-
1
-
-
80053019485
-
Regulation by small RNAs in bacteria: Expanding frontiers
-
PMID:21925377
-
Storz G, Vogel J, Wassarman KM. Regulation by small RNAs in bacteria: expanding frontiers. Mol Cell 2011; 43:880-91; PMID:21925377; http://dx.doi.org/10.1016/j.molcel.2011.08.022
-
(2011)
Mol Cell
, vol.43
, pp. 880-891
-
-
Storz, G.1
Vogel, J.2
Wassarman, K.M.3
-
2
-
-
67349192582
-
Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level
-
PMID:19366629
-
Papenfort K, Vogel J. Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level. Res Microbiol 2009; 160:278-87; PMID:19366629; http://dx.doi.org/10.1016/j.resmic.2009.03.004
-
(2009)
Res Microbiol
, vol.160
, pp. 278-287
-
-
Papenfort, K.1
Vogel, J.2
-
3
-
-
84867577054
-
An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs
-
PMID:22922465
-
Chao Y, Papenfort K, Reinhardt R, Sharma CM, Vogel J. An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs. EMBO J 2012; 31:4005-19; PMID:22922465; http://dx.doi.org/10.1038/ emboj.2012.229
-
(2012)
EMBO J
, vol.31
, pp. 4005-4019
-
-
Chao, Y.1
Papenfort, K.2
Reinhardt, R.3
Sharma, C.M.4
Vogel, J.5
-
4
-
-
84877825351
-
Regulatory RNAs and target mRNA decay in prokaryotes
-
PMID:23500183
-
Lalaouna D, Simoneau-Roy M, Lafontaine D, Massé E. Regulatory RNAs and target mRNA decay in prokaryotes. Biochim Biophys Acta 2013; 1829:742-7; PMID:23500183; http://dx.doi.org/10.1016/j.bbagrm.2013.02.013
-
(2013)
Biochim Biophys Acta
, vol.1829
, pp. 742-747
-
-
Lalaouna, D.1
Simoneau-Roy, M.2
Lafontaine, D.3
Massé, E.4
-
5
-
-
8444229753
-
Strategies for RNA folding and assembly
-
PMID:15520810
-
Schroeder R, Barta A, Semrad K. Strategies for RNA folding and assembly. Nat Rev Mol Cell Biol 2004; 5:908-19; PMID:15520810; http://dx.doi.org/10.1038/ nrm1497
-
(2004)
Nat Rev Mol Cell Biol
, vol.5
, pp. 908-919
-
-
Schroeder, R.1
Barta, A.2
Semrad, K.3
-
6
-
-
84879014020
-
Cycling of RNAs on Hfq
-
PMID:23466677
-
Wagner EGH. Cycling of RNAs on Hfq. RNA Biol 2013; 10:619-26; PMID:23466677; http://dx.doi.org/10.4161/rna.24044
-
(2013)
RNA Biol
, vol.10
, pp. 619-626
-
-
Wagner, E.G.H.1
-
7
-
-
50649097486
-
The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA
-
PMID:18658123
-
Soper TJ, Woodson SA. The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA. RNA 2008; 14:1907-17; PMID:18658123; http://dx.doi.org/10.1261/rna.1110608
-
(2008)
RNA
, vol.14
, pp. 1907-1917
-
-
Soper, T.J.1
Woodson, S.A.2
-
8
-
-
77958563236
-
An upstream Hfq binding site in the fhlA mRNA leader region facilitates the OxyS-fhlA interaction
-
PMID:20927406
-
Salim NN, Feig AL. An upstream Hfq binding site in the fhlA mRNA leader region facilitates the OxyS-fhlA interaction. PLoS One 2010; 5:1-11; PMID:20927406; http://dx.doi.org/10.1371/journal.pone.0013028
-
(2010)
PLoS One
, vol.5
, pp. 1-11
-
-
Salim, N.N.1
Feig, A.L.2
-
9
-
-
77954378224
-
Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts
-
PMID:20348540
-
Lorenz C, Gesell T, Zimmermann B, Schoeberl U, Bilusic I, Rajkowitsch L, Waldsich C, von Haeseler A, Schroeder R. Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts. Nucleic Acids Res 2010; 38:3794-808; PMID:20348540; http://dx.doi.org/10.1093/nar/gkq032
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 3794-3808
-
-
Lorenz, C.1
Gesell, T.2
Zimmermann, B.3
Schoeberl, U.4
Bilusic, I.5
Rajkowitsch, L.6
Waldsich, C.7
Von Haeseler, A.8
Schroeder, R.9
-
10
-
-
79958047291
-
cis-antisense RNA, another level of gene regulation in bacteria
-
PMID:21646430
-
Georg J, Hess WR. cis-antisense RNA, another level of gene regulation in bacteria. Microbiol Mol Biol Rev 2011; 75:286-300; PMID:21646430; http://dx.doi.org/10.1128/MMBR.00032-10
-
(2011)
Microbiol Mol Biol Rev
, vol.75
, pp. 286-300
-
-
Georg, J.1
Hess, W.R.2
-
11
-
-
78449301921
-
Widespread antisense transcription in Escherichia coli
-
PMID:20689751
-
Dornenburg JE, Devita AM, Palumbo MJ, Wade JT. Widespread antisense transcription in Escherichia coli. MBio 2010; 1:1-4; PMID:20689751; http://dx.doi.org/10.1128/mBio.00024-10
-
(2010)
MBio
, vol.1
, pp. 1-4
-
-
Dornenburg, J.E.1
Devita, A.M.2
Palumbo, M.J.3
Wade, J.T.4
-
12
-
-
84865728811
-
Antisense transcription is pervasive but rarely conserved in enteric bacteria
-
PMID:22872780
-
Raghavan R, Sloan DB, Ochman H. Antisense transcription is pervasive but rarely conserved in enteric bacteria. MBio 2012; 3; PMID:22872780; http://dx.doi.org/10.1128/mBio.00156-12
-
(2012)
MBio
, vol.3
-
-
Raghavan, R.1
Sloan, D.B.2
Ochman, H.3
-
13
-
-
84896805416
-
The double-stranded transcriptome of Escherichia coli
-
PMID:24453212
-
Lybecker M, Zimmermann B, Bilusic I, Tukhtubaeva N, Schroeder R. The double-stranded transcriptome of Escherichia coli. Proc Natl Acad Sci U S A 2014; 111:3134-9; PMID:24453212; http://dx.doi.org/10.1073/pnas.1315974111
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. 3134-3139
-
-
Lybecker, M.1
Zimmermann, B.2
Bilusic, I.3
Tukhtubaeva, N.4
Schroeder, R.5
-
14
-
-
33745616103
-
Identification of small Hfq-binding RNAs in Listeria monocytogenes
-
PMID:16682563
-
Christiansen JK, Nielsen JS, Ebersbach T, Valentin-Hansen P, Søgaard-Andersen L, Kallipolitis BH. Identification of small Hfq-binding RNAs in Listeria monocytogenes. RNA 2006; 12:1383-96; PMID:16682563; http://dx.doi.org/10.1261/rna.49706
-
(2006)
RNA
, vol.12
, pp. 1383-1396
-
-
Christiansen, J.K.1
Nielsen, J.S.2
Ebersbach, T.3
Valentin-Hansen, P.4
Søgaard-Andersen, L.5
Kallipolitis, B.H.6
-
15
-
-
0141644746
-
Global analysis of small RNA and mRNA targets of Hfq
-
PMID:14622403
-
Zhang A, Wassarman KM, Rosenow C, Tjaden BC, Storz G, Gottesman S. Global analysis of small RNA and mRNA targets of Hfq. Mol Microbiol 2003; 50:1111-24; PMID:14622403; http://dx.doi.org/10.1046/j.1365-2958.2003.03734.x
-
(2003)
Mol Microbiol
, vol.50
, pp. 1111-1124
-
-
Zhang, A.1
Wassarman, K.M.2
Rosenow, C.3
Tjaden, B.C.4
Storz, G.5
Gottesman, S.6
-
16
-
-
50849105413
-
Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq
-
PMID:18725932
-
Sittka A, Lucchini S, Papenfort K, Sharma CM, Rolle K, Binnewies TT, Hinton JCD, Vogel J. Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq. PLoS Genet 2008; 4:e1000163; PMID:18725932; http://dx.doi.org/10.1371/journal.pgen.1000163
-
(2008)
PLoS Genet
, vol.4
-
-
Sittka, A.1
Lucchini, S.2
Papenfort, K.3
Sharma, C.M.4
Rolle, K.5
Binnewies, T.T.6
Hinton, J.C.D.7
Vogel, J.8
-
17
-
-
84874025965
-
Association of RNAs with Bacillus subtilis Hfq
-
PMID:23457461
-
Dambach M, Irnov I, Winkler WC. Association of RNAs with Bacillus subtilis Hfq. PLoS One 2013; 8:e55156; PMID:23457461; http://dx.doi.org/10.1371/ journal.pone.0055156
-
(2013)
PLoS One
, vol.8
-
-
Dambach, M.1
Irnov, I.2
Winkler, W.C.3
-
18
-
-
77953090678
-
Positive regulation by small RNAs and the role of Hfq
-
PMID:20457943
-
Soper T, Mandin P, Majdalani N, Gottesman S, Woodson SA. Positive regulation by small RNAs and the role of Hfq. Proc Natl Acad Sci U S A 2010; 107:9602-7; PMID:20457943; http://dx.doi.org/10.1073/pnas.1004435107
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 9602-9607
-
-
Soper, T.1
Mandin, P.2
Majdalani, N.3
Gottesman, S.4
Woodson, S.A.5
-
19
-
-
78651067735
-
Hfq binding at RhlB-recognition region of RNase E is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli
-
PMID:21219461
-
Ikeda Y, Yagi M, Morita T, Aiba H. Hfq binding at RhlB-recognition region of RNase E is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli. Mol Microbiol 2011; 79:419-32; PMID:21219461; http://dx.doi.org/10.1111/j.1365-2958.2010.07454.x
-
(2011)
Mol Microbiol
, vol.79
, pp. 419-432
-
-
Ikeda, Y.1
Yagi, M.2
Morita, T.3
Aiba, H.4
-
20
-
-
0242380640
-
Hfq affects the length and the frequency of short oligo(A) tails at the 3? End of Escherichia coli rpsO mRNAs
-
PMID:12853618
-
Le Derout J, Folichon M, Briani F, Dehò G, Régnier P, Hajnsdorf E. Hfq affects the length and the frequency of short oligo(A) tails at the 3? end of Escherichia coli rpsO mRNAs. Nucleic Acids Res 2003; 31:4017-23; PMID:12853618; http://dx.doi.org/10.1093/nar/gkg456
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 4017-4023
-
-
Le Derout, J.1
Folichon, M.2
Briani, F.3
Dehò, G.4
Régnier, P.5
Hajnsdorf, E.6
-
21
-
-
7044285063
-
The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli
-
PMID:15522076
-
Mohanty BK, Maples VF, Kushner SR. The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli. Mol Microbiol 2004; 54:905-20; PMID:15522076; http://dx.doi.org/10.1111/j.1365-2958.2004.04337.x
-
(2004)
Mol Microbiol
, vol.54
, pp. 905-920
-
-
Mohanty, B.K.1
Maples, V.F.2
Kushner, S.R.3
-
22
-
-
37849000163
-
Hfq stimulates the activity of the CCA-adding enzyme
-
PMID:17949481
-
Scheibe M, Bonin S, Hajnsdorf E, Betat H, Mörl M. Hfq stimulates the activity of the CCA-adding enzyme. BMC Mol Biol 2007; 8:92; PMID:17949481; http://dx.doi.org/10.1186/1471-2199-8-92
-
(2007)
BMC Mol Biol
, vol.8
, pp. 92
-
-
Scheibe, M.1
Bonin, S.2
Hajnsdorf, E.3
Betat, H.4
Mörl, M.5
-
23
-
-
0037709369
-
Interaction of Escherichia coli RNA polymerase with the ribosomal protein S1 and the Sm-like ATPase Hfq
-
PMID:12834354
-
Sukhodolets MV, Garges S. Interaction of Escherichia coli RNA polymerase with the ribosomal protein S1 and the Sm-like ATPase Hfq. Biochemistry 2003; 42:8022-34; PMID:12834354; http://dx.doi.org/10.1021/bi020638i
-
(2003)
Biochemistry
, vol.42
, pp. 8022-8034
-
-
Sukhodolets, M.V.1
Garges, S.2
-
24
-
-
80052526246
-
Genome-wide detection of novel regulatory RNAs in E. coli
-
PMID:21665928
-
Raghavan R, Groisman EA, Ochman H. Genome-wide detection of novel regulatory RNAs in E. coli. Genome Res 2011; 21:1487-97; PMID:21665928; http://dx.doi.org/10.1101/gr.119370.110
-
(2011)
Genome Res
, vol.21
, pp. 1487-1497
-
-
Raghavan, R.1
Groisman, E.A.2
Ochman, H.3
-
25
-
-
70449477656
-
Next generation software for functional trend analysis
-
PMID:19717575
-
Berriz GF, Beaver JE, Cenik C, Tasan M, Roth FP. Next generation software for functional trend analysis. Bioinformatics 2009; 25:3043-4; PMID:19717575; http://dx.doi.org/10.1093/bioinformatics/btp498
-
(2009)
Bioinformatics
, vol.25
, pp. 3043-3044
-
-
Berriz, G.F.1
Beaver, J.E.2
Cenik, C.3
Tasan, M.4
Roth, F.P.5
-
26
-
-
0035395606
-
Identification of novel small RNAs using comparative genomics and microarrays
-
PMID:11445539
-
Wassarman KM, Repoila F, Rosenow C, Storz G, Gottesman S. Identification of novel small RNAs using comparative genomics and microarrays. Genes Dev 2001; 15:1637-51; PMID:11445539; http://dx.doi.org/10.1101/gad.901001
-
(2001)
Genes Dev
, vol.15
, pp. 1637-1651
-
-
Wassarman, K.M.1
Repoila, F.2
Rosenow, C.3
Storz, G.4
Gottesman, S.5
-
27
-
-
0344237410
-
RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria
-
PMID:14602901
-
Vogel J, Bartels V, Tang TH, Churakov G, Slagter-Jäger JG, Hüttenhofer A, Wagner EG. RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria. Nucleic Acids Res 2003; 31:6435-43; PMID:14602901; http://dx.doi.org/10.1093/nar/gkg867
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 6435-6443
-
-
Vogel, J.1
Bartels, V.2
Tang, T.H.3
Churakov, G.4
Slagter-Jäger, J.G.5
Hüttenhofer, A.6
Wagner, E.G.7
-
28
-
-
84875457350
-
Bacterial small RNA-based negative regulation: Hfq and its accomplices
-
PMID:23362267
-
De Lay N, Schu DJ, Gottesman S. Bacterial small RNA-based negative regulation: Hfq and its accomplices. J Biol Chem 2013; 288:7996-8003; PMID:23362267; http://dx.doi.org/10.1074/jbc.R112.441386
-
(2013)
J Biol Chem
, vol.288
, pp. 7996-8003
-
-
De Lay, N.1
Schu, D.J.2
Gottesman, S.3
-
29
-
-
84055200530
-
Genome-wide antisense transcription drives mRNA processing in bacteria
-
PMID:22123973
-
Lasa I, Toledo-Arana A, Dobin A, Villanueva M, de los Mozos IR, Vergara-Irigaray M, Segura V, Fagegaltier D, Penadés JR, Valle J, et al. Genome-wide antisense transcription drives mRNA processing in bacteria. Proc Natl Acad Sci U S A 2011; 108:20172-7; PMID:22123973; http://dx.doi.org/10.1073/ pnas.1113521108
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 20172-20177
-
-
Lasa, I.1
Toledo-Arana, A.2
Dobin, A.3
Villanueva, M.4
De Los Mozos, I.R.5
Vergara-Irigaray, M.6
Segura, V.7
Fagegaltier, D.8
Penadés, J.R.9
Valle, J.10
-
30
-
-
77958594047
-
Tn10/IS10 transposition is downregulated at the level of transposase expression by the RNA-binding protein Hfq
-
PMID:20815820
-
Ross JA, Wardle SJ, Haniford DB. Tn10/IS10 transposition is downregulated at the level of transposase expression by the RNA-binding protein Hfq. Mol Microbiol 2010; 78:607-21; PMID:20815820; http://dx.doi.org/10.1111/j.1365-2958. 2010.07359.x
-
(2010)
Mol Microbiol
, vol.78
, pp. 607-621
-
-
Ross, J.A.1
Wardle, S.J.2
Haniford, D.B.3
-
31
-
-
84876565196
-
Hfq restructures RNA-IN and RNA-OUT and facilitates antisense pairing in the Tn10/IS10 system
-
PMID:23510801
-
Ross JA, Ellis MJ, Hossain S, Haniford DB. Hfq restructures RNA-IN and RNA-OUT and facilitates antisense pairing in the Tn10/IS10 system. RNA 2013; 19:670-84; PMID:23510801; http://dx.doi.org/10.1261/rna.037747.112
-
(2013)
RNA
, vol.19
, pp. 670-684
-
-
Ross, J.A.1
Ellis, M.J.2
Hossain, S.3
Haniford, D.B.4
-
32
-
-
4944264194
-
GadY, a small-RNA regulator of acid response genes in Escherichia coli
-
PMID:15466020
-
Opdyke JA, Kang JG, Storz G. GadY, a small-RNA regulator of acid response genes in Escherichia coli. J Bacteriol 2004; 186:6698-705; PMID:15466020; http://dx.doi.org/10.1128/JB.186.20.6698-6705.2004
-
(2004)
J Bacteriol
, vol.186
, pp. 6698-6705
-
-
Opdyke, J.A.1
Kang, J.G.2
Storz, G.3
-
33
-
-
79151470965
-
RNase III participates in GadY-dependent cleavage of the gadX-gadW mRNA
-
PMID:21147125
-
Opdyke JA, Fozo EM, Hemm MR, Storz G. RNase III participates in GadY-dependent cleavage of the gadX-gadW mRNA. J Mol Biol 2011; 406:29-43; PMID:21147125; http://dx.doi.org/10.1016/j.jmb.2010.12.009
-
(2011)
J Mol Biol
, vol.406
, pp. 29-43
-
-
Opdyke, J.A.1
Fozo, E.M.2
Hemm, M.R.3
Storz, G.4
-
34
-
-
78149421813
-
Bacterial antisense RNAs: How many are there, and what are they doing?
-
PMID:20707673
-
Thomason MK, Storz G. Bacterial antisense RNAs: how many are there, and what are they doing? Annu Rev Genet 2010; 44:167-88; PMID:20707673; http://dx.doi.org/10.1146/annurev-genet-102209-163523
-
(2010)
Annu Rev Genet
, vol.44
, pp. 167-188
-
-
Thomason, M.K.1
Storz, G.2
-
35
-
-
84893483166
-
Widespread suppression of intragenic transcription initiation by H-NS
-
PMID:24449106
-
Singh SS, Singh N, Bonocora RP, Fitzgerald DM, Wade JT, Grainger DC. Widespread suppression of intragenic transcription initiation by H-NS. Genes Dev 2014; 28:214-9; PMID:24449106; http://dx.doi.org/10.1101/gad.234336.113
-
(2014)
Genes Dev
, vol.28
, pp. 214-219
-
-
Singh, S.S.1
Singh, N.2
Bonocora, R.P.3
Fitzgerald, D.M.4
Wade, J.T.5
Grainger, D.C.6
-
36
-
-
70350176597
-
Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA
-
PMID:19732340
-
Papenfort K, Said N, Welsink T, Lucchini S, Hinton JCD, Vogel J. Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA. Mol Microbiol 2009; 74:139-58; PMID:19732340; http://dx.doi.org/10. 1111/j.1365-2958.2009.06857.x
-
(2009)
Mol Microbiol
, vol.74
, pp. 139-158
-
-
Papenfort, K.1
Said, N.2
Welsink, T.3
Lucchini, S.4
Hinton, J.C.D.5
Vogel, J.6
-
37
-
-
34447328708
-
RNase E-dependent processing stabilizes MicX, a Vibrio cholerae sRNA
-
PMID:17590231
-
Davis BM, Waldor MK. RNase E-dependent processing stabilizes MicX, a Vibrio cholerae sRNA. Mol Microbiol 2007; 65:373-85; PMID:17590231; http://dx.doi.org/10.1111/j.1365-2958.2007.05796.x
-
(2007)
Mol Microbiol
, vol.65
, pp. 373-385
-
-
Davis, B.M.1
Waldor, M.K.2
-
38
-
-
0002782867
-
Hfq: A bacterial Sm-like protein that mediates RNA-RNA interaction
-
PMID:11804583
-
Møller T, Franch T, Højrup P, Keene DR, Bächinger HP, Brennan RG, Valentin-Hansen P. Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction. Mol Cell 2002; 9: 23-30; PMID:11804583; http://dx.doi.org/10.1016/S1097-2765(01)00436-1
-
(2002)
Mol Cell
, vol.9
, pp. 23-30
-
-
Møller, T.1
Franch, T.2
Højrup, P.3
Keene, D.R.4
Bächinger, H.P.5
Brennan, R.G.6
Valentin-Hansen, P.7
-
39
-
-
0026579213
-
Regulation of the expression of the cell-cycle gene ftsZ by DicF antisense RNA. Division does not require a fixed number of FtsZ molecules
-
PMID:1372677
-
Tétart F, Bouché JP. Regulation of the expression of the cell-cycle gene ftsZ by DicF antisense RNA. Division does not require a fixed number of FtsZ molecules. Mol Microbiol 1992; 6:615-20; PMID:1372677; http://dx.doi.org/10.1111/j.1365-2958.1992.tb01508.x
-
(1992)
Mol Microbiol
, vol.6
, pp. 615-620
-
-
Tétart, F.1
Bouché, J.P.2
-
40
-
-
0025355785
-
Escherichia coli cell division inhibitor DicF-RNA of the dicB operon. Evidence for its generation in vivo by transcription termination and by RNase III and RNase E-dependent processing
-
PMID:1691299
-
Faubladier M, Cam K, Bouché JP. Escherichia coli cell division inhibitor DicF-RNA of the dicB operon. Evidence for its generation in vivo by transcription termination and by RNase III and RNase E-dependent processing. J Mol Biol 1990; 212:461-71; PMID:1691299; http://dx.doi.org/10.1016/0022-2836(90) 90325-G
-
(1990)
J Mol Biol
, vol.212
, pp. 461-471
-
-
Faubladier, M.1
Cam, K.2
Bouché, J.P.3
-
41
-
-
84877796956
-
Intracellular ribonucleases involved in transcript processing and decay: Precision tools for RNA
-
PMID:23545199
-
Arraiano CM, Mauxion F, Viegas SC, Matos RG, Séraphin B. Intracellular ribonucleases involved in transcript processing and decay: precision tools for RNA. Biochim Biophys Acta 2013; 1829:491-513; PMID:23545199; http://dx.doi.org/10.1016/j.bbagrm.2013.03.009
-
(2013)
Biochim Biophys Acta
, vol.1829
, pp. 491-513
-
-
Arraiano, C.M.1
Mauxion, F.2
Viegas, S.C.3
Matos, R.G.4
Séraphin, B.5
-
42
-
-
40449137036
-
The RNA binding protein Hfq interacts specifically with tRNAs
-
PMID:18230766
-
Lee T, Feig AL. The RNA binding protein Hfq interacts specifically with tRNAs. RNA 2008; 14:514-23; PMID:18230766; http://dx.doi.org/10.1261/rna.531408
-
(2008)
RNA
, vol.14
, pp. 514-523
-
-
Lee, T.1
Feig, A.L.2
-
43
-
-
84870503889
-
Requirement of upstream Hfq-binding (ARN) x elements in glmS and the Hfq C-terminal region for GlmS upregulation by sRNAs GlmZ and GlmY
-
PMID:22661574
-
Salim NN, Faner MA, Philip JA, Feig AL. Requirement of upstream Hfq-binding (ARN) x elements in glmS and the Hfq C-terminal region for GlmS upregulation by sRNAs GlmZ and GlmY. Nucleic Acids Res 2012; 40:8021-32; PMID:22661574; http://dx.doi.org/10.1093/nar/gks392
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 8021-8032
-
-
Salim, N.N.1
Faner, M.A.2
Philip, J.A.3
Feig, A.L.4
-
44
-
-
84872543206
-
A decade of riboswitches
-
PMID:23332744
-
Serganov A, Nudler E. A decade of riboswitches. Cell 2013; 152:17-24; PMID:23332744; http://dx.doi.org/10.1016/j.cell.2012.12.024
-
(2013)
Cell
, vol.152
, pp. 17-24
-
-
Serganov, A.1
Nudler, E.2
-
45
-
-
70350771280
-
A trans-acting riboswitch controls expression of the virulence regulator PrfA in Listeria monocytogenes
-
PMID:19914169
-
Loh E, Dussurget O, Gripenland J, Vaitkevicius K, Tiensuu T, Mandin P, Repoila F, Buchrieser C, Cossart P, Johansson J. A trans-acting riboswitch controls expression of the virulence regulator PrfA in Listeria monocytogenes. Cell 2009; 139:770-9; PMID:19914169; http://dx.doi.org/10.1016/j.cell.2009.08. 046
-
(2009)
Cell
, vol.139
, pp. 770-779
-
-
Loh, E.1
Dussurget, O.2
Gripenland, J.3
Vaitkevicius, K.4
Tiensuu, T.5
Mandin, P.6
Repoila, F.7
Buchrieser, C.8
Cossart, P.9
Johansson, J.10
-
46
-
-
84885997727
-
NextGenMap: Fast and accurate read mapping in highly polymorphic genomes
-
PMID:23975764
-
Sedlazeck FJ, Rescheneder P, von Haeseler A. NextGenMap: fast and accurate read mapping in highly polymorphic genomes. Bioinformatics 2013; 29:2790-1; PMID:23975764; http://dx.doi.org/10.1093/bioinformatics/btt468
-
(2013)
Bioinformatics
, vol.29
, pp. 2790-2791
-
-
Sedlazeck, F.J.1
Rescheneder, P.2
Von Haeseler, A.3
-
47
-
-
77955895425
-
BigWig and BigBed: Enabling browsing of large distributed datasets
-
PMID:20639541
-
Kent WJ, Zweig AS, Barber G, Hinrichs AS, Karolchik D. BigWig and BigBed: enabling browsing of large distributed datasets. Bioinformatics 2010; 26:2204-7; PMID:20639541; http://dx.doi.org/10.1093/bioinformatics/btq351
-
(2010)
Bioinformatics
, vol.26
, pp. 2204-2207
-
-
Kent, W.J.1
Zweig, A.S.2
Barber, G.3
Hinrichs, A.S.4
Karolchik, D.5
-
48
-
-
75249087100
-
edgeR: A Bioconductor package for differential expression analysis of digital gene expression data
-
PMID:19910308
-
Robinson MD, McCarthy DJ, Smyth GK. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 2010; 26:139-40; PMID:19910308; http://dx.doi.org/10.1093/bioinformatics/btp616
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
|