Illumina sequencing technology as a method of identifying t-Dna insertion loci in activation- tagged arabidopsis thaliana plants

Molecular Plant

Volumn 5, Issue 4, 2012, Pages 948-950

  Polkoa, Joanna K ^a   Temannib, Mohamed Ramzi ^b,c   Van Zantena, Martijn ^a   Van Workumb, Wilbert ^b   Iburga, Sven ^a   Pierika, Ronald ^a   Voeseneka, Laurentius A C J ^a   Peetersa, Anton J M ^a  

^a UTRECHT UNIVERSITY   (Netherlands)

^b ServiceXS BV   (Netherlands)

^c Bldg 142   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS THALIANA;

EID: 84866396896     PISSN: 16742052     EISSN: 17529867     Source Type: Journal    
DOI: 10.1093/mp/sss022     Document Type: Letter

References (9)

1. Cronn, R., Liston, A., Parks, M., Gernandt, D.S., Shen, R., and Mockler, T. (2008). Multiplex sequencing of plant chloroplast genomes using Solexa sequencing by synthesis technology. Nucleic Acids Res. 36, e122.
2. Langmead, B., Trapnell, C., Pop, M., and Salzberg, S.L. (2009). Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25.
3. Laufs, P., Autran, D., and Traas, J. (1999). A chromosomal paracentric inversion associated with T-DNA integration in Arabidopsis. Plant J. 18, 131-139.
4. Nakazawa, M., Ichikawa, T., Ishikawa, A., Kobayashi, H., Tsuhara, Y., Kawashima, M., Suzuki, K., Muto, S., and Matsui, M. (2003). Activation tagging, a novel tool to dissect the functions of a gene family. Plant J. 34, 741-750.
5. Ostergaard, L., and Yanofsky, M. (2004). Establishing gene function by mutagenesis in Arabidopsis thaliana. Plant J. 39, 682-696.
6. Singer, T., and Burke, E. (2003). High-throughput TAIL-PCR as a tool to identify DNA flanking insertions. Methods Mol. Biol. 236, 241-272.Van Zanten, M., Pons, T.L., Janssen, J.A.M., Voesenek, L.A.C.J., and Peeters, A.J.M. (2010). On the relevance and control of leaf angle. Crit. Rev. Plant Sci. 29, 300-316.
7. Wei, W., Qi, X., Wang, L., Zhang, Y., Hua, W., Li, D., Lv, H., and Zhang, X. (2011). Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSRmarkers. BMC Genomics. 12, 451.
8. Weigel, D., et al. (2000). Activation tagging in Arabidopsis. Plant Physiol. 122, 1003-1013.
9. Williams-Carrier, R., Stiffler, N., Belcher, S., Kroeger, T., Stern, D.B., Monde, R., Coalter, R., and Barkan, A. (2010). Use of Illumina sequencing to identify transposon insertions underlying mutant phenotypes in high-copy Mutator lines of maize. Plant J. 63, 167-177.