig, R.S., (2001) Regulation of vegetative phase change in Arabidopsis thaliana by cyclophilin 40. Science, 291, 2405-2407. (Pubitemid 32231801)
-
(2001)
Science
, vol.291
, Issue.5512
, pp. 2405-2407
-
-
Berardini, T.Z.1
Bollman, K.2
Sun, H.3
Scott Poethig, R.4
-
5
-
-
0033017517
-
A mutational analysis of leaf morphogenesis in Arabidopsis thaliana
-
Berná, G., Robles, P., and, Micol, J.L., (1999) A mutational analysis of leaf morphogenesis in Arabidopsis thaliana. Genetics, 152, 729-742. (Pubitemid 29272723)
-
(1999)
Genetics
, vol.152
, Issue.2
, pp. 729-742
-
-
Berna, G.1
Robles, P.2
Micol, J.L.3
-
6
-
-
33748792021
-
Bio-ontologies: Current trends and future directions
-
DOI 10.1093/bib/bbl027
-
Bodenreider, O., and, Stevens, R., (2006) Bio-ontologies: current trends and future directions. Brief. Bioinform. 7, 256-274. (Pubitemid 44404875)
-
(2006)
Briefings in Bioinformatics
, vol.7
, Issue.3
, pp. 256-274
-
-
Bodenreider, O.1
Stevens, R.2
-
7
-
-
84879200642
-
GABI-DUPLO: A collection of double mutants to overcome genetic redundancy in Arabidopsis thaliana
-
Bolle, C., Huep, G., Kleinbolting, N., Haberer, G., Mayer, K., Leister, D., and, Weisshaar, B., (2013) GABI-DUPLO: a collection of double mutants to overcome genetic redundancy in Arabidopsis thaliana. Plant J. 75, 157-171.
-
(2013)
Plant J.
, vol.75
, pp. 157-171
-
-
Bolle, C.1
Huep, G.2
Kleinbolting, N.3
Haberer, G.4
Mayer, K.5
Leister, D.6
Weisshaar, B.7
-
8
-
-
0346728473
-
Systematic genome-wide screens of gene function
-
DOI 10.1038/nrg1248
-
Carpenter, A.E., and, Sabatini, D.M., (2004) Systematic genome-wide screens of gene function. Nat. Rev. Genet. 5, 11-22. (Pubitemid 38055332)
-
(2004)
Nature Reviews Genetics
, vol.5
, Issue.1
, pp. 11-22
-
-
Carpenter, A.E.1
Sabatini, D.M.2
-
9
-
-
84894343968
-
Combined haploinsufficiency and purifying selection drive retention of RPL36a paralogs in Arabidopsis
-
Casanova-Sáez, R., Candela, H., and, Micol, J.L., (2014) Combined haploinsufficiency and purifying selection drive retention of RPL36a paralogs in Arabidopsis. Sci. Rep. 4, 4122.
-
(2014)
Sci. Rep.
, vol.4
, pp. 4122
-
-
Casanova-Sáez, R.1
Candela, H.2
Micol, J.L.3
-
10
-
-
20444466570
-
Proteomic characterization of evolutionarily conserved and variable proteins of arabidopsis cytosolic ribosomes
-
DOI 10.1104/pp.104.053637
-
Chang, I.F., Szick-Miranda, K., Pan, S., and, Bailey-Serres, J., (2005) Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Plant Physiol. 137, 848-862. (Pubitemid 43138157)
-
(2005)
Plant Physiology
, vol.137
, Issue.3
, pp. 848-862
-
-
Chang, I.-F.1
Szick-Miranda, K.2
Pan, S.3
Bailey-Serres, J.4
-
11
-
-
13844286019
-
EGY1 encodes a membrane-associated and ATP-independent metalloprotease that is required for chloroplast development
-
DOI 10.1111/j.1365-313X.2004.02308.x
-
Chen, G., Bi, Y.R., and, Li, N., (2005) EGY1 encodes a membrane-associated and ATP-independent metalloprotease that is required for chloroplast development. Plant J. 41, 364-375. (Pubitemid 40252756)
-
(2005)
Plant Journal
, vol.41
, Issue.3
, pp. 364-375
-
-
Chen, G.1
Bi, Y.R.2
Li, N.3
-
12
-
-
78650140235
-
Chromosomal translocations are a common phenomenon in Arabidopsis thaliana T-DNA insertion lines
-
Clark, K.A., and, Krysan, P.J., (2010) Chromosomal translocations are a common phenomenon in Arabidopsis thaliana T-DNA insertion lines. Plant J. 64, 990-1001.
-
(2010)
Plant J.
, vol.64
, pp. 990-1001
-
-
Clark, K.A.1
Krysan, P.J.2
-
13
-
-
0032076005
-
Arabidopsis gls mutants and distinct Fd-GOGAT genes: Implications for photorespiration and primary nitrogen assimilation
-
DOI 10.1105/tpc.10.5.741
-
Coschigano, K.T., Melo-Oliveira, R., Lim, J., and, Coruzzi, G.M., (1998) Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation. Plant Cell, 10, 741-752. (Pubitemid 28542182)
-
(1998)
Plant Cell
, vol.10
, Issue.5
, pp. 741-752
-
-
Coschigano, K.T.1
Melo-Oliveira, R.2
Lim, J.3
Coruzzi, G.M.4
-
14
-
-
70349671209
-
A high throughput genetic screen identifies new early meiotic recombination functions in Arabidopsis thaliana
-
et al.
-
De Muyt, A., Pereira, L., Vezon, D., et al. (2009) A high throughput genetic screen identifies new early meiotic recombination functions in Arabidopsis thaliana. PLoS Genet. 5, e1000654.
-
(2009)
PLoS Genet.
, vol.5
-
-
De Muyt, A.1
Pereira, L.2
Vezon, D.3
-
15
-
-
80053605850
-
A large-scale genetic screen in Arabidopsis to identify genes involved in pollen exine production
-
et al.
-
Dobritsa, A.A., Geanconteri, A., Shrestha, J., et al. (2011) A large-scale genetic screen in Arabidopsis to identify genes involved in pollen exine production. Plant Physiol. 157, 947-970.
-
(2011)
Plant Physiol.
, vol.157
, pp. 947-970
-
-
Dobritsa, A.A.1
Geanconteri, A.2
Shrestha, J.3
-
16
-
-
0002724395
-
T-DNA insertion mutagenesis in Arabidopsis: Mutational spectrum
-
Feldmann, K.A., (1991) T-DNA insertion mutagenesis in Arabidopsis: mutational spectrum. Plant J. 1, 71-82. (Pubitemid 121001034)
-
(1991)
Plant Journal
, vol.1
, Issue.1
, pp. 71-82
-
-
Feldmann, K.A.1
-
17
-
-
0034191224
-
Large-scale T-DNA mutagenesis in Arabidopsis for functional genomic analysis
-
Galbiati, M., Moreno, M.A., Nadzan, G., Zourelidou, M., and, Dellaporta, S.L., (2000) Large-scale T-DNA mutagenesis in Arabidopsis for functional genomic analysis. Funct. Integr. Genomics 1, 25-34.
-
(2000)
Funct. Integr. Genomics
, vol.1
, pp. 25-34
-
-
Galbiati, M.1
Moreno, M.A.2
Nadzan, G.3
Zourelidou, M.4
Dellaporta, S.L.5
-
18
-
-
0037173615
-
Functional profiling of the Saccharomyces cerevisiae genome
-
DOI 10.1038/nature00935
-
Giaever, G., Chu, A.M., Ni, L., et al. (2002) Functional profiling of the Saccharomyces cerevisiae genome. Nature, 418, 387-391. (Pubitemid 34826834)
-
(2002)
Nature
, vol.418
, Issue.6896
, pp. 387-391
-
-
Giaever, G.1
Chu, A.M.2
Ni, L.3
Connelly, C.4
Riles, L.5
Veronneau, S.6
Dow, S.7
Lucau-Danila, A.8
Anderson, K.9
Andre, B.10
Arkin, A.P.11
Astromoff, A.12
El Bakkoury, M.13
Bangham, R.14
Benito, R.15
Brachat, S.16
Campanaro, S.17
Curtiss, M.18
Davis, K.19
Deutschbauer, A.20
Entian, K.-D.21
Flaherty, P.22
Foury, F.23
Garfinkel, D.J.24
Gerstein, M.25
Gotte, D.26
Guldener, U.27
Hegemann, J.H.28
Hempel, S.29
Herman, Z.30
Jaramillo, D.F.31
Kelly, D.E.32
Kelly, S.L.33
Kotter, P.34
LaBonte, D.35
Lamb, D.C.36
Lan, N.37
Liang, H.38
Liao, H.39
Liu, L.40
Luo, C.41
Lussier, M.42
Mao, R.43
Menard, P.44
Ooi, S.L.45
Revuelta, J.L.46
Roberts, C.J.47
Rose, M.48
Ross-Macdonald, P.49
Scherens, B.50
Schimmack, G.51
Shafer, B.52
Shoemaker, D.D.53
Sookhai-Mahadeo, S.54
Storms, R.K.55
Strathern, J.N.56
Valle, G.57
Voet, M.58
Volckaert, G.59
Wang, C.-Y.60
Ward, T.R.61
Wilhelmy, J.62
Winzeler, E.A.63
Yang, Y.64
Yen, G.65
Youngman, E.66
Yu, K.67
Bussey, H.68
Boeke, J.D.69
Snyder, M.70
Philippsen, P.71
Davis, R.W.72
Johnston, M.73
more..
-
19
-
-
17844367135
-
High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome
-
DOI 10.1007/s11103-005-0699-3
-
Giavalisco, P., Wilson, D., Kreitler, T., Lehrach, H., Klose, J., Gobom, J., and, Fucini, P., (2005) High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Plant Mol. Biol. 57, 577-591. (Pubitemid 40580437)
-
(2005)
Plant Molecular Biology
, vol.57
, Issue.4
, pp. 577-591
-
-
Giavalisco, P.1
Wilson, D.2
Kreitler, T.3
Lehrach, H.4
Klose, J.5
Gobom, J.6
Fucini, P.7
-
20
-
-
77955801615
-
Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
Goecks, J., Nekrutenko, A., and, Taylor, J., (2010) Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol. 11, R86.
-
(2010)
Genome Biol.
, vol.11
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
-
21
-
-
79952038264
-
Differential contributions of ribosomal protein genes to Arabidopsis thaliana leaf development
-
Horiguchi, G., Mollá-Morales, A., Pérez-Pérez, J.M., Kojima, K., Robles, P., Ponce, M.R., Micol, J.L., and, Tsukaya, H., (2011) Differential contributions of ribosomal protein genes to Arabidopsis thaliana leaf development. Plant J. 65, 724-736.
-
(2011)
Plant J.
, vol.65
, pp. 724-736
-
-
Horiguchi, G.1
Mollá-Morales, A.2
Pérez-Pérez, J.M.3
Kojima, K.4
Robles, P.5
Ponce, M.R.6
Micol, J.L.7
Tsukaya, H.8
-
22
-
-
84861073623
-
Ribosomes and translation in plant developmental control
-
Horiguchi, G., Van Lijsebettens, M., Candela, H., Micol, J.L., and, Tsukaya, H., (2012) Ribosomes and translation in plant developmental control. Plant Sci. 191-192, 24-34.
-
(2012)
Plant Sci.
, vol.191-192
, pp. 24-34
-
-
Horiguchi, G.1
Van Lijsebettens, M.2
Candela, H.3
Micol, J.L.4
Tsukaya, H.5
-
23
-
-
25444517586
-
A resource of 5,814 Dissociation transposon-tagged and sequence-indexed lines of Arabidopsis Transposed from start loci on chromosome 5
-
DOI 10.1093/pcp/pci112
-
Ito, T., Motohashi, R., Kuromori, T., Noutoshi, Y., Seki, M., Kamiya, A., Mizukado, S., Sakurai, T., and, Shinozaki, K., (2005) A resource of 5,814 dissociation transposon-tagged and sequence-indexed lines of Arabidopsis transposed from start loci on chromosome 5. Plant Cell Physiol. 46, 1149-1153. (Pubitemid 41373478)
-
(2005)
Plant and Cell Physiology
, vol.46
, Issue.7
, pp. 1149-1153
-
-
Ito, T.1
Motohashi, R.2
Kuromori, T.3
Noutoshi, Y.4
Seki, M.5
Kamiya, A.6
Mizukado, S.7
Sakurai, T.8
Shinozaki, K.9
-
24
-
-
33644751190
-
Plant Ontology (PO): A controlled vocabulary of plant structures and growth stages
-
DOI 10.1002/cfg.496
-
Jaiswal, P., Avraham, S., Ilic, K., et al. (2005) Plant Ontology (PO): a controlled vocabulary of plant structures and growth stages. Comp. Funct. Genomics 6, 388-397. (Pubitemid 43336584)
-
(2005)
Comparative and Functional Genomics
, vol.6
, Issue.7-8
, pp. 388-397
-
-
Jaiswal, P.1
Avraham, S.2
Ilic, K.3
Kellogg, E.A.4
McCouch, S.5
Pujar, A.6
Reiser, L.7
Rhee, S.Y.8
Sachs, M.M.9
Schaeffer, M.10
Stein, L.11
Stevens, P.12
Vincent, L.13
Ware, D.14
Zapata, F.15
-
25
-
-
84924756195
-
Multi-gene silencing in Arabidopsis: A collection of artificial microRNAs targeting groups of paralogs encoding transcription factors
-
in press
-
Jover-Gil, S., Paz-Ares, J., Micol, J.L., and, Ponce, M.R., (2014) Multi-gene silencing in Arabidopsis: a collection of artificial microRNAs targeting groups of paralogs encoding transcription factors. Plant J. in press.
-
(2014)
Plant J.
-
-
Jover-Gil, S.1
Paz-Ares, J.2
Micol, J.L.3
Ponce, M.R.4
-
26
-
-
35348988679
-
Paired-end mapping reveals extensive structural variation in the human genome
-
DOI 10.1126/science.1149504
-
Korbel, J.O., Urban, A.E., Affourtit, J.P., et al. (2007) Paired-end mapping reveals extensive structural variation in the human genome. Science, 318, 420-426. (Pubitemid 47614521)
-
(2007)
Science
, vol.318
, Issue.5849
, pp. 420-426
-
-
Korbel, J.O.1
Urban, A.E.2
Affourtit, J.P.3
Godwin, B.4
Grubert, F.5
Simons, J.F.6
Kim, P.M.7
Palejev, D.8
Carriero, N.J.9
Du, L.10
Taillon, B.E.11
Chen, Z.12
Tanzer, A.13
Saunders, A.C.E.14
Chi, J.15
Yang, F.16
Carter, N.P.17
Hurles, M.E.18
Weissman, S.M.19
Harkins, T.T.20
Gerstein, M.B.21
Egholm, M.22
Snyder, M.23
more..
-
27
-
-
12144289987
-
A collection of 11 800 single-copy Ds transposon insertion lines in Arabidopsis
-
DOI 10.1111/j.1365.313X.2004.02009.x
-
Kuromori, T., Hirayama, T., Kiyosue, Y., Takabe, H., Mizukado, S., Sakurai, T., Akiyama, K., Kamiya, A., Ito, T., and, Shinozaki, K., (2004) A collection of 11,800 single-copy Ds transposon insertion lines in Arabidopsis. Plant J. 37, 897-905. (Pubitemid 38370340)
-
(2004)
Plant Journal
, vol.37
, Issue.6
, pp. 897-905
-
-
Kuromori, T.1
Hirayama, T.2
Kiyosue, Y.3
Takabe, H.4
Mizukado, S.5
Sakurai, T.6
Akiyama, K.7
Kamiya, A.8
Ito, T.9
Shinozaki, K.10
-
28
-
-
33746567801
-
A trial of phenome analysis using 4000 Ds-insertional mutants in gene-coding regions of Arabidopsis
-
DOI 10.1111/j.1365-313X.2006.02808.x
-
Kuromori, T., Wada, T., Kamiya, A., et al. (2006) A trial of phenome analysis using 4000 Ds-insertional mutants in gene-coding regions of Arabidopsis. Plant J. 47, 640-651. (Pubitemid 44141707)
-
(2006)
Plant Journal
, vol.47
, Issue.4
, pp. 640-651
-
-
Kuromori, T.1
Wada, T.2
Kamiya, A.3
Yuguchi, M.4
Yokouchi, T.5
Imura, Y.6
Takabe, H.7
Sakurai, T.8
Akiyama, K.9
Hirayama, T.10
Okada, K.11
Shinozaki, K.12
-
29
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead, B., and, Salzberg, S.L., (2012) Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, 357-359.
-
(2012)
Nat. Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
30
-
-
84881497686
-
Time- and cost-efficient identification of T-DNA insertion sites through targeted genomic sequencing
-
Lepage, E., Zampini, E., Boyle, B., and, Brisson, N., (2013) Time- and cost-efficient identification of T-DNA insertion sites through targeted genomic sequencing. PLoS ONE, 8, e70912.
-
(2013)
PLoS ONE
, vol.8
-
-
Lepage, E.1
Zampini, E.2
Boyle, B.3
Brisson, N.4
-
31
-
-
0014492573
-
Thiamine mutants of the crucifer, Arabidopsis
-
Li, S.L., and, Redei, G.P., (1969) Thiamine mutants of the crucifer, Arabidopsis. Biochem. Genet. 3, 163-170.
-
(1969)
Biochem. Genet.
, vol.3
, pp. 163-170
-
-
Li, S.L.1
Redei, G.P.2
-
32
-
-
84857950845
-
A comprehensive dataset of genes with a loss-of-function mutant phenotype in Arabidopsis
-
Lloyd, J., and, Meinke, D., (2012) A comprehensive dataset of genes with a loss-of-function mutant phenotype in Arabidopsis. Plant Physiol. 158, 1115-1129.
-
(2012)
Plant Physiol.
, vol.158
, pp. 1115-1129
-
-
Lloyd, J.1
Meinke, D.2
-
33
-
-
79953719673
-
Chloroplast 2010: A database for large-scale phenotypic screening of Arabidopsis mutants
-
Lu, Y., Savage, L.J., Larson, M.D., Wilkerson, C.G., and, Last, R.L., (2011) Chloroplast 2010: a database for large-scale phenotypic screening of Arabidopsis mutants. Plant Physiol. 155, 1589-1600.
-
(2011)
Plant Physiol.
, vol.155
, pp. 1589-1600
-
-
Lu, Y.1
Savage, L.J.2
Larson, M.D.3
Wilkerson, C.G.4
Last, R.L.5
-
34
-
-
77949512406
-
Tablet - Next generation sequence assembly visualization
-
Milne, I., Bayer, M., Cardle, L., Shaw, P., Stephen, G., Wright, F., and, Marshall, D., (2010) Tablet-next generation sequence assembly visualization. Bioinformatics, 26, 401-402.
-
(2010)
Bioinformatics
, vol.26
, pp. 401-402
-
-
Milne, I.1
Bayer, M.2
Cardle, L.3
Shaw, P.4
Stephen, G.5
Wright, F.6
Marshall, D.7
-
35
-
-
33745954336
-
DAWDLE, a forkhead-associated domain gene, regulates multiple aspects of plant development
-
DOI 10.1104/pp.106.076893
-
Morris, E.R., Chevalier, D., and, Walker, J.C., (2006) DAWDLE, a forkhead-associated domain gene, regulates multiple aspects of plant development. Plant Physiol. 141, 932-941. (Pubitemid 44061600)
-
(2006)
Plant Physiology
, vol.141
, Issue.3
, pp. 932-941
-
-
Morris, E.R.1
Chevalier, D.2
Walker, J.C.3
-
36
-
-
44349119741
-
A NIMA-related protein kinase suppresses ectopic outgrowth of epidermal cells through its kinase activity and the association with microtubules
-
DOI 10.1111/j.1365-313X.2008.03445.x
-
Motose, H., Tominaga, R., Wada, T., Sugiyama, M., and, Watanabe, Y., (2008) A NIMA-related protein kinase suppresses ectopic outgrowth of epidermal cells through its kinase activity and the association with microtubules. Plant J. 54, 829-844. (Pubitemid 351744776)
-
(2008)
Plant Journal
, vol.54
, Issue.5
, pp. 829-844
-
-
Motose, H.1
Tominaga, R.2
Wada, T.3
Sugiyama, M.4
Watanabe, Y.5
-
37
-
-
75749136937
-
The Chloroplast Function Database: A large-scale collection of Arabidopsis Ds/Spm- or T-DNA-tagged homozygous lines for nuclear-encoded chloroplast proteins, and their systematic phenotype analysis
-
Myouga, F., Akiyama, K., Motohashi, R., Kuromori, T., Ito, T., Iizumi, H., Ryusui, R., Sakurai, T., and, Shinozaki, K., (2010) The Chloroplast Function Database: a large-scale collection of Arabidopsis Ds/Spm- or T-DNA-tagged homozygous lines for nuclear-encoded chloroplast proteins, and their systematic phenotype analysis. Plant J. 61, 529-542.
-
(2010)
Plant J.
, vol.61
, pp. 529-542
-
-
Myouga, F.1
Akiyama, K.2
Motohashi, R.3
Kuromori, T.4
Ito, T.5
Iizumi, H.6
Ryusui, R.7
Sakurai, T.8
Shinozaki, K.9
-
38
-
-
84874240821
-
The Chloroplast Function Database II: A comprehensive collection of homozygous mutants and their phenotypic/genotypic traits for nuclear-encoded chloroplast proteins
-
Myouga, F., Akiyama, K., Tomonaga, Y., Kato, A., Sato, Y., Kobayashi, M., Nagata, N., Sakurai, T., and, Shinozaki, K., (2013) The Chloroplast Function Database II: a comprehensive collection of homozygous mutants and their phenotypic/genotypic traits for nuclear-encoded chloroplast proteins. Plant Cell Physiol. 54, e2.
-
(2013)
Plant Cell Physiol.
, vol.54
-
-
Myouga, F.1
Akiyama, K.2
Tomonaga, Y.3
Kato, A.4
Sato, Y.5
Kobayashi, M.6
Nagata, N.7
Sakurai, T.8
Shinozaki, K.9
-
39
-
-
0035209943
-
Multidrug resistance-like genes of Arabidopsis required for auxin transport and auxin-mediated development
-
DOI 10.1105/tpc.13.11.2441
-
Noh, B., Murphy, A.S., and, Spalding, E.P., (2001) Multidrug resistance-like genes of Arabidopsis required for auxin transport and auxin-mediated development. Plant Cell, 13, 2441-2454. (Pubitemid 33146108)
-
(2001)
Plant Cell
, vol.13
, Issue.11
, pp. 2441-2454
-
-
Noh, B.1
Murphy, A.S.2
Spalding, E.P.3
-
40
-
-
84883362840
-
Using the iPlant collaborative discovery environment
-
Oliver, S.L., Lenards, A.J., Barthelson, R.A., Merchant, N., and, McKay, S.J., (2013) Using the iPlant collaborative discovery environment. Curr. Protoc. Bioinformatics 1, 22.
-
(2013)
Curr. Protoc. Bioinformatics
, vol.1
, pp. 22
-
-
Oliver, S.L.1
Lenards, A.J.2
Barthelson, R.A.3
Merchant, N.4
McKay, S.J.5
-
41
-
-
77950452042
-
Linking genotype to phenotype using the Arabidopsis unimutant collection
-
O'Malley, R.C., and, Ecker, J.R., (2010) Linking genotype to phenotype using the Arabidopsis unimutant collection. Plant J. 61, 928-940.
-
(2010)
Plant J.
, vol.61
, pp. 928-940
-
-
O'Malley, R.C.1
Ecker, J.R.2
-
42
-
-
39149115111
-
An adapter ligation-mediated PCR method for high-throughput mapping of T-DNA inserts in the Arabidopsis genome
-
O'Malley, R.C., Alonso, J.M., Kim, C.J., Leisse, T.J., and, Ecker, J.R., (2007) An adapter ligation-mediated PCR method for high-throughput mapping of T-DNA inserts in the Arabidopsis genome. Nat. Protoc. 2, 2910-2917.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 2910-2917
-
-
O'Malley, R.C.1
Alonso, J.M.2
Kim, C.J.3
Leisse, T.J.4
Ecker, J.R.5
-
43
-
-
84896448861
-
A survey of tools for variant analysis of next-generation genome sequencing data
-
Pabinger, S., Dander, A., Fischer, M., Snajder, R., Sperk, M., Efremova, M., Krabichler, B., Speicher, M.R., Zschocke, J., and, Trajanoski, Z., (2013) A survey of tools for variant analysis of next-generation genome sequencing data. Brief. Bioinform. 5, 256-278.
-
(2013)
Brief. Bioinform.
, vol.5
, pp. 256-278
-
-
Pabinger, S.1
Dander, A.2
Fischer, M.3
Snajder, R.4
Sperk, M.5
Efremova, M.6
Krabichler, B.7
Speicher, M.R.8
Zschocke, J.9
Trajanoski, Z.10
-
44
-
-
0036245276
-
The art and design of genetic screens: Arabidopsis thaliana
-
DOI 10.1038/nrg730
-
Page, D.R., and, Grossniklaus, U., (2002) The art and design of genetic screens: Arabidopsis thaliana. Nat. Rev. Genet. 3, 124-136. (Pubitemid 34506596)
-
(2002)
Nature Reviews Genetics
, vol.3
, Issue.2
, pp. 124-136
-
-
Page, D.R.1
Grossniklaus, U.2
-
45
-
-
0034030591
-
Functional genomics in Arabidopsis: Large-scale insertional mutagenesis complements the genome sequencing project
-
DOI 10.1016/S0958-1669(00)00075-6
-
Parinov, S., and, Sundaresan, V., (2000) Functional genomics in Arabidopsis: large-scale insertional mutagenesis complements the genome sequencing project. Curr. Opin. Biotechnol. 11, 157-161. (Pubitemid 30182309)
-
(2000)
Current Opinion in Biotechnology
, vol.11
, Issue.2
, pp. 157-161
-
-
Parinov, S.1
Sundaresan, V.2
-
46
-
-
80855132593
-
Whole organ, venation and epidermal cell morphological variations are correlated in the leaves of Arabidopsis mutants
-
Pérez-Pérez, J.M., Rubio-Díaz, S., Dhondt, S., Hernández-Romero, D., Sánchez-Soriano, J., Beemster, G.T., Ponce, M.R., and, Micol, J.L., (2011) Whole organ, venation and epidermal cell morphological variations are correlated in the leaves of Arabidopsis mutants. Plant, Cell Environ. 34, 2200-2211.
-
(2011)
Plant, Cell Environ.
, vol.34
, pp. 2200-2211
-
-
Pérez-Pérez, J.M.1
Rubio-Díaz, S.2
Dhondt, S.3
Hernández-Romero, D.4
Sánchez-Soriano, J.5
Beemster, G.T.6
Ponce, M.R.7
Micol, J.L.8
-
47
-
-
84866396896
-
Illumina sequencing technology as a method of identifying T-DNA insertion loci in activation-tagged Arabidopsis thaliana plants
-
Polko, J.K., Temanni, M.R., van Zanten, M., van Workum, W., Iburg, S., Pierik, R., Voesenek, L.A., and, Peeters, A.J., (2012) Illumina sequencing technology as a method of identifying T-DNA insertion loci in activation-tagged Arabidopsis thaliana plants. Mol. Plant 5, 948-950.
-
(2012)
Mol. Plant
, vol.5
, pp. 948-950
-
-
Polko, J.K.1
Temanni, M.R.2
Van Zanten, M.3
Van Workum, W.4
Iburg, S.5
Pierik, R.6
Voesenek, L.A.7
Peeters, A.J.8
-
48
-
-
0032077108
-
Rapid discrimination of sequences flanking and within T-DNA insertions in the Arabidopsis genome
-
DOI 10.1046/j.1365-313X.1998.00146.x
-
Ponce, M.R., Quesada, V., and, Micol, J.L., (1998) Rapid discrimination of sequences flanking and within T-DNA insertions in the Arabidopsis genome. Plant J. 14, 497-501. (Pubitemid 28295403)
-
(1998)
Plant Journal
, vol.14
, Issue.4
, pp. 497-501
-
-
Ponce, M.R.1
Quesada, V.2
Micol, J.L.3
-
49
-
-
84883430386
-
A systematic genetic screen to dissect the microRNA pathway in Drosophila
-
Pressman, S., Reinke, C.A., Wang, X., and, Carthew, R.W., (2012) A systematic genetic screen to dissect the microRNA pathway in Drosophila. G3, 2, 437-448.
-
(2012)
G3
, vol.2
, pp. 437-448
-
-
Pressman, S.1
Reinke, C.A.2
Wang, X.3
Carthew, R.W.4
-
50
-
-
80855132592
-
Arabidopsis RUGOSA2 encodes an mTERF family member required for mitochondrion, chloroplast and leaf development
-
Quesada, V., Sarmiento-Mañús, R., González- Bayõn, R., Hricová, A., Pérez-Marcos, R., Gracía-Martínez, E., Medina-Ruiz, L., Leyva-Díaz, E., Ponce, M.R., and, Micol, J.L., (2011) Arabidopsis RUGOSA2 encodes an mTERF family member required for mitochondrion, chloroplast and leaf development. Plant J. 68, 738-753.
-
(2011)
Plant J.
, vol.68
, pp. 738-753
-
-
Quesada, V.1
Sarmiento-Mañús, R.2
González-Bayõn, R.3
Hricová, A.4
Pérez-Marcos, R.5
Gracía-Martínez, E.6
Medina-Ruiz, L.7
Leyva-Díaz, E.8
Ponce, M.R.9
Micol, J.L.10
-
51
-
-
1642465435
-
An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics
-
DOI 10.1023/B:PLAN.0000009297.37235.4a
-
Rosso, M.G., Li, Y., Strizhov, N., Reiss, B., Dekker, K., and, Weisshaar, B., (2003) An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics. Plant Mol. Biol. 53, 247-259. (Pubitemid 38105653)
-
(2003)
Plant Molecular Biology
, vol.53
, Issue.1-2
, pp. 247-259
-
-
Rosso, M.G.1
Li, Y.2
Strizhov, N.3
Reiss, B.4
Dekker, K.5
Weisshaar, B.6
-
52
-
-
0031975589
-
The TIR1 protein of Arabidopsis functions in auxin response and is related to human SKP2 and yeast Grr1p
-
Ruegger, M., Dewey, E., Gray, W.M., Hobbie, L., Turner, J., and, Estelle, M., (1998) The TIR1 protein of Arabidopsis functions in auxin response and is related to human SKP2 and yeast grr1p. Genes Dev. 12, 198-207. (Pubitemid 28060450)
-
(1998)
Genes and Development
, vol.12
, Issue.2
, pp. 198-207
-
-
Ruegger, M.1
Dewey, E.2
Gray, W.M.3
Hobbie, L.4
Turner, J.5
Estelle, M.6
-
53
-
-
0036081320
-
FLAGdb/FST: A database of mapped flanking insertion sites (FSTs) of Arabidopsis thaliana T-DNA transformants
-
Samson, F., Brunaud, V., Balzergue, S., Dubreucq, B., Lepiniec, L., Pelletier, G., Caboche, M., and, Lecharny, A., (2002) FLAGdb/FST: a database of mapped flanking insertion sites (FSTs) of Arabidopsis thaliana T-DNA transformants. Nucleic Acids Res. 30, 94-97. (Pubitemid 34679514)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.1
, pp. 94-97
-
-
Samson, F.1
Brunaud, V.2
Balzergue, S.3
Dubreucq, B.4
Lepiniec, L.5
Pelletier, G.6
Caboche, M.7
Lecharny, A.8
-
54
-
-
84883437756
-
Analysis of essential Arabidopsis nuclear genes encoding plastid-targeted proteins
-
Savage, L.J., Imre, K.M., Hall, D.A., and, Last, R.L., (2013) Analysis of essential Arabidopsis nuclear genes encoding plastid-targeted proteins. PLoS ONE, 8, e73291.
-
(2013)
PLoS ONE
, vol.8
-
-
Savage, L.J.1
Imre, K.M.2
Hall, D.A.3
Last, R.L.4
-
55
-
-
38549116060
-
Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana
-
DOI 10.1126/science.1150987
-
Saze, H., Shiraishi, A., Miura, A., and, Kakutani, T., (2008) Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana. Science, 319, 462-465. (Pubitemid 351160579)
-
(2008)
Science
, vol.319
, Issue.5862
, pp. 462-465
-
-
Saze, H.1
Shiraishi, A.2
Miura, A.3
Kakutani, T.4
-
56
-
-
33745393624
-
Highly specific gene silencing by artificial microRNAs in Arabidopsis
-
DOI 10.1105/tpc.105.039834
-
Schwab, R., Ossowski, S., Riester, M., Warthmann, N., and, Weigel, D., (2006) Highly specific gene silencing by artificial microRNAs in Arabidopsis. Plant Cell, 18, 1121-1133. (Pubitemid 43956120)
-
(2006)
Plant Cell
, vol.18
, Issue.5
, pp. 1121-1133
-
-
Schwab, R.1
Ossowski, S.2
Riester, M.3
Warthmann, N.4
Weigel, D.5
-
57
-
-
0033023132
-
Genetic analysis of leaf form mutants from the Arabidopsis Information Service collection
-
DOI 10.1007/s004380050016
-
Serrano-Cartagena, J., Robles, P., Ponce, M.R., and, Micol, J.L., (1999) Genetic analysis of leaf form mutants from the Arabidopsis Information Service collection. Mol. Gen. Genet. 261, 725-739. (Pubitemid 29286752)
-
(1999)
Molecular and General Genetics
, vol.261
, Issue.4-5
, pp. 725-739
-
-
Serrano-Cartagena, J.1
Robles, P.2
Ponce, M.R.3
Micol, J.L.4
-
58
-
-
0036910328
-
A high-throughput arabidopsis reverse genetics system
-
DOI 10.1105/tpc.004630
-
Sessions, A., Burke, E., Presting, G., et al. (2002) A high-throughput Arabidopsis reverse genetics system. Plant Cell, 14, 2985-2994. (Pubitemid 36029127)
-
(2002)
Plant Cell
, vol.14
, Issue.12
, pp. 2985-2994
-
-
Sessions, A.1
Burke, E.2
Presting, G.3
Aux, G.4
McElver, J.5
Patton, D.6
Dietrich, B.7
Ho, P.8
Bacwaden, J.9
Ko, C.10
Clarke, J.D.11
Cotton, D.12
Bullis, D.13
Snell, J.14
Miguel, T.15
Hutchison, D.16
Kimmerly, B.17
Mitzel, T.18
Katagiri, F.19
Glazebrook, J.20
Law, M.21
Goff, S.A.22
more..
-
59
-
-
35948989284
-
The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration
-
DOI 10.1038/nbt1346, PII NBT1346
-
Smith, B., Ashburner, M., Rosse, C., et al. (2007) The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nat. Biotechnol. 25, 1251-1255. (Pubitemid 350076511)
-
(2007)
Nature Biotechnology
, vol.25
, Issue.11
, pp. 1251-1255
-
-
Smith, B.1
Ashburner, M.2
Rosse, C.3
Bard, J.4
Bug, W.5
Ceusters, W.6
Goldberg, L.J.7
Eilbeck, K.8
Ireland, A.9
Mungall, C.J.10
Leontis, N.11
Rocca-Serra, P.12
Ruttenberg, A.13
Sansone, S.-A.14
Scheuermann, R.H.15
Shah, N.16
Whetzel, P.L.17
Lewis, S.18
-
60
-
-
41149143843
-
TAA1-Mediated Auxin Biosynthesis Is Essential for Hormone Crosstalk and Plant Development
-
DOI 10.1016/j.cell.2008.01.047, PII S0092867408002122
-
Stepanova, A.N., Robertson-Hoyt, J., Yun, J., Benavente, L.M., Xie, D.Y., Dolezal, K., Schlereth, A., Jurgens, G., and, Alonso, J.M., (2008) TAA1-mediated auxin biosynthesis is essential for hormone crosstalk and plant development. Cell, 133, 177-191. (Pubitemid 351442990)
-
(2008)
Cell
, vol.133
, Issue.1
, pp. 177-191
-
-
Stepanova, A.N.1
Robertson-Hoyt, J.2
Yun, J.3
Benavente, L.M.4
Xie, D.-Y.5
Dolezal, K.6
Schlereth, A.7
Jurgens, G.8
Alonso, J.M.9
-
61
-
-
0033197510
-
The Phosphoenolpyruvate/Phosphate translocator is required for phenolic metabolism, palisade cell development, and plastid-dependent nuclear gene expression
-
Streatfield, S.J., Weber, A., Kinsman, E.A., Hausler, R.E., Li, J., Post-Beittenmiller, D., Kaiser, W.M., Pyke, K.A., Flugge, U.I., and, Chory, J., (1999) The Phosphoenolpyruvate/Phosphate translocator is required for phenolic metabolism, palisade cell development, and plastid-dependent nuclear gene expression. Plant Cell, 11, 1609-1622.
-
(1999)
Plant Cell
, vol.11
, pp. 1609-1622
-
-
Streatfield, S.J.1
Weber, A.2
Kinsman, E.A.3
Hausler, R.E.4
Li, J.5
Post-Beittenmiller, D.6
Kaiser, W.M.7
Pyke, K.A.8
Flugge, U.I.9
Chory, J.10
-
62
-
-
64849088674
-
A protocol for efficiently retrieving and characterizing flanking sequence tags (FSTs) in Brachypodium distachyon T-DNA insertional mutants
-
Thole, V., Alves, S.C., Worland, B., Bevan, M.W., and, Vain, P., (2009) A protocol for efficiently retrieving and characterizing flanking sequence tags (FSTs) in Brachypodium distachyon T-DNA insertional mutants. Nat. Protoc. 4, 650-661.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 650-661
-
-
Thole, V.1
Alves, S.C.2
Worland, B.3
Bevan, M.W.4
Vain, P.5
-
63
-
-
77950437962
-
How effective is T-DNA insertional mutagenesis in Arabidopsis?
-
Wang, Y.H., (2008) How effective is T-DNA insertional mutagenesis in Arabidopsis? J. Biochem. Tech. 1, 11-20.
-
(2008)
J. Biochem. Tech.
, vol.1
, pp. 11-20
-
-
Wang, Y.H.1
-
64
-
-
0028007844
-
The spectral determination of chlorophylls a and b, as well as total carotenoids, using various solvents with spectrophotometers of different resolution
-
Wellburn, A., (1994) The spectral determination of chlorophylls a and b, as well as total carotenoids, using various solvents with spectrophotometers of different resolution. Plant Physiol. 144, 7.
-
(1994)
Plant Physiol.
, vol.144
, pp. 7
-
-
Wellburn, A.1
-
65
-
-
77954251724
-
Use of Illumina sequencing to identify transposon insertions underlying mutant phenotypes in high-copy Mutator lines of maize
-
Williams-Carrier, R., Stiffler, N., Belcher, S., Kroeger, T., Stern, D.B., Monde, R.A., Coalter, R., and, Barkan, A., (2010) Use of Illumina sequencing to identify transposon insertions underlying mutant phenotypes in high-copy Mutator lines of maize. Plant J. 63, 167-177.
-
(2010)
Plant J.
, vol.63
, pp. 167-177
-
-
Williams-Carrier, R.1
Stiffler, N.2
Belcher, S.3
Kroeger, T.4
Stern, D.B.5
Monde, R.A.6
Coalter, R.7
Barkan, A.8
-
66
-
-
33847311882
-
The WiscDsLox T-DNA collection: An Arabidopsis community resource generated by using an improved high-throughput T-DNA sequencing pipeline
-
Woody, S.T., Austin-Phillips, S., Amasino, R.M., and, Krysan, P.J., (2007) The WiscDsLox T-DNA collection: an Arabidopsis community resource generated by using an improved high-throughput T-DNA sequencing pipeline. J. Plant. Res. 120, 157-165.
-
(2007)
J. Plant. Res.
, vol.120
, pp. 157-165
-
-
Woody, S.T.1
Austin-Phillips, S.2
Amasino, R.M.3
Krysan, P.J.4
-
67
-
-
77954292774
-
The Arabidopsis Paf1c complex component CDC73 participates in the modification of FLOWERING LOCUS C chromatin
-
Yu, X., and, Michaels, S.D., (2010) The Arabidopsis Paf1c complex component CDC73 participates in the modification of FLOWERING LOCUS C chromatin. Plant Physiol. 153, 1074-1084.
-
(2010)
Plant Physiol.
, vol.153
, pp. 1074-1084
-
-
Yu, X.1
Michaels, S.D.2
|