Calcium carbonate precipitation by cyanobacterial polysaccharides

Geological Society Special Publication

Volumn 336, Issue , 2010, Pages 51-63

  Dittrich, M ^a   Sibler, S ^a  

^a SWISS FEDERAL INSTITUTE OF TECHNOLOGY   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

AUTOTROPHY; CALCIUM CARBONATE; CYANOBACTERIUM; FRESHWATER ECOSYSTEM; MINERALOGY; MORPHOLOGY; PH; POLYSACCHARIDE; PRECIPITATION (CHEMISTRY);

BACTERIA (MICROORGANISMS); CYANOBACTERIA; SYNECHOCOCCUS;

EID: 77956030158     PISSN: 03058719     EISSN: None     Source Type: Book Series    
DOI: 10.1144/SP336.4     Document Type: Article

References (68)

1. ADAV, S. S. & LEE, D.-J. 2008. Extraction of extracellular polymeric substances from aerobic granule with compact interior structure. Journal of Hazardous Materials, 154, 1120-1126.
2. AGAWIN, N. S. R., DUARTE, C. M. & AGUSTI, S. 2000. Nutrient and temperature control of the contribution of picoplankton to phytoplankton biomass and production. Limnology and Oceanography, 3, 591-600.
3. ARP, G., REIMER, A. & REITNER, J. 2003. Microbialite formation in seawater of increased alkalinity, satonda crater lake, indonesia. Journal of Sedimentary Research, 73, 105-127.
4. BECKER, S., SINGH, A. K., POSTIUS, C., BOGER, P. & ERNST, A. 2004. Genetic diversity and distribution of periphytic Synechococcus spp. in Biofilms and Picoplankton of Lake Constance. FEMS Microbiology Ecology, 49, 181-190.
5. BEECH, I. B. & TAPPER, R. C. 1999. Exopolymers of sulphate-reducing bacteria. In: WINGENDER, J., NEU, T. R. & FLEMMING, H.-C. (ed.) Microbial extracellular polymeric substances: Characterization, structure, and function. Spinger, Berlin, Heidelberg, New York, 119-127.
6. BELL, T.&KALFF, J. 2001. The contribution of the picophytoplankton in marine and freshwater systems of different trophic status and depth. Limnology and Oceanography, 46, 1243-1248.
7. BHASKAR, P. V. & BHOSLE, N. B. 2005. Microbial extracellular polymeric substances in marine biogeochemical processes. Current Science, 88, 45-53.
8. BIRD, C.&WYMAN, M. 2003. Nitrate/nitrite assimilation system of the marine picoplanktonic cyanobacterium synechococcus sp strain wh 8103: effect of nitrogen source and availability on gene expression. Applied and Environmental Microbiology, 69, 7009-7018.
9. BLASCHEK, W. 1991. Isolierung und analytik von polysacchariden. In: FRANZ, G. (ed.) Polysaccharide. Springer-Verlag, New York.
10. BORROK, D., TURNER, B. F. & FEIN, A. B. 2005. A universal surface complexation framework for modeling proton binding onto bacterial surfaces in geologic settings. American Journal of Science, 305, 826-853.
11. BOSAK, T. &NEWMAN, D. K. 2003. Microbial nucleation of calcium carbonate in the precambrian. Geology, 31, 577-580.
12. BOSAK, T. & NEWMAN, D. K. 2005. Microbial kinetic controls on calcite morphology in supersaturated solutions. Journal of Sedimentary Research, 75, 190-199.
13. BRAISSANT, O., CAILLEAU, G., DUPRAZ, C. & VERRECCHIA, A. P. 2003. Bacterially induced mineralization of calcium carbonate in terrestrial environments: The role of exopolysaccharides and amino acids. Journal of Sedimentary Research, 73, 485-490.
14. BRAISSANT, O., DECHO, A. W., DUPRAZ, C., GLUNK, C., PRZEKOP, K. M. & VISSCHER, P. T. 2007. Exopolymeric substances of sulfate-reducing bacteria: interactions with calcium at alkaline pH and implication for formation of carbonate minerals. Geobiology, 5, 401-411.
15. BRASSARD, P., KRAMER, J. R. & COLLINS, P. V. 1990. Binding site analysis using linear programming. Environmental Science & Technology, 24, 195-201.
16. CERNIK, M., BORKOVEC, M. & WESTALL, J. C. 1995. Regularized least-squares methods for the calculation of discrete and continuous affinity distributions for heterogeneuos sorbents. Environmental Science & Technology, 29, 413-425.
17. 2+ complexation. Enzyme and Microbial Technology, 38, 246-252.
18. COMTE, S., GUIBAUD, G. & BAUDU, M. 2006b. Relations between extraction protocols for activated sludge extracellular polymeric substances (eps) and eps complexation properties part I. Comparison of the efficiency of eight eps extraction methods. Enzyme and Microbial Technology, 38, 237-245.
19. COMTE, S., GULBAUD, G. & BAUDU, M. 2006c. Biosorption properties of extracellular polymeric substances (eps) resulting from activated sludge according to their type: Soluble or bound. Process Biochemistry, 41, 815-823.
20. COMTE, S., GUIBAUD, G. & BAUDU, M. 2007. Effect of extraction method on eps from activated sludge: an hpsec investigation. Journal of Hazardous Materials, 140, 129-137.
21. COX, J. S., SMITH, D. S.,WARREN, L. A. & FERRIS, F. G. 1999. Characterizing heterogeneous bacterial surface functional groups using discrete affinity spectra for proton binding. Environmental Science and Technology, 33, 4514-5421.
22. DE PHILIPPIS, R., SILI, C., PAPERI, R. & VINCENZINI, M. 2001. Exopolysaccharide-producing cyanobacteria and their possible exploitation: a review. Journal of Applied Phycology, 13, 293-299.
23. DE WINDER, B., STAATS, N., STAL, L. J. & PATERSON, D. M. 1999. Carbohydrate secretion by phototrophic communities in tidal sediments. Journal of Sea Research, 42, 131-146.
24. DECHO, A. W. 1990. Microbial exopolymer secretions in ocean environments: their role(s) in food webs and marine processes. Oceanography and Marine Biology: An Annual Review, 28, 73-153.
25. DECHO, A. W. 2000. Microbial biofilms in intertidal systems: An overview. Continental Shelf Research, 20, 1257-1273.
26. DECHO, A. W., VISSCHER, P. T. & REID, R. P. 2005. Production and cycling of natural microbial exopolymers (eps) within a marine stromatolite. Palaeogeography Palaeoclimatology Palaeoecology, 219, 71-86.
27. DEPHILIPPIS, R., SILI, C., TASSINATO, G., VINCENZINI, M. & MATERASSI, R. 1991. Effects of growth conditions on exopolysaccharide production by cyanospira-capsulata. Bioresource Technology, 38, 101-104.
28. DITTRICH, M., KURZ, P.&WEHRLI, B. 2004. The role of autotrophic picocyanobacteria in calcite precipitation in an oligotrophic lake. Geomicrobiology Journal, 21, 45-53.
29. DITTRICH, M. & SIBLER, S. 2005. Cell surface groups of two picocyanobacteria strains studied by zeta potential investigations, potentiometric titration, and infrared spectroscopy. Journal of Colloid and Interface Science, 286, 487-495.
30. DUPRAZ, C.&VISSCHER, P. T. 2005. Microbial lithification in marine stromatolites and hypersaline mats. Trends in Microbiology, 13, 429-438.
31. FERRIS, F. G. & BEVERIDGE, T. J. 1984. Binding of a paramagnetic metal cation to Escherichia coli k-12 outer membrane vesicles. FEMS Microbiology Letters, 24, 43-46.
32. FERRIS, F. G. & LOWSON, E. A. 1997. Ultrastructure and geochemistry of endolithic microorganisms in limestone of the Niagara Escarpment. Canadian Journal of Microbiology, 43, 211-219.
33. FERRIS, M. J., RUFF-ROBERTS, A. L., KOPCZYNSKI, E. D., BATESON, M. M. &WARD, D. M. 1996. Enrichment culture and microscopy conceal diverse thermophilic synechococcus populations in a single hot spring microbial mat habitat. Applied and Environmental Microbiology, 62, 1045-1050.
34. FOWLE, D. A. & FEIN, J. B. 2000. Experimental measurements of the reversibility of metal-bacteria adsorption reactions. Chemical Geology, 168, 27-36.
35. GARCIA-PICHEL, F., NUBEL, U. & MUYZER, G. 1998. The phylogeny of unicellular, extremely halotolerant cyanobacteria. Archives of Microbiology, 169, 469-482.
36. HIRST, C. N., CYR, H. & JORDAN, I. A. 2003. Distribution of exopolymeric substances in the littoral sediments of an oligotrophic lake. Microbial Ecology, 46, 22-32.
37. HORNBACK, J. 1998. Organic chemistry. Brooks Cole Publishing Company, Pacific Grove, CA.
38. JIA, X. S., FURUMAI, H. & FANG, H. H. P. 1996. Extracellular polymers of hydrogen-utilizing methanogenic and sulfate-reducing sludges. Water Research, 30, 1439-1444.
39. 3 polymorphism. Journal of Crystal Growth, 240, 230-235.
40. KAWAGUCHI, T., SAYEGH, H.A. &DECHO, A. W. 2003. Development of an indirect competitive enzymelinked immunosorbent assay to detect extracellular polymeric substances (eps) secreted by the marine stromatolite-forming cyanobacteria, Schizothrix sp. Journal of Immunoassay & Immunochemistry, 24, 29-39.
41. KAZY, S. K., SAR, P.&D'SOUZA, S. F. 2008. Studies on uranium removal by the extracellular polysaccharide of a Pseudomonas aeruginosa strain. Bioremediation Journal, 12, 47-57.
42. KAZY, S. K., SAR, P., SEN, A. K., SINGH, S. P. & D'SOUZA, S. F. 2002. Extracellular polysaccharides of a copper-sensitive and a copper-resistant Pseudomonas aeruginosa strain: synthesis, chemical nature and copper binding. World Journal of Microbiology & Biotechnology, 18, 583-588.
43. LEE, B. D., APEL, W. A. & WALTON, M. R. 2004. Screening of cyanobacterial species for calcification. Biotechnology Progress, 20, 1345-1351.
44. LIJOUR, Y., GENTRIC, E., DESLANDES, E. & GUEZENNEC, J. 1994. Estimation of the sulfate content of hydrothermal vent bacterial polysaccharides by fourier-transform infrared-spectroscopy. Analytical Biochemistry, 220, 244-248.
45. LIU, H.& FANG, H. H. P. 2002. Characterization of electrostatic binding sites of extracellular polymers by linear programming analysis of titration data. Biotechnology and Bioengineering, 80, 806-811.
46. LOVLEY, D. R. & COATES, J. D. 2000. Novel forms of anaerobic respiration of environmental relevance. Current Opinion in Microbiology, 3, 252-256.
47. a distribution method. Journal of Colloid and Interface Science, 253, 130-139.
48. MATA, J. A., BEJAR, V., BRESSOLLIER, P., TALLON, R., URDACI, M. C., QUESADA, E. & LLAMAS, I. 2008. Characterization of exopolysaccharides produced by three moderately halophilic bacteria belonging to the family alteromonadaceae. Journal of Applied Microbiology, 105, 521-528.
49. MERZ, M. 1992. The biology of carbonate precipitation by cyanobacteria. Facies, 26, 81-102.
50. MILLER, S.R. &CASTENHOLZ, R. W. 2000. Evolution of thermotolerance in hot spring cyanobacteria of the genus Synechococcus. Applied and Environmental Microbiology, 66, 4222-4229.
51. NICHOLS, P. D. & NICHOLS, C. A. M. 2008. Microbial signature lipid profiling and exopolysaccharides: Experiences initiated with Professor David C White and transported to Tasmania, Australia. Journal of Microbiological Methods, 74, 33-46.
52. NIELSEN, P. H. & JAHN, A. 1999. Extraction of eps. In: WINGENDER, J., NEU, T. R. & FLEMMING, H.-C. (eds) Microbial extracellular polymeric substances: Characterization, structure, and function. Springer, Berlin Heidelberg, 49-72.
53. PARIKH, A. &MADAMWAR, D. 2006. Partial characterization of extracellular polysaccharides from cyanobacteria. Bioresource Technology, 97, 1822-1827.
54. PENTECOST, A. 1991. Calcification processes in algae and cyanobacteria. In: RIDING, R. (ed.) Calcareous Algae and Stromatolites. Springer, Berlin, 3-20.
55. PHOENIX, V., MARTINEZ, R. E., KONHAUSER, K. O. & FERRIS, F. G. 2002. Characterization and implication of the cell surface reactivity of Calothrix sp. Strain KC97. Applied and Environmental Microbiology, 68, 4827-4834.
56. RIDING, R. 2000. Microbial carbonates: The geological record of calcified bacterial-algal mats and biofilms. Sedimentology, 47, 179-214.
57. ROBBINS, L. L. & BLACKWELDER, P. L. 1992. Biochemical and ultrastructural evidence for the origin of whiting: A biologically induced calcium carbonate precipitation mechanism. Geology, 20, 464-468.
58. ROCHAS, C., LAHAYE, M. & YAPHE, W. 1986. A new procedure for determining the heterogeneity of agar polymers in the cell-walls of Gracilaria spp (Gracilariaceae, Rhodophyta). Canadian Journal of Botany, 64(3), 579-585.
59. SCHULTZE-LAM, S., FORTIN, D., DAVIS, B. S. & BEVERIDGE, T. J. 1996. Mineralization of bacterial surfaces. Chemical Geology, 132, 171-181.
60. SHIRAISHI, F., BISSETT, A., DE BEER, D., REIMER, A. & ARP, G. 2008. Photosynthesis, respiration and exopolymer calcium-binding in biofilm calcification (Westerhfer and Deinschwanger Creek, Germany). Geomicrobiology Journal, 25, 83-94.
61. SOKOLOV, I., SMITH, D. S., HENDERSON, G. S., GORBY, Y. A. & FERRIS, F. G. 2001. Cell surface electrochemical heterogeneity of the Fe(iii)-reducing bacteria Shewanella putrefaciens. Environmental Science & Technology, 35, 341-347.
62. STOCKNER, J., CALLIERI, C. & CRONBERG, G. 2000. Picoplankton and other non-bloom-forming cyanobacteria in lakes. In: WHITTON, B. A. & POTTS, M. (eds) The Ecology of Cyanobacteria. Kluwer Academic Publishers, The Netherlands, 195-231.
63. STRATHMANN, M., GRIEBE, T. & FLEMMING, H.-C. 2000. Artificial biofilm model - a useful tool for biofilm research. Applied Microbiology and Biotechnology, 54, 231-237.
64. TOURNEY, J., NGWENYA, B. T., MOSSELMANS, J. W. F., TETLEY, L. & COWIE, G. L. 2008. The effect of extracellular polymers (eps) on the proton adsorption characteristics of the thermophile Bacillus licheniformis S-86. Chemical Geology, 247, 1-15.
65. TRICHET, J. &DEFARGE, C. 1995. Non-biologically supported organomineralization. Bulletin de l'Institute oceanographiqur, Monaco, 14, 203-236.
66. VISSCHER, P. T., BAUMGARTNER, L. K. ET AL. 2003. Dimethyl sulphide and methanethiol formation in microbial mats: Potential pathways for biogenic signatures. Environmental Microbiology, 5, 296-308.
67. WARD, D. M., FERRIS, M. J., NOLD, S. C. & BATESON, M. M. 1998. A natural view of microbial biodiversity within hot spring cyanobacterial mat communities. Microbiology and Molecular Biology Reviews, 62, 1353-1370.
68. WINGENDER, J., NEU, T. R. & FLEMMING, H.-C. 1999. Microbial extracellular polymeric substances: Characterization, structure, and function. Springer, Berlin, Heidelberg, New York.