The role of bacterial extracellular polymeric substances in geomicrobiology

Chemical Geology

Volumn 386, Issue , 2014, Pages 115-132

  Tourney, Janette ^a   Ngwenya, Bryne T ^a  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

Author keywords

Biomineralisation; Biosorption; Extracellular polymeric substances; Geomicrobiology

Indexed keywords

ADSORPTION; BACTERIA; BIOGEOCHEMISTRY; BIOLEACHING; BIOMINERALIZATION; BIOSORPTION; CELL MEMBRANES; CONTAMINATION; DISSOLUTION; FUNCTIONAL GROUPS; METALS; MICROBIOLOGY; MINERALS;

BIOGEOCHEMICAL MODELS; CONTAMINANT TRANSPORT; CRYSTAL MORPHOLOGIES; EXTRA-CELLULAR POLYMERIC SUBSTANCES; FUTURE RESEARCH DIRECTIONS; GEOMICROBIOLOGY; IN-LABORATORY EXPERIMENTS; SULPHATE REDUCING BACTERIA;

POLYMERS; BIOMINERALIZATION;

ADSORPTION; BACTERIUM; BIOGEOCHEMISTRY; BIOMINERALIZATION; CYANOBACTERIUM; DIATOM; FUNGUS; GEOMICROBIOLOGY; POLLUTANT TRANSPORT; POLYMER; POLYMORPHISM; REDOX CONDITIONS; SLUDGE;

BACILLARIOPHYTA; BACTERIA (MICROORGANISMS); CYANOBACTERIA; FUNGI;

EID: 84906777307     PISSN: 00092541     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chemgeo.2014.08.011     Document Type: Review

References (286)

1. 99Tc in organic matter-rich soils. Sci. Total Environ. 2005, 336:255-268.
2. Aksu Z. Determination of the equilibrium, kinetic and thermodynamic parameters of the batch biosorption of nickel(II) ions onto Chlorella vulgaric. Process Biochem. 2002, 38:89-99.
3. Aloisi G., Gloter A., Krüger M., Wallmann K., Guyot F., Zuddas P. Nucleation of calcium carbonate on bacterial nanoglobules. Geology 2006, 34:1017-1020.
4. Alvarado-Quiroz N.G., Hung C.-C., Santschi P.H. Binding of thorium(IV) to carboxylate, phosphate and sulphate functional groups from marine exopolymeric substances (EPS). Mar. Chem. 2006, 100:337-353.
5. Ams D.A., Swanson J.S., Szymanowski J.E.S., Fein J.B., Richmann M., Reed D.T. The effect of high ionic strength on neptunium (V) adsorption to a halophilic bacterium. Geochim. Cosmochim. Acta 2013, 110:45-57.
6. Anderson S., Dalhammar G., Rajarao G.K. Influence of microbial interactions and EPS/polysaccharide composition on nutrient removal activity in biofilms formed by strains found in wastewater treatment systems. Microbiol. Res. 2011, 166:449-457.
7. Arp G., Thiel V., Reimer A., Michaelis W., Reitner J. Biofilm exopolymers control microbialite formation at thermal springs discharging into the alkaline Pyramid Lake, Nevada, USA. Sediment. Geol. 1999, 126:159-176.
8. Aslam S.N., Underwood G.J.C., Kaartokallio H., Norman L., Autio R., Fischer M., Kuosa H., Dieckmann G.S., Thomas D.N. Dissolved extracellular polymeric substances (dEPS) dynamics and bacterial growth during sea ice formation in an ice tank study. Polar Biol. 2012, 35(5):661-676.
9. Barker W.W., Welch S.A., Chu S., Banfield J.F. Experimental observations of the effects of bacteria on aluminosilicate weathering. Am. Mineral. 1998, 83:1551-1563.
10. Bazylinski D.A., Frankel R.B. Biologically controlled mineralisation in prokaryotes. Rev. Mineral. Geochem. 2003, 54:217-247.
11. Beech I.B., Gaylarde C.C. Microbial polysaccharides and corrosion. Int. Biodeterior. Biodegrad. 1991, 27:95-107.
12. Beech I.B., Sunner J. Biocorrosion: towards understanding interactions between biofilms and metals. Curr. Opin. Biotechnol. 2004, 15:181-186.
13. Benning L.G., Phoenix V.R., Yee N., Konhauser K.O. The dynamics of cyanobacterial silicification: an infrared micro-spectroscopic investigation. Geochim. Cosmochim. Acta 2004, 68(4):743-757.
14. Benzerara K., Miot J., Morin G., Ona-Nguema G., Skouri-Panet F., Férard C. Significance, mechanisms and environmental implications of microbial biomineralization. Compt. Rendus Geosci. 2011, 343(2-3):160-167.
15. Bereswill S., Jock S., Bellemann P., Geider K. Identification of Erwinia amylovora by growth in the presence of copper sulfate and by capsule staining with lectin. Plant Dis. 1998, 82:158-164.
16. Bhaskar P.V., Bhosle N.B. Microbial extracellular substances in marine biogeochemical cycles. Curr. Sci. 2005, 88:45-53.
17. Bhaskar P.V., Bhosle N.B. Bacterial extracellular polymeric substance (EPS): a carrier of heavy metals in the marine food-chain. Environ. Int. 2006, 32(2):191-198.
18. Bhatia D., Bourven I., Simon S., Bordas F., van Hullebusch E.D., Rossano S., Lens P.N.L., Guibaud G. Fluorescence detection to determine proteins and humic-like substances fingerprints of exopolymeric substances (EPS) from biological sludges performed by size exclusion chromatography (SEC). Bioresour. Technol. 2013, 131:159-165.
19. Binupriya A.R., Sathishkumar M., Ku C.S., Yun S.-I. Sequestration of Reactive Blue 4 by free and immobilized Bacillus subtilis cells and its extracellular polysaccharides. Colloids Surf. B: Biointerfaces 2010, 76(1):179-185.
20. Bonny S.M., Jones B. Diatom-mediated barite precipitation in microbial mats calcifying at Stinking Springs, a warm sulphur spring system in Northwestern Utah, USA. Sediment. Geol. 2007, 194(3-4):223-244.
21. 4) crystals in calcite travertine at Twitya Spring, a warm sulphur spring in Canada's Northwest Territories. Sediment. Geol. 2008, 203(1-2):36-53.
22. Bontognali T.R.R., Vasconcelos C., Warthmann R.J., Dupraz C., Bernasconi S., McKenzie J.A. Microbes produce nanobacteria-like structures, avoiding cell entombment. Geology 2008, 36:663-666.
23. Boonfueng T., Axe L., Yee N., Hahn D., Ndiba P.K. Zn sorption mechanisms onto sheathed Leptothrix discophora and the impact of the nanoparticulate biogenic Mn oxide coating. J. Colloid Interface Sci. 2009, 333:439-447.
24. Borrok D., Fein J.B. Distribution of protons and Cd between bacterial surfaces and dissolved humic substances determined through chemical equilibrium modeling. Geochim. Cosmochim. Acta 2004, 68(14):3043-3052.
25. Borrok D.M., Fein J.B. The impact of ionic strength on the adsorption of protons, Pb, Cd, and Sr onto the surfaces of Gram negative bacteria: testing non-electrostatic, diffuse, and triple-layer models. J. Colloid Interface Sci. 2005, 286:110-126.
26. Borrok D., Fein J.B., Kulpa C.F. Proton and Cd adsorption onto natural bacterial consortia: testing universal adsorption behaviour. Geochim. Cosmochim. Acta 2004, 68:3231-3238.
27. Borrok D.M., Fein J.B., Kulpa C.F. Cd and proton adsorption onto bacterial consortia grown from industrial wastes and contaminated geologic settings. Environ. Sci. Technol. 2004, 38:5656-5664.
28. Borrok D., Fein J.B., Tischler M., O'Loughlin E., Meyer H., Liss M., Kemner K.M. The effect of acidic solutions and growth conditions on the adsorptive properties of bacterial surfaces. Chem. Geol. 2004, 209:107-119.
29. Borrok D., Turner B.F., Fein J.B. A universal surface complexation framework for modelling proton binding onto bacterial surfaces in geologic settings. Am. J. Sci. 2005, 305:826-853.
30. Borrok D., Aumend K., Fein J.B. Significance of ternary bacteria-metal-natural organic matter complexes determined through experimentation and chemical equilibrium modelling. Chem. Geol. 2007, 238:44-62.
31. Bosak T., Newman D.K. Microbial kinetic controls on calcite morphology in supersaturated soil. J. Sediment. Res. 2005, 75:190-199.
32. Boult S., Johnson N., Curtis C.D. Recognition of a biofilm at the sediment-water interface of an acid mine drainage-contaminated stream, and its role in controlling iron flux. Hydrol. Process. 1997, 11:391-393.
33. Braissant O., Cailleau G., Dupraz C., Verrecchia E.P. Bacterially induced mineralisation of calcium carbonate in terrestrial environments: the role of exopolysaccharides and amino acids. J. Sediment. Res. 2003, 73(3):485-490.
34. Braissant O., Decho A.W., Przekop K.M., Gallagher K.L., Glunk C., Dupraz C., Visscher P.T. Characteristics and turnover of exopolymeric substances in a hypersaline microbial mat. FEMS Microbiol. Ecol. 2009, 67:293-307.
35. Bundeleva I.A., Ménez B., Augé T., Bodénan F., Recham N., Guyot F. Effect of cyanobacteria Synechococcus PCC 7942 on carbonation kinetics of olivine at 20°C. Miner. Eng. 2014, 59:2-11.
36. Burnett P.-G.G., Daughney C.J., Peak D. Cd adsorption onto Anoxybacillus flavithermus: surface complexation modelling and spectroscopic investigations. Geochim. Cosmochim. Acta 2006, 70:5253-5269.
37. Burnett P.-G., Heinrich H., Peak D., Bremer P.J., McQuillan A.J., Daughney C.J. The effect of pH and ionic strength on proton adsorption by the thermophilic bacterium Anoxybacillus flavithermus. Geochim. Cosmochim. Acta 2006, 70:1914-1927.
38. Burnett P.-G.G., Handley K., Peak D., Daughney C.J. Divalent metal adsorption by the thermophile Anoxybacillus flavithermus in single and multi-metal systems. Chem. Geol. 2007, 244:493-506.
39. Cammarota M.C., Sant'Anna G. Metabolic blocking of exopolysaccharides synthesis: effects on microbial adhesion and biofilm accumulation. Biotechnol. Lett. 1998, 20:1-4.
40. Cangemia M., Bellancaa A., Borin S., Hopkinson L., Mapelli F., Neria R. The genesis of actively growing siliceous stromatolites: Evidence from Lake Specchio di Venere, Pantelleria Island, Italy. Chem. Geol. 2010, 276:318-330.
41. Cao B., Ahmed B., Kennedy D.W., Wang Z., Shi L., Marshall M.J., Fredrickson J.K., Isern N.G., Majors P.D., Beyebal H. Contribution of extracellular polymeric substances from Shewanella sp. HRCR-1 biofilms to U(VI) immobilization. Environ. Sci. Technol. 2011, 13:5483-5490.
42. Cao Y., Wei X., Cai P., Huang Q., Rong X., Liang W. Preferential adsorption of extracellular polymeric substances from bacteria on clay minerals and iron oxide. Colloids Surf. B: Biointerfaces 2011, 83:122-127.
43. Celik G.Y., Aslim B., Beyatli Y. Characterization and production of the exopolysaccharide (EPS) from Pseudomonas aeruginosa G1 and Pseudomonas putida G12 strains. Carbohydr. Polym. 2008, 73:178-182.
44. Chan C.S., De Stasio G., Welch S.A., Girasole M., Frazer B.H., Nesterova M.V., Fakra S., Banfield J. Microbial polysaccharides template assembly of nanocrystal fibres. Science 2004, 303:1656-1658.
45. Chatellier X., Fortin D. Adsorption of ferrous ions onto Bacillus subtilis cells. Chem. Geol. 2004, 212:209-222.
46. Chen J.-H., Lion L.W., Ghiorse W.C., Schuler M.L. Mobilisation of adsorbed cadmium and lead in aquifer material by bacterial extracellular polymers. Water Res. 1995, 29:421-430.
47. Chen Y.-P., Zhang P., Guo J.-S., Fang F., Gao X., Li C. Functional group characteristics of EPS in biofilm growing on different carriers. Chemosphere 2013, 92(6):633-638.
48. Chien C.-C., Lin B.-C., Wu C.-H. Biofilm formation and heavy metal resistance by an environmental Pseudomonas sp. Biochem. Eng. J. 2013, 78:132-137.
49. Chin W.-C., Orellana M.V., Verdugo P. Formation of microgels by spontaneous assembly of dissolved marine polymers. Nature 1998, 391:568-572.
50. 2+ by viable and autoclaved Shewanella putrefaciens: effect of contact time. Geochim. Cosmochim. Acta 2013, 100:232-250.
51. 2+ to live cells of Shewanella putrefaciens. Environ. Sci. Technol. 2007, 41:909-914.
52. Comte S., Guibaud G., Baudu M. Biosorption properties of extracellular polymeric substances (EPS) resulting from activated sludge according to their type: soluble or bound. Process Biochem. 2006, 41:815-823.
53. Comte S., Guibaud G., Baudu M. Relations between extraction protocols for activated sludge extracellular polymeric substances (EPS) and EPS complexation properties Part I. Comparison of the efficiency of eight EPS extraction methods. Enzym. Microb. Technol. 2006, 38:237-245.
54. 2+ complexation. Enzym. Microb. Technol. 2006, 38:246-252.
55. Comte S., Guibaud G., Baudu M. Biosorption properties of extracellular polymeric substances (EPS) towards Cd, Cu and Pb for different pH values. J. Hazard. Mater. 2008, 5(1):185-193.
56. Cox J.S., Smith D.S., Warren L.A., Ferris F.G. Characterising heterogeneous bacterial surface functional groups using discrete affinity spectra for proton binding. Environ. Sci. Technol. 1999, 33:4514-4521.
57. Czajka D.R., Lion L.W., Schuler M.L., Ghiorse W.C. Evaluation of the utility of bacterial extracellular polymers for the treatment of metal-contaminated soils: polymer persistence, mobility and the influence of lead. Water Res. 1997, 31:2827-2839.
58. D'Abzac P., Bordas F., Van Hullebusch E., Lens P.N.L., Guibaud G. Effects of extraction procedures on metal binding properties of extracellular polymeric substances (EPS) from anaerobic granular sludges. Colloids Surf. B: Biointerfaces 2010, 80:161-168.
59. D'Abzac P., Bordas F., Joussein E., van Hullebusch E.D., Lens P.N.L., Guibaud G. Metal binding properties of extracellular polymeric substances extracted from anaerobic granular sludges. Environ. Sci. Pollut. Res. 2013, 20(7):4509-4519.
60. Daniels J.L., Cherukuri R., Ogunro V.O. Consolidation and strength characteristics of biofilm amended barrier soils. Appropriate Technologies for Environmental Protection in the Developing World 2009, 257-270. E.K. Yanful (Ed.).
61. 2+ by Bacillus subtilis and Bacillus licheniformis: a surface complexation model. J. Colloid Interface Sci. 1998, 198:53-77.
62. Daughney C.J., Fowle D.A., Fortin D. The effect of growth phase on proton and metal adsorption by Bacillus subtilis. Geochim. Cosmochim. Acta 2001, 65:1025-1035.
63. Decho A.W. Overview of biopolymer-induced mineralization: what goes on in biofilms?. Ecol. Eng. 2010, 36(2):137-144.
64. Dimkpa C.O., Calder A., Gaijar P., Merugu S., Huang W., Britt D.W., McLean J.E., Johnson W.P., Anderson A.J. Interaction of silver nanoparticles with and environmentally beneficial bacterium, Pseudomonas chlororaphis. J. Hazard. Mater. 2011, 188:428-435.
65. Dittrich M., Sibler S. Calcium carbonate precipitation by cyanobacterial polysaccharides. Geol. Soc. Spec. Publ. 2010, 336:51-63.
66. Douglas S., Beveridge T.J. Mineral formation by bacteria in natural microbial communities. FEMS Microbiol. Ecol. 1998, 26:79-88.
67. Dunham-Cheatham S., Farrell B., Mishra B., Mynemi S., Fein J.B. The effect of chloride on the adsorption of Hg onto three bacterial species. Chem. Geol. 2014, 373:106-114.
68. Dupraz C., Visscher P.T. Microbial lithification in marine stromatolites and hypersaline mats. Trends Microbiol. 2005, 13(9):429-438.
69. Dupraz C., Visscher P.T., Baumgartner L.K., Reid R.P. Microbe-mineral interactions: early carbonate precipitation in a hypersaline lake (Eleuthera Island, Bahamas). Sedimentology 2004, 51:745-765.
70. Dupraz C., Reid R.P., Braissant O., Decho A.W., Norman R.S., Visscher P.T. Processes of carbonate precipitation in modern microbial mats. Earth Sci. Rev. 2009, 96(3):141-162.
71. Eboigbodin K.E., Ojeda J.J., Biggs C.A. Investigating the surface properties of Escherichia coli under glucose controlled conditions and its effect on aggregation. Langmuir 2007, 23:6691-6697.
72. Ehrlich H.L. How microbes influence mineral growth and dissolution. Chem. Geol. 1996, 132:5-9.
73. Erlandsen S.L., Kristich C.J., Dunny G.M., Wells C.L. High-resolution visualisation of the microbial Glycocalyx with low-voltage scanning electron microscopy: dependence on cationic dyes. J. Histochem. Cytochem. 2004, 52:1427-1435.
74. Fang L., Huang Q., Wei X., Liang W., Rong X., Chen W., Cai P. Microcalorimetric and potentiometric titration studies on the adsorption of copper by extracellular polymeric substances (EPS), minerals and their composites. Bioresour. Technol. 2010, 101:5774-5779.
75. Fang L., Wei X., Cai P., Huang Q., Chen H., Liang W., Rong X. Role of extracellular polymeric substances in Cu(II) adsorption on Bacillus subtillis and Pseudomonas putida. Bioresour. Technol. 2011, 102:1137-1141.
76. Fein J.B. Quantifying the effects of bacteria on adsorption reactions in water-rock systems. Chem. Geol. 2000, 169:165-280.
77. Fein J.B. Thermodynamic modelling of metal adsorption onto bacterial cell walls: current challenges. Adv. Agron. 2006, 90:179-202.
78. Fein J.B., Delea D. Experimental study of the effect of EDTA on Cd adsorption by Bacillus subtilis: a test of the chemical equilibrium approach. Chem. Geol. 1999, 161(4):375-383.
79. Fein J.B., Daughney C.J., Yee N., Davis T.A. A chemical equilibrium model for metal adsorption onto bacterial surfaces. Geochim. Cosmochim. Acta 1997, 61:3319-3328.
80. Fein J.B., Boily J.-F., Guclu K., Kaulbach E. Experimental study of humic acid adsorption onto bacteria and Al-oxide mineral surfaces. Chem. Geol. 1999, 162(1):33-45.
81. Fein J.B., Boily J.-F., Yee N., Gorman-Lewis D., Turner B.F. Potentiometric titrations of Bacillus subtilis cells to low pH and a comparison of modelling approaches. Geochim. Cosmochim. Acta 2005, 69:1123-1132.
82. Flemming H.-C., Wingender J. Relevance of microbial extracellular polymeric substances (EPSs) - part 1: structural and ecological aspects. Water Sci. Technol. 2001, 43:1-8.
83. Fortin D., Beveridge T.J. Role of the bacterium Thiobacillus in the formation of silicates in acidic mine tailings. Chem. Geol. 1997, 141:235-250.
84. Fortin D., Langley S. Formation and occurrence of biogenic iron-rich minerals. Earth Sci. Rev. 2005, 72:1-19.
85. Fowle D.A., Fein J.B. Competitive adsorption of metal cations onto two gram positive bacteria: testing the chemical equilibrium model. Geochim. Cosmochim. Acta 1999, 63:3059-3067.
86. Francis A.J., Dodge C.J., Gillow J.B., Papenguth H.W. Biotransformation of uranium compounds in high ionic strength brine by a halophilic bacterium under denitrifying conditions. Environ. Sci. Technol. 2000, 34:2311-2317.
87. Frankel R.B., Bazylinski D.A. Biologically induced mineralisation by bacteria. Rev. Mineral. Gechem. 2003, 54:95-114.
88. Freire-Nordi C.S., Vieira A.A.H., Nascimento O.R. The metal binding capacity of Anabaena spiroides extracellular polysaccharide: an EPR study. Process Biochem. 2005, 40:2215-2224.
89. Frolund B., Palmgren R., Keiding K., Nielsen P.H. Extraction of extracellular polymers from activated sludge using a cation exchange resin. Water Res. 1996, 30:1749-1758.
90. Gallagher K.L., Braissant O., Kading T.J., Dupraz C., Visscher P.T. Phosphate related artefacts in carbonate mineralisation experiments. J. Sediment. Res. 2013, 83:39-51.
91. Gao Q., Leck C., Rauschenberg C., Matrai P.A. On the chemical dynamics of extracellular polysaccharides in the high Arctic surface microlayer. Ocean Sci. 2012, 8(4):401-418.
92. García-Del-Cura M.A., Sanz-Montero M.E., De-los-Ríos M.A., Ascaso A. Microbial dolomite in fresh water carbonate deposits. Sedimentology 2013, 61:41-55.
93. Gerbersdorf S.U., Jancke T., Westrich B., Paterson D.M. Microbial stabilization of riverine sediments by extracellular polymeric substances. Geobiology 2008, 6(1):57-69.
94. Gerbersdorf S.U., Westrich B., Paterson D.M. Microbial extracellular polymeric substances (EPS) in fresh water sediments. Microb. Ecol. 2009, 58(2):334-349.
95. Ginn B., Fein J.B. Temperature dependence of Cd and Pb binding onto bacterial cells. Chem. Geol. 2009, 259:99-106.
96. Glunk C., Dupraz C., Braissant O., Gallagher K.L., Verrecchia E.P., Visscher P.T. Microbially mediated carbonate precipitation in a hypersaline lake, Big Pond (Eleuthera, Bahamas). Sedimentology 2011, 58(3):720-738.
97. Gonzalez A.G., Shirokova L.S., Pokrovsky O.S., Emnova E.E., Martinez R.E., Santana-Casiano J.M., Gonzalez-Davilla M., Pokrovski G.S. Adsorption of copper on Pseudomonas aureofaciens: protective role of surface exopolysaccharides. J. Colloid Interface Sci. 2010, 340:305-314.
98. Gorman-Lewis D. Calorimetric measurements of proton adsorption onto Pseudomonas putida. J. Colloid Interface Sci. 2009, 337(2):390-395.
99. Gorman-Lewis D. Enthalpies of proton adsorption onto Bacillus licheniformis at 25, 37, 50, and 75°C. Geochim. Cosmochim. Acta 2011, 75(5):1297-3007.
100. Gorman-Lewis D., Fein J., Jensen M.P. Enthalpies and entropies of proton and cadmium adsorption onto Bacillus subtilis cells from calorimetric measurements. Geochim. Cosmochim. Acta 2006, 70:4862-4873.
101. Gorman-Lewis D., Jensen M.P., Harrold Z.R., Hertel M.R. Complexation of neptunium(V) with Bacillus subtilis endospore surfaces and their exudates. Chem. Geol. 2013, 341:75-83.
102. Govender Y., Gericke M. Extracellular polymeric substances (EPS) from bioleaching systems and its application in bioflotation. Miner. Eng. 2011, 24(11):1122-1127.
103. Guibaud G., Tixier N., Bouju A., Baudu M. Relation between extracellular polymers composition and its ability to complex Cd, Cu and Pb. Chemosphere 2003, 52:1701-1710.
104. Guibaud G., Tixier N., Bouju A., Baudu M. Use of a polarographic method to determine copper, nickel and zinc constants of complexation by extracellular polymers extracted from activated sludge. Process Biochem. 2004, 39:833-839.
105. Guibaud G., Comte S., Bordas F., Baudu M. Metal removal from single and multimetallic equimolar systems by extracellular polymers extracted from activated sludges as evaluated by SMDE polarography. Process Biochem. 2005, 40:661-668.
106. Guibaud G., Comte S., Bordas F., Dupuy S., Baudu M. Comparison of the complexation potential of extracellular polymeric substances (EPS), extracted from activated sludges and produced by pure bacteria strains, for cadmium, lead and nickel. Chemosphere 2005, 59:629-638.
107. Guibaud G., Bordas F., Saaid A., d'Abzac P., Van Hullebusch E. Effect of pH on cadmium and lead binding by extracellular polymeric substances (EPS) extracted from environmental bacterial strains. Colloids Surf. B: Biointerfaces 2008, 63:48-54.
108. Guibaud G., van Hullebusch E., Bordas F., d'Abzac P., Joussein E. Sorption of Cd(II) and Pb(II) by exopolymeric substances (EPS) extracted from activated sludges and pure bacterial strains: modeling of the metal/ligand ratio effect and role of the mineral fraction. Bioresour. Technol. 2009, 100:2959-2968.
109. Guine V., Spadini L., Sarret G., Muris M., Delolme C., Gaudet J.-P., Martins J.M.F. Zinc sorption to three gram-negative bacteria: combined titration, modelling and EXAFS study. Environ. Sci. Technol. 2006, 40:1806-1813.
110. Guine V., Martins J.M.F., Causse B., Durand A., Gaudet J.-P., Spadini L. Effect of cultivation and experimental conditions on the surface reactivity of the metal-resistant bacteria Cupriavidus metallidurans CH34 to protons, cadmium and zinc. Chem. Geol. 2007, 236:266-280.
111. Gutierrez T., Shimmield T., Haidon C., Black K., Green D.H. Emulsifying and metal binding activity of a glycoprotein exopolymer produced by a Pseudoalteromonas sp. Starin TG12. Appl. Environ. Microbiol. 2008, 74:4867-4876.
112. Gutierrez T., Biller D.V., Shimmield T., Green D.H. Metal binding properties of the EPS produced by Halomonas sp. TG39 and its potential in enhancing trace element bioavailability to eukaryotic phytoplankton. Biometals 2012, 25:1185-1194.
113. Ha J., Gelabert A., Spormann A.M., Brown G.E. Role of extracellular polymeric substances in metal ion complexation on Shewanella oneidensis: batch uptake, thermodynamic modelling, ATR-FTIR, and EXAFS study. Geochim. Cosmochim. Acta 2010, 74:1-15.
114. Haas J.R. Effects of cultivation conditions on acid-base titration properties of Shewanella putrefaciens. Chem. Geol. 2004, 209:67-81.
115. Haas J.R., Dichristina T.J., Wade R. Thermodynamics of U(VI) sorption onto Shewanella putrefaciens. Chem. Geol. 2001, 180:33-54.
116. Hägele D., Leinfelder R., Grau J., Burmeister E.-G., Struck U. Oncoids from the river Alz (southern Germany): tiny ecosystems in a phosphorus-limited environment. Palaeogeogr. Palaeoclimatol. Palaeoecol. 2006, 237(2-4):378-395.
117. Handley K.M., Turner S.J., Campbell K.A., Mountain B.W. Silicifying biofilm exopolymers on a hot-spring microstromatolite: templating nanometer-thick laminae. Astrobiology 2008, 8:747-770.
118. Hao L., Li J., Kappler A., Obst M. Mapping of heavy metal ion sorption to cell-extracellular polymeric substance-mineral aggregates by using metal-selective fluorescent probes and confocal laser scanning microscopy. Appl. Environ. Microbiol. 2013, 79:6524-6534.
119. Harrold Z.R., Gorman-Lewis D. Thermodynamic analysis of Bacillus subtilis endospore protonation using isothermal titration calorimetry. Geochim. Cosmochim. Acta 2013, 109:296-30.
120. Harvey R.W., Leckie J.O. Sorption of lead onto two gram-negative marine bacteria in seawater. Mar. Chem. 1985, 15(4):333-344.
121. Hassler C.S., Alansonati E., Mancuso N.C.A., Slaveykova V.I. Exopolysaccharides produced by bacteria isolated from the pelagic Southern Ocean - role of Fe binding, chemical reactivity and bioavailability. Mar. Chem. 2011, 123:88-98.
122. Hassler C.S., Schoemann V., Mancuso N.C.A., Butler E.C.V., Boyd P.W. Saccharides enhance iron bioavailability to Southern Ocean phytoplankton. Proc. Natl. Acad. Sci. 2011, 108:1076-1081.
123. Heinrich H.T.M., Bremer P.J., Daughney C.J., McQuillan A.J. Acid-base titrations of functional groups on the surface of the thermophilic bacterium Anoxybacillus flavithermus: comparing a chemical equilibrium model with ATR-IR spectroscopic data. Langmuir 2007, 23:2731-2740.
124. Henao L.J., Mazeau K. Molecular modelling studies of clay-exopolysaccharide complexes: soil aggregation and water retention phenomena. Mater. Sci. Eng. C- Mater. Biol. Appl. 2009, 29(8):2326-2332.
125. Henriques I.D.S., Love N.G. The role of extracellular polymeric substances in the toxicity response of activated sludge bacteria to chemical toxins. Water Res. 2007, 41:4177-4185.
126. Hetzer A., Daughney C.J., Morgan H.W. Cadmium ion biosorption by the thermophilic bacteria Geobacillus stearothermophilus and G. thermocatenulatus. Appl. Environ. Microbiol. 2006, 72:4020-4027.
127. Hitchcock A.P., Dynes J.J., Lawrence J.R., Obst M., Swerhone G.D.W., Korber D.R., Leppard G.G. Soft X-ray spectromicroscopy of nickel sorption in a natural river biofilm. Geobiology 2009, 7:432-453.
128. Hong Y., Brown D.G. Cell surface acid-base properties of Escherichia coli and Bacillus brevis and variation as a function of growth phase, nitrogen source and C:N ratio. Colloids Surf. B: Biointerfaces 2006, 50:132-139.
129. Hong Z., Chen W., Rong X., Cai P., Dai K., Huang Q. The effect of extracellular polymeric substances on the adhesion of bacteria to clay minerals and goethite. Chem. Geol. 2013, 360:118-125.
130. Hoskins D.L., Stancyk S.E., Decho A.W. Utilization of algal and bacterial extracellular polymeric secretions (EPS) by the deposit-feeding brittlestar Amphipholis gracillima (Echinodermata). Mar. Ecol. Prog. Ser. 2003, 247:93-101.
131. 2+. J. Hazard. Mater. 2013, 261:614-620.
132. Hu C.X., Liu Y.D., Paulsen B.S., Petersen D., Klaveness B. Extracellular carbohydrate polymers from five desert soil algae with different cohesion in the stabilization of fine sand grain. Carbohydr. Polym. 2003, 54(1):33-42.
133. Jahn A., Nielsen P.H. Cell biomass and exopolymer composition in sewer biofilms. Water Sci. Technol. 1998, 37(1):17-24.
134. Jensen-Spaulding A., Cabral K., Schuler M.L., Lion L.W. Predicting the rate and extent of cadmium and copper desorption from soils in the presence of bacterial extracellular polymer. Water Res. 2004, 38:2231-2240.
135. Johnson K.J., Szymanowski J.E.S., Borrok D., Huynh T.Q., Fein J.B. Proton and metal adsorption onto bacterial consortia: stability constants for metal-bacterial surface complexes. Chem. Geol. 2007, 239:13-26.
136. Jones B., Peng X. Hot spring deposits on a cliff face: a case study from Jifei, Yunnan Province, China. Sediment. Geol. 2014, 302:1-28.
137. Jones H.C., Roth I.L., Sanders W.M. Electron microscopic study of a slime layer. J. Bacteriol. 1969, 99(1):316-325.
138. Joshi N., Ngwenya B.T., French C.E. Enhanced resistance to nanoparticle toxicity is conferred by overproduction of extracellular polymeric substances. J. Hazard. Mater. 2012, 241-242:363-370.
139. Kadar E., Cunliffe M., Fisher A., Stolpe B., Lead J., Shi Z. Chemical interaction of atmospheric mineral dust-derived nanoparticles with natural seawater - EPS and sunlight-mediated changes. Sci. Total Environ. 2014, 469:265-271.
140. Kang Y.-S., Park W. Protection against diesel oil toxicity by sodium chloride-induced exopolysaccharides in Acinetobacter sp. strain DR1. J. Biosci. Bioeng. 2010, 109(2):118-123.
141. Kang F., Zhu D. Abiotic reduction of 1,3-dinitrobenzene by aqueous dissolved extracellular polymeric substances produced by microorganisms. J. Environ. Qual. 2013, 42(5):1441-1448.
142. + to silver nanoparticles and antagonize bactericidal activity. Environ. Sci. Technol. 2014, 48(1):316-322.
143. Kantar C., Demiary H., Dogan N.M., Dodge C.J. Role of microbial exopolymeric substances (EPS) on chromium sorption and transport in heterogeneous subsurface soils: I. Cr(III) complexation with EPS in aqueous solution. Chemosphere 2011, 82:1489-1495.
144. Kantar C., Demiary H., Dogan N.M. Role of microbial exopolymeric substances (EPS) on chromium sorption and transport in heterogeneous subsurface soils: II. Binding of Cr(III) in EPS/soil system. Chemosphere 2011, 82:1496-1505.
145. Kasama T., Murakami T. The effect of microorganisms on Fe precipitation rates at neutral pH. Chem. Geol. 2001, 180(1-4):117-128.
146. 3 polymorphism. J. Cryst. Growth 2002, 240:230-235.
147. Kennedy A.F.D., Sutherland I.W. Analysis of bacterial exopolysaccharides. Biotechnol. Appl. Biochem. 1987, 9:12-19.
148. Kenney J.P.L., Fein J.B. Importance of extracellular polysaccharides on proton and Cd binding to bacterial biomass: a comparative study. Chem. Geol. 2011, 286(3-4):109-117.
149. Kenney J.P.L., Song Z., Bunker B.A., Fein J.B. An experimental study of Au removal from solution by non-metabolizing bacterial cells and their exudates. Geochim. Cosmochim. Acta 2012, 87:51-60.
150. Kenward P.A., Fowle D.A., Yee N. Microbial selenate sorption and reduction in nutrient limited systems. Environ. Sci. Technol. 2006, 40:3782-3786.
151. Khan S., Mukherjee A., Chandrasekaran N. Silver nanoparticles tolerant bacteria from sewage environment. J. Environ. Sci. 2011, 23(2):346-352.
152. Kim G. Hydraulic conductivity change of bio-barrier formed in the subsurface by the adverse conditions including freeze-thaw cycles. Cold Reg. Sci. Technol. 2014, 38(1-2):153-164.
153. Kim H.N., Hong Y., Lee I., Bradford S.A., Walker S.L. Surface characteristics and adhesion behaviour of Escherischia coli 0157:H7: role of extracellular polymers. Biomacromolecules 2009, 10:2556-2564.
154. Kinzler K., Gehrke T., Telegdi J., Sand W. Bioleaching-a result of interfacial processes caused by extracellular polymeric substances (EPS). Hydrometallurgy 2003, 71:83-88.
155. Kives J., Orgaz B., SanJose C. Polysaccharide differences between planktonic and biofilm-associated EPS from Pseudomonas fluorescens B52. Colloids Surf. B: Biointerfaces 2006, 50:104-108.
156. Kremer B., Kazmierczak J., Stal L.J. Calcium carbonate precipitation in cyanobacterial mats form sandy tidal flats of the North Sea. Geobiology 2008, 6:46-56.
157. Krumbein W.E., Giele C. Calcification in a coccoid cyanobacterium associated with the formation of desert stromatolites. Sedimentology 1979, 26:593-604.
158. Kulak A.N., Iddon P., Li Yuting, Armes S.P., Colfen H., Paris O., Wilson R.M., Meldrum F.C. Continuous structural evolution of calcium carbonate particles: a unifying model of copolymer-mediated crystallization. J. Am. Chem. Soc. 2007, 129:3729-3736.
159. Lalonde S.V., Amskold L.A., Warren L.A., Konhauser K.O. Surface chemical reactivity and metal adsorptive properties of natural cyanobacterial mats from an alkaline hydrothermal spring, Yellowstone National Park. Chem. Geol. 2007, 243:36-52.
160. 2+ binding properties of the bacterial exopolysaccharides. Chemosphere 2006, 65(8):1362-1370.
161. Laspidou C.S., Rittmann B.E. A unified theory for extracellular polymeric substances, soluble microbial products, and active and inert biomass. Water Res. 2002, 36(11):2711-2720.
162. 2-dependent damage. J. Bacteriol. 2013, 195:5362-5369.
163. Lerner R.N., Lu Q., Zeng H., Liu Y. The effects of biofilm on the transport of stabilized zerovalent iron nanoparticles in saturated porous media. Water Res. 2012, 46(4):975-985.
164. Leveille R.J., Fyfe W.S., Longstaffe F.J. Geomicrobiology of carbonate-silicate microbialites from Hawaiian basaltic sea caves. Chem. Geol. 2000, 169:339-355.
165. Li W.-W., Yu H.-Q. Insight into the roles of microbial extracellular polymer substances in metal biosorption. Bioresour. Technol. 2014, 160:15-23. 10.1016/j.biortech.2013.11.074.
166. Lian B., Hu Q., Chen J., Ji J., Teng H.H. Carbonate biomineralization induced by soil bacterium Bacillus megaterium. Geochim. Cosmochim. Acta 2006, 70:5522-5535.
167. Lin H., Zhang M., Wang F., Meng F., Liao B.-Q., Hong H., Chen J., Gao W. A critical review of extracellular polymeric substances (EPSs) in membrane bioreactors: characteristics, roles in membrane fouling and control strategies. J. Membr. Sci. 2014, 460:110-125.
168. Liu H., Fang H.H.P. Characterization of electrostatic binding sites of extracellular polymers by linear programming analysis of titration data. Biotechnol. Bioeng. 2002, 80:806-811.
169. Liu Y., Yang C.-H., Li J. Influence of extracellular polymeric substances on Pseudomonas aeruginosa transport and deposition profiles in porous media. Environ. Sci. Technol. 2007, 41:198-205.
170. Lloyd J.R. Microbial reduction of metals and radionuclides. FEMS Microbiol. Rev. 2003, 27(2-3):411-425.
171. Loaec M., Olier R., Guezennec J. Uptake of lead, cadmium and zinc by a novel bacterial exopolysaccharide. Water Res. 1997, 31:1171-1179.
172. Loaec M., Olier R., Guezennec J. Chelating properties of bacterial exopolysaccharides from deep-sea hydrothermal vents. Carbohydr. Polym. 1998, 35:65-70.
173. Lundberg J., McFarlane D.A. Subaerial freshwater phosphatic stromatolites in Deer Cave, Sarawak - a unique geobiological cave formation. Geomorphology 2011, 128(1-2):57-72.
174. Lundkvist M., Gangelhof U., Lunding J., Flindt M.R. Production and fate of extracellular polymeric substances produced by benthic diatoms and bacteria: a laboratory study. Estuar. Coast. Shelf Sci. 2007, 75(3):337-346.
175. Macaskie L.E., Basnakova G. Microbially-enhanced chemisorption of heavy metals: a method for the bioremediation of solutions containing long-lived isotopes of neptunium and plutonium. Environ. Sci. Technol. 1998, 32:184-187.
176. Macaskie L.E., Bonthrone K.M., Yong P., Goddard D.T. Enzymatically mediated bioprecipitation of uranium by a Citrobacter sp.: a concerted role for exocellular lipopolysaccharide and associated phosphatise in biomineral formation. Microbiology 2000, 146:1855-1867.
177. Martin-Algarra A., Sanchez-Navas A. Phosphate stromatolites from condensed cephalopod limestones, Upper Jurassic, Southern Spain. Sedimentology 1995, 42:89.
178. a distribution method. J. Colloid Interface Sci. 2002, 253:130-139.
179. Marvasi M., Visscher P.T., Casillas Martinez L. Exopolymeric substances (EPS) from Bacillus subtilis: polymers and genes encoding their synthesis. FEMS Microbiol. Lett. 2010, 313:1-9.
180. Maugeri T.L., Guglianolo C., Caccamo D., Panico A., Lama L., Gambacorta A., Nicolaus B. A halophilic thermotolerant Bacillus isolated from a marine hot spring able to produce a new exopolysaccharide. Biotechnol. Lett. 2002, 24:515-519.
181. McLean R.J.J., Beauchemin D., Clapham L., Beveridge T.J. Metal-binding characteristics of the gamma-glutamyl capsular polymer of Bacillus licheniformis ATCC 9945. Appl. Environ. Microbiol. 1990, 56(12):3671-3677.
182. Merroun M.L., Ben Chekroun K., Arias J.M., Gonzalez-Munoz M.T. Lanthanum fixation by Myxococcus xanthus: cellular location and extracellular polysaccharide observation. Chemosphere 2003, 52:113-120.
183. Miot J., Benzerara K., Morin G., Kappler A., Bernard S., Obst M., Férard C., Skouri-Panet F., Guigner J.-M., Posth N., Galvez M., Brown G.E., Guyot F. Iron biomineralization by anaerobic neutrophilic iron-oxidizing bacteria. Geochim. Cosmochim. Acta 2009, 73(3):696-711.
184. Mitzel M.R., Tufenkji N. Transport of industrial PVP-stabilized silver nanoparticles in saturated quartz sand coated with Pseudomonas aeruginosa PAO1 biofilm of variable age. Environ. Sci. Technol. 2014, 48:2715-2723.
185. Moon E.M., Peacock C.L. Adsorption of Cu(II) to Bacillus subtilis: a pH-dependent EXAFS and thermodynamic modelling study. Geochim. Cosmochim. Acta 2011, 75(21):6705-6719.
186. Moreau J., Weber P., Martin M., Webb R., Gilbert B., Hutcheon I., Banfield J. Submicron-scale isotopic variations within biogenic ZnS record the mechanism and kinetics of extracellular metal-sulfide biomineralization. Geochim. Cosmochim. Acta 2006, 70(18):A428.
187. Navarrete F., De La Fuente L. Response of Xylella fastidiosa to zinc: decreased culturability, increased exopolysaccharide production, and formation of resilient biofilms under flow conditions. Appl. Environ. Microbiol. 2014, 80:1097-1107.
188. Nesterova M.V., Walton S.A., Webb J. Nanoscale iron(III) oxyhydroxy aggregates formed in the presence of functional water-soluble polymers: models for iron(III) biomineralisation processes. J. Inorg. Biochem. 2000, 79(1-4):109-118.
189. Ngwenya B.T. Enhanced adsorption of zinc is associated with aging and lysis of bacterial cells in batch incubations. Chemosphere 2007, 67:1982-1992.
190. Ngwenya B.T., Sutherland I.W., Kennedy L. Comparison of the acid-base behaviour and metal adsorption characteristics of a gram-negative bacterium with other strains. Appl. Geochem. 2003, 18:527-538.
191. Ngwenya B.T., Tourney J., Magennis M., Kapetas L., Olive V. A surface complexation framework for predicting water purification through metal biosorption. Desalination 2009, 248(1-3):344-351.
192. Ngwenya, B.T., Magennis, M., Podda, F., Gromov, A., (in revision). Self-preservation strategies during bacterial biomineralisation and implications for fossilisation of bacteria. Journal of the Royal Society Interface.
193. Niedermayr A., Köhler S.J., Dietzel M. Impacts of aqueous carbonate accumulation rate, magnesium and polyaspartic acid on calcium carbonate formation (6-40°C). Chem. Geol. 2013, 340:105-120.
194. Noghabi K.A., Zahiri H.S., Yoon S.C. The production of a cold-induced extracellular biopolymer by Pseudomonas fluorescens BM07 under various growth conditions and its role for heavy metals absorption. Process Biochem. 2007, 42:847-855.
195. 3 (aragonite-like) by cyanobacteria: a STXM study of the influence of EPS on the nucleation process. Geochim. Cosmochim. Acta 2009, 73(14):4180-4198.
196. Omoike A., Chorover J. Spectroscopic study of extracellular polymeric substances from Bacillus subtilis: aqueous chemistry and adsorption effects. Biomacromolecules 2004, 5:1219-1230.
197. Omoike A., Chorover J. Adsorption to goethite of extracellular polymeric substances from Bacillus subtilis. Geochim. Cosmochim. Acta 2006, 70:827-828.
198. Omoike A., Chorover J., Kwon K.D., Kubicki J.D. Adhesion of bacterial exopolymers to a-FeOOH: inner-sphere complexation of phosphodiester groups. Langmuir 2004, 20:11108-11114.
199. Orange F., Westall F., Disnar J.-R., Prieur D., Bienvenu N., Le Romancer M., Défarge C.H. Experimental silicification of the extremophilic Archaea Pyrococcus abyssi and Methanocaldococcus jannaschii: applications in the search for evidence of life in early Earth and extraterrestrial rocks. Geobiology 2009, 7:403-418.
200. Ozturk S., Aslim B., Suluder Z. Evaluation of chromium(VI) removal behaviour by two isolates of Synechocystis sp. in terms of exopolysaccharide (EPS) production and monomer composition. Bioresour. Technol. 2009, 100:5588-5593.
201. Ozturk S., Aslim B., Suludere Z., Tan S. Metal removal of cyanobacterial exopolysaccharides by uronic acid content and monosaccharide composition. Carbohydr. Polym. 2014, 101:265-271.
202. Paulo C., Dittrich M. 2D Raman spectroscopy study of dolomite and cyanobacterial extracellular polymeric substances from Khor Al-Adaid sabkha (Qatar). J. Raman Spectrosc. 2013, 44:1563-1569.
203. Perry T.D., Klepac-Ceraj V., Zhang X.V., McNamara C.J., Polz M.F., Martin S.T., Berke N., Mitchell R. Binding of harvested bacterial exopolymers to the surface of calcite. Environ. Sci. Technol. 2005, 39:8770-8775.
204. Planchon M., Jittawuttipoka T., Cassier-Chauvat C., Guyot F., Chauvat F., Spalla O. Influence of exopolysaccharides on the electrophoretic properties of the model cyanobacterium Synechocystis. Colloids Surf. B: Biointerfaces 2013, 110:171-177.
205. Plette A.C.C., Benedetti M.F., van Riemsdijk W.H. Competitive binding of protons, calcium, cadmium and zinc to isolated cell walls of a gram-positive soil bacterium. Environ. Sci. Technol. 1996, 30:1902-1910.
206. 6] from mine waters caused by photosynthetic microorganisms. Appl. Environ. Microbiol. 2000, 66:5092-5098.
207. Puzon G.J., Roberts A.G., Kramer D.M., Xun L. Formation of soluble organo-chromium(III) complexes after chromate reduction in the presence of cellular organics. Environ. Sci. Technol. 2005, 39:2811-2817.
208. Quigg A., Chin W.-C., Chen C.-S., Zhang S., Jiang Y., Miao A.-J., Schwehr K.A., Xu C., Santschi P.H. Direct and indirect toxic effects of engineered nanoparticles on algae: role of natural organic matter. ACS Sustain. Chem. Eng. 2013, 1:686-702.
209. 234Th complexation in marine organic matter. Limnol. Oceanogr. 2002, 47(2):367-377.
210. 2+ adsorption characteristics of capsular polysaccharides extracted from a cyanobacterium Gloeocapsa gelatinosa. Water Res. 2006, 40:3759-3766.
211. Rijnaarts H.H.M., Norde W., Bouwer E.J., Lyklema J., Zehnder A.J.B. Reversibility and mechanism of bacterial adhesion. Colloids Surf. B: Biointerfaces 1995, 4(1):5-22.
212. Rijnaarts H.H.M., Norde W., Bouwer E.J., Lyklema J., Zehnder A.J.B. The isoelectric point of bacteria as an indicator for the presence of cell surface polymers that inhibit adhesion. Colloids Surf. B: Biointerfaces 1995, 4(4):191-197.
213. Rivadeneyra M.A., Agustín Martín-Algarra A., Sánchez-Román M., Antonio Sánchez-Navas A., Martín-Ramos J.D. Amorphous Ca-phosphate precursors for Ca-carbonate biominerals mediated by Chromohalobacter marismortui. ISME J. 2010, 4:922-932.
214. Roberts K.A., Santschi P.H., Honeyman B.D. Pu(V) reduction and enhancement of particle-water partitioning by exopolymeric substances. Radiochim. Acta 2008, 96(9-11):739-745.
215. Rodriguez-Navarro C., Jimenez-Lopez C., Rodriguez-Navarro A., Gonzalez-Munoz M.T., Rodriguez-Gallego M. Bacterially mediated mineralisation of vaterite. Geochim. Cosmochim. Acta 2007, 71:1197-1213.
216. Rohwerder T., Gehrke T., Kinzler K., Sand W. Bioleaching review part A: progress in bioleaching: fundamentals and mechanisms of bacterial metal sulfide oxidation. Appl. Microbiol. Biotechnol. 2003, 63:239-248.
217. Salehizadeh H., Shojaosadati S.A. Removal of metal ions from aqueous solution by polysaccharide produced from Bacillus firmus. Water Res. 2003, 37:4231-4235.
218. Sanchez-Navas A., Martin-Algarra A. Genesis of apatite in phosphate stromatolites. Eur. J. Mineral. 2001, 13(2):361-376.
219. Sanchez-Roman M., Vasconcelos C., Schmid T., Dittrich M., McKenzie J.A., Zenobi R., Rivadeneyra M.A. Aerobic microbial dolomite at the nanometer scale: implications for the geologic record. Geology 2008, 36:879-882.
220. 2+ ions. FEMS Microbiol. Ecol. 2007, 61:273-281.
221. Sand W., Gehrke T. Extracellular polymeric substances mediate bioleaching/biocorrosion via interfacial processes involving iron(III) ions and acidophilic bacteria. Res. Microbiol. 2006, 157:49-56.
222. Santschi P.H., Hung C.-C., Guo L., Pinckney J., Schultz G., Alvarado-Quiroz N., Walsh I. Control of acid polysaccharide production, and 234Th and POC export fluxes by marine organisms. Geophys. Res. Lett. 2003, 30(2). 10.1029/2002GL016046.
223. Schlekat C., Decho A.W., Chandler G.T. Sorption of cadmium to bacterial extracellular polymeric sediment coatings under estuarine conditions. Environ. Toxicol. Chem. 1998, 17:1867-1874.
224. Schultze-Lam S., Fortin D., Davis B.S., Beveridge T.J. Mineralization of bacterial surfaces. Chem. Geol. 1996, 132(1-4):171-181.
225. Sharma P.K., Das A., Hanumantha R., Forssberg K.S.E. Surface characterisation of Acidithiobacillus ferrooxidans cells grown under different conditions. Hydrometallurgy 2003, 71:285-292.
226. Sheng L., Fein J.B. Uranium adsorption by Shewanella oneidensis MR-1 as a function of dissolved inorganic carbon concentration. Chem. Geol. 2013, 358:15-22.
227. Sheng G.-P., Yu H.-Q., Li X.-Y. Extracellular polymeric substances (EPS) of microbial aggregates in biological wastewater treatment systems: a review. Biotechnol. Adv. 2010, 28:882-894.
228. 2+ and extracellular polymeric substances (EPS) of sludge. Chemosphere 2013, 93:1436-1441.
229. Slaveykova V.I., Parthasarathy N., Dedieu K., Toescher D. Role of extracellular compounds in Cd-sequestration relative to Cd uptake by bacterium Sinorhizobium meliloti. Environ. Pollut. 2010, 158:2561-2565.
230. Small T.D., Warren L.A., Ferris F.G. Influence of ionic strength on strontium sorption to bacteria, Fe(III) oxide and composite bacteria-Fe(III) oxide surfaces. Appl. Geochem. 2001, 16:939-946.
231. Souza-Egipsy V., Garcia del Cura M.A., Ascaso C., De Los Rios A., Wiezchos J., Gonzalez-Martin J.A. Interaction between calcite and phosphorus in biomineralization processes in tufa carbonates. Int. Rev. Hydrobiol. 2006, 91(3):222-241.
232. Stadler R., Fuerbetha W., Harneit K., Grooters M., Woellbrink M., Sand W. First evaluation of the applicability of microbial extracellular polymeric substances for corrosion protection of metal substrates. Electrochim. Acta 2008, 54:91-99.
233. Stal L.J. Microphytobenthos, their extracellular polymeric substances, and the morphogenesis of intertidal sediments. Geomicrobiol J. 2003, 20(5):463-478.
234. Stal L.J. Microphytobenthos as a biogeomorphological force in intertidal sediment stabilization. Ecol. Eng. 2010, 36(2):236-245.
235. Strathmann M., Wingender J., Flemming H.-C. Application of fluorescently labelled lectins for the visualisation and biochemical characterisation of polysaccharides in biofilms of Pseudomonas aeruginosa. J. Microbiol. Methods 2002, 50:237-248.
236. Takahashi Y., Chatellier X., Hattori K.H., Kato K., Fortin D. Adsorption of rare earth elements onto bacterial cell walls and its implication for REE sorption onto natural microbial mats. Chem. Geol. 2005, 219:53-67.
237. Taylor E.S., Lower S.K. Thickness and surface density of extracellular polymers on Acidithiobacillus ferrooxidans. Appl. Environ. Microbiol. 2008, 74:309-311.
238. Taylor J.D., McKew B.A., Kuhl A., McGenity T.J., Underwood G.J.C. Microphytobenthic extracellular polymeric substances (EPS) in intertidal sediments fuel both generalist and specialist EPS-degrading bacteria. Limnol. Oceanogr. 2013, 58(4):1463-1480.
239. Taylor S.W., Milly P.C.D., Jaffe P.R. Biofilm growth and the related changes in the physical properties of a porous medium. 2. Permeability. Water Resour. Res. 1990, 26:2161-2169.
240. Tazaki K., Okuno M., Furumoto M., Watanabe H. Biomineralisation of pisoliths in hot springs. Mater. Sci. Eng. C 2006, 26:617-623.
241. 3 surfaces. Geochim. Cosmochim. Acta 2003, 67:3547-3557.
242. Teschke O. Volume of extracellular polymeric substance coverage of individual Acidithiobacillus ferrooxidans bacterium measured by atomic force microscopy. Microsc. Res. Tech. 2005, 67:312-316.
243. Tian L., Xu S., Hutchins W.C., Yang C.-H., Li J. Impact of the exopolysaccharides Pel and Psl on the initial adhesion of Pseudomonas aeruginosa to sand. Biofouling 2014, 30(2):213-222.
244. Tobler D.J., Stefánsson A., Benning L.G. In-situ grown silica sinters in Icelandic geothermal areas. Geobiology 2008, 6:481-502.
245. Toner B., Manceau A., Marcus M.A., Millet D.B., Sposito G. Zinc sorption by a bacterial biofilm. Environ. Sci. Technol. 2005, 39:8288-8294.
246. Tong H., Ma W., Wang L., Wan P., Hu J., Cao L. Control over the crystal phase, shape, size and aggregation of calcium carbonate via a l-aspartic acid inducing process. Biomaterials 2004, 25:3923-3929.
247. 3 morphology and polymorphism. Chem. Geol. 2009, 262(3-4):138-146.
248. Tourney J., Ngwenya B.T. The effect of ionic strength on the electrophoretic mobility and protonation constants of an EPS-producing bacterial strain. J. Colloid Interface Sci. 2010, 348:348-354.
249. Tourney J., Ngwenya B.T., Mosselmans J.W., Tetley L., Cowie G.L. The effect of extracellular polymers (EPS) on the proton adsorption characteristics of the thermophile Bacillus licheniformis S-86. Chem. Geol. 2008, 247:1-15.
250. Tourney J., Ngwenya B.T., Mosselmans J.F.W., Magennis M. Physical and chemical effects of extracellular polymers (EPS) on Zn adsorption to Bacillus licheniformis S-86. J. Colloid Interface Sci. 2009, 337:381-389.
251. Tripathi S., Champagne D., Tufenkji N. Transport behaviour of selected nanoparticles with different surface coatings in granular porous media coated with Pseudomonas aeruginosa biofilm. Environ. Sci. Technol. 2012, 46:6942-6949.
252. Tsuneda T., Jung J., Hayashi H., Aikawa H., Hirata A., Sasaki H. Influence of extracellular polymers on electrokinetic properties of heterotrophic bacterial cells examined by soft particle electrophoresis theory. Colloids Surf. B: Biointerfaces 2003, 29:181-188.
253. Tsuruta T. Selective accumulation of light or heavy rare earth elements using gram-positive bacteria. Colloids Surf. B: Biointerfaces 2006, 52:117-122.
254. Ueshima M., Ginn B.R., Haack E.A., Szymanowski J.E.S. Cd adsorption onto Pseudomonas putida in the presence and absence of extracellular polymeric substances. Geochim. Cosmochim. Acta 2008, 72:5885-5895.
255. Underwood G.J.C., Fietz S., Papadimitriou S., Thomas D.N., Dieckmann G.S. Distribution and composition of dissolved extracellular polymeric substances (EPS) in Antarctic sea ice. Mar. Ecol. Prog. Ser. 2010, 404:1-19.
256. Van Hullebusch E.D., Zandvoort M.H., Lens P.N.L. Metal immobilisation by biofilms: mechanisms and analytical tools. Rev. Environ. Sci. Biotechnol. 2003, 2:9-33.
257. Vandevivere P., Baveye P. Saturated hydraulic conductivity reduction caused by aerobic bacteria. Soil Sci. Soc. Am. J. 1992, 56:1-13.
258. Vandevivere P., Baveye P. Effect of bacterial extracellular polymers on the saturated hydraulic conductivity of sand columns. Appl. Environ. Microbiol. 1992, 58:1690-1698.
259. Vandevivere P., Welch S.A., Ullman W.J., Kirchman D.L. Enhanced dissolution of silicate minerals by bacteria at near-neutral pH. Microb. Ecol. 1994, 27:241-251.
260. Vasanthakumar B., Ravishankar H., Subramanian S. Microbially induced selective flotation of sphalerite from galena using mineral-adapted strains of Bacillus megaterium. Colloids Surf. B: Biointerfaces 2013, 112:279-286.
261. Vignaga E., Haynes H., Sloan W.T. Quantifying the tensile strength of microbial mats grown over noncohesive sediments. Biotechnol. Bioeng. 2012, 109(5):1155-1164.
262. Vignaga E., Sloan D.M., Luo X., Haynes H., Phoenix V.R., Sloan W.T. Erosion of biofilm-bound fluvial sediments. Nat. Geosci. 2013, 6(9):770-774.
263. Walker S.L., Redman J.A., Elimelech M. Role of cell surface lipopolysaccharides in Escherichia coli K12 adhesion and transport. Langmuir 2004, 20(18):7736-7746.
264. Wei X., Fang L., Cai P., Huang Q., Chen H., Liang W., Rong X. Influence of extracellular polymeric substances (EPS) on Cd adsorption by bacteria. Environ. Pollut. 2011, 159:1369-1374.
265. Welch S.A., Vandevivere P. Effect of microbial and other naturally occurring polymers on mineral dissolution. Geomicrobiol J. 1994, 12:227-238.
266. Wightman P.G., Fein J.B. Ternary interactions in a humic acid-Cd-bacteria system. Chem. Geol. 2001, 180(1-4):55-65.
267. Wightman P.G., Fein J.B., Wesolowski D.J., Phelps T.J., Benezeth P., Palmer D.A. Measurement of bacterial surface protonation constants for two species at elevated temperatures. Geochim. Cosmochim. Acta 2001, 65:3657-3669.
268. Wolfaardt G.M., Lawrence J.R., Robarts R.D., Caldwell D.E. In situ characterisation of biofilm exopolymers involved in the accumulation of chlorinated organics. Microb. Ecol. 1998, 35:213-223.
269. Xiao Y., Wiesner M.R. Transport and retention of selected engineered nanoparticles by porous media in the presence of a biofilm. Environ. Sci. Technol. 2013, 47:2246-2253.
270. Xu C., Santschi P.H., Schwehr K.A., Hung C. Optimised isolation procedure for obtaining strongly actinide binding exopolymeric substances (EPS) from two bacteria (Sagitulla stellata and Pseudomonas fluorescens Biovar II). Bioresour. Technol. 2009, 100:6010-6021.
271. Xu C., Zhang S., Chuang C.-y., Miller E.J., Schwehr K.A., Santschi P.H. Chemical composition and relative hydrophobicity of microbial exopolymeric substances (EPS) isolated by anion exchange chromatography and their actinide-binding affinities. Mar. Chem. 2011, 126:27-36.
272. Yang S., Ngwenya B.T., Butler I.B., Kurlanda H., Elphick S.C. Coupled interactions between metals and bacterial biofilms in porous media: implications for biofilm stability, fluid flow and metal transport. Chem. Geol. 2013, 337-338:20-29.
273. Yee N., Fein J. Cd adsorption onto bacterial surfaces: a universal adsorption edge?. Geochim. Cosmochim. Acta 2001, 65:2037-2042.
274. Yee N., Phoenix V.R., Konhauser K.O., Benning L.G., Ferris F.G. The effect of cyanobacteria on silica precipitation at neutral pH: implications for bacterial silicification in geothermal hot springs. Chem. Geol. 2003, 199:83-90.
275. Yu R.-L., Ou Y., Tan J.-X., Wu F.-D., Sun J., Miao L., Zhong D.-L. Effect of EPS on adhesion of Acidithiobacillus ferrooxidans on chalcopyrite and pyrite mineral surfaces. Trans. Nonferrous Metals Soc. China 2011, 21:407-412.
276. Zarasvand K.A., Rai V.R. Microorganisms: induction and inhibition of corrosion in metals. Int. Biodeterior. Biodegradation 2014, 87:66-74.
277. Zetsche E., Paterson D.M., Lumsdon D.G., Witte U. Temporal variation in the sediment permeability of an intertidal sandflat. Mar. Ecol. Prog. Ser. 2011, 441:49-63.
278. Zhang D., Pan X., Mostofa K.M.G., Chen X., Mu G., Wu F., Liu J., Song W., Yang J., Liu Y., Fu Q. Complexation between Hg(II) and biofilm extracellular polymeric substances: an application of fluorescence spectroscopy. J. Hazard. Mater. 2010, 175:359-365.
279. Zhang F., Xu H., Konishi H., Shelobolina E.S., Roden E.E. Polysaccharide-catalysed nucleation and growth of disordered dolomite: a potential precursor of sedimentary dolomite. Am. Mineral. 2012, 97:556-567.
280. Zhang F., Xu H., Shelobolina E.S., Konishi H., Converse B., Shen Z., Roden E.E. The catalytic effect of bound extracellular polymeric substances excreted by anaerobic microorganisms on Ca-Mg carbonate precipitation: Implications for the "dolomite problem". Am. Mineral. 2014, (in press).
281. Zhang S.J., Jiang Y.L., Chen C.-S., Spurgin J., Schwehr K.A., Quigg A., Chin W.-C., Santschi P.H. Aggregation and dissolution of quantum dots in marine environments: importance of extracellular polymeric substances. Environ. Sci. Technol. 2012, 46:8764-8772.
282. Zhang S., Jiang Y., Chen C.-S., Creeley D., Schwehr K.A., Quigg A., Chin W.-C., Santschi P.H. Ameliorating effects of extracellular polymeric substances excreted by Thalassiosira pseudonana on algal toxicity of CdSe quantum dots. Aquat. Toxicol. 2013, 126:214-223.
283. Zheng Y., Fang X., Ye Z., Li Y., Cai W. Biosorption of Cu(II) on extracellular polymers from Bacillus sp. F19. J. Environ. Sci. 2008, 20:1288-1293.
284. Zhu J.-Y., Yang P., Li B.-M., Zhang J.-X., Huang Q.-X. Microcalorimetric studies of interaction between extracellular polymeric substance and sulphide minerals. Trans. Nonferrous Metals Soc. China 2008, 18:1439-1442.
285. Zippel B., Neu T.R. Characterization of glycoconjugates of extracellular polymeric substances in tufa-associated biofilms by using fluorescence lectin-binding analysis. Appl. Environ. Microbiol. 2011, 77(2):505-516.
286. Zisu B., Shah N.P. Effects of pH, temperature, supplementation with whey protein concentrate, and adjunct cultures on the production of exopolysaccharides by Streptococcus thermophilus 1275. J. Dairy Sci. 2003, 86:3405-3415.