Hfq stimulates the activity of the CCA-adding enzyme

BMC Molecular Biology

Volumn 8, Issue , 2007, Pages

  Scheibe, Marion ^a   Bonin, Sonja ^a   Hajnsdorf, Eliane ^b   Betat, Heike ^a   Mörl, Mario ^a  

^a UNIVERSITY OF LEIPZIG   (Germany)

^b CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

HOST FACTOR 1; MESSENGER RNA; POLYNUCLEOTIDE ADENYLYLTRANSFERASE; RNA POLYMERASE; TRANSFER RNA; ESCHERICHIA COLI PROTEIN; HFQ PROTEIN, E COLI; PCNB PROTEIN, E COLI; TRANSFER RIBONUCLEIC ACID NUCLEOTIDYLTRANSFERASE; UNCLASSIFIED DRUG;

ARTICLE; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME BINDING; ENZYME MECHANISM; ESCHERICHIA COLI; NONHUMAN; POLYADENYLATION; PROTEIN EXPRESSION; PROTEIN PROTEIN INTERACTION; RNA METABOLISM; ENZYME ACTIVATION; ENZYME SPECIFICITY; KINETICS; METABOLISM; NUCLEOTIDE SEQUENCE; PHYSIOLOGY; PROTEIN BINDING;

BACTERIA (MICROORGANISMS);

BASE SEQUENCE; ENZYME ACTIVATION; ESCHERICHIA COLI PROTEINS; HOST FACTOR 1 PROTEIN; KINETICS; POLYNUCLEOTIDE ADENYLYLTRANSFERASE; PROTEIN BINDING; RNA NUCLEOTIDYLTRANSFERASES; RNA, TRANSFER; SUBSTRATE SPECIFICITY;

EID: 37849000163     PISSN: None     EISSN: 14712199     Source Type: Journal    
DOI: 10.1186/1471-2199-8-92     Document Type: Article

References (44)

1. Franze de Fernandez MT Hayward WS August JT Bacterial proteins required for replication of phage Q ribonucleic acid. Pruification and properties of host factor I, a ribonucleic acid-binding protein J Biol Chem 1972, 247(3):824-831. 4550762
2. Arluison V Mura C Guzman MR Liquier J Pellegrini O Gingery M Regnier P Marco S Three-dimensional structures of fibrillar Sm proteins: Hfq and other Sm-like proteins J Mol Biol 2006, 356(1):86-96. 10.1016/ j.jmb.2005.11.010 16337963
3. Sauter C Basquin J Suck D Sm-like proteins in Eubacteria: The crystal structure of the Hfq protein from Escherichia coli Nucleic Acids Res 2003, 31(14):4091-4098. 167641 12853626 10.1093/nar/gkg480
4. Vassilieva M Garber MB The regulatory role of the Hfq protein in bacterial cells Mol Biol (Mosk) 2002, 36(6):970-977. 12500533
5. Valentin-Hansen P Eriksen M Udesen C The bacterial Sm-like protein Hfq: a key player in RNA transactions Mol Microbiol 2004, 51(6):1525-1533. 10.1111/j.1365-2958.2003.03935.x 15009882
6. Geissmann TA Touati D Hfq, a new chaperoning role: Binding to messenger RNA determines access for small RNA regulator EMBO J 2004, 23(2):396-405. 1271764 14739933 10.1038/sj.emboj.7600058
7. Moller T Franch T Hojrup P Keene DR Bachinger HP Brennan RG Valentin-Hansen P Hfq: A bacterial Sm-like protein that mediates RNA-RNA interaction Mol Cell 2002, 9(1):23-30. 10.1016/S1097-2765(01)00436-1 11804583
8. Zhang A Wassarman KM Rosenow C Tjaden BC Storz G Gottesman S Global analysis of small RNA and mRNA targets of Hfq Mol Microbiol 2003, 50(4):1111-1124. 10.1046/j.1365-2958.2003.03734.x 14622403
9. Rasmussen AA Eriksen M Gilany K Udesen C Franch T Petersen C Valentin-Hansen P Regulation of ompA mRNA stability: The role of a small regulatory RNA in growth phase-dependent control Mol Microbiol 2005, 58(5):1421-1429. 16313626
10. Udekwu KI Darfeuille F Vogel J Reimegard J Holmqvist E Wagner EG Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA Genes Dev 2005, 19(19):2355-2366. 1240044 16204185 10.1101/gad.354405
11. Folichon M Arluison V Pellegrini O Huntzinger E Regnier P Hajnsdorf E The poly(A) binding protein Hfq protects RNA from RNase E and exoribonucleolytic degradation Nucleic Acids Res 2003, 31(24):7302-7310. 291859 14654705 10.1093/nar/gkg915
12. Azam TA Hiraga S Ishihama A Two types of localization of the DNA-binding proteins within the Escherichia coli nucleoid Genes Cells 2000, 5(8):613-626. 10.1046/j.1365-2443.2000.00350.x 10947847
13. Azam TA Ishihama A Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity J Biol Chem 1999, 274(46):33105-331013. 10.1074/ jbc.274.46.33105 10551881
14. Hajnsdorf E Regnier P Host factor Hfq of Escherichia coli stimulates elongation of poly(A) tails by poly(A) polymerase I Proc Natl Acad Sci USA 2000, 97(4):1501-1505, 26463 10677490 10.1073/pnas.040549897
15. Mohanty BK Maples VF Kushner SR The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli Mol Microbiol 2004, 54(4):905-920. 10.1111/j.1365-2958.2004.04337.x 15522076
16. Yue D Maizels N Weiner AM CCA-adding enzymes and poly(A) polymerases are all members of the same nucleotidyltransferase superfamily: characterization of the CCA-adding enzyme from the archaeal hyperthermophile Sulfolobus shibatae RNA 1996, 2(9):895-908. 1369424 8809016
17. Schürer H Schiffer S Marchfelder A Mörl M This is the end: processing, editing and repair at the tRNA 3′-terminus Biol Chem 2001, 382(8):1147-1156. 10.1515/BC.2001.144 11592395
18. Betat H Rammelt C Martin G Mörl M Exchange of Regions between Bacterial Poly(A) polymerase and CCA Adding Enzyme Generates Altered Specificities Mol Cell 2004, 15:389-398. 10.1016/j.molcel.2004.06.026 15304219
19. Reuven NB Zhou Z Deutscher MP Functional overlap of tRNA nucleotidyltransferase, poly(A) polymerase I, and polynucleotide phosphorylase J Biol Chem 1997, 272:52. 33255 33259 10.1074/ jbc.272.52.33255 9407115
20. Hall KB Sampson JR Uhlenbeck OC Redfield AG Structure of an unmodified tRNA molecule Biochemistry 1989, 28(14): 5794-5801. 10.1021/bi00440a014 2775736
21. Robertus JD Ladner JE Finch JT Rhodes D Brown RS Clark BF Klug A Structure of yeast phenylalanine tRNA at 3 A resolution Nature 1974, 250(467):546-551. 10.1038/250546a0 4602655
22. Sampson JR Uhlenbeck OC Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitro Proc Natl Acad Sci USA 1988, 85(4):1033-1037. 279695 3277187 10.1073/ pnas.85.4.1033
23. Shi H Moore PB The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: A classic structure revisited RNA 2000, 6(8):1091-1105. 1369984 10943889 10.1017/S1355838200000364
24. Thomas BC Chamberlain J Engelke DR Gegenheimer P Evidence for an RNA-based catalytic mechanism in eukaryotic nuclear ribonuclease P RNA 2000, 6(4):554-562. 1369936 10786846 10.1017/S1355838200991477
25. Khvorova A Motorin Y Wolfson AD Pyrophosphate mediates the effect of certain tRNA mutations on aminoacylation of yeast tRNA(Phe) Nucleic Acids Res 1999, 27(22):4451-4456. 148729 10536155 10.1093/nar/27.22.4451
26. Dale T Sanderson LE Uhlenbeck OC The affinity of elongation factor Tu for an aminoacyl-tRNA is modulated by the esterified amino acid Biochemistry 2004, 43(20):6159-6166. 10.1021/bi036290o 15147200
27. Greenblatt J McLimont M Hanly S Termination of transcription by nusA gene protein of Escherichia coli Nature 1981, 292(5820):215-220. 10.1038/ 292215a0 6265785
28. Reuter K Ficner R Sequence analysis and overexpression of the Zymomonas mobilis tgt gene encoding tRNA-guanine transglycosylase: Purification and biochemical characterization of the enzyme J Bacteriol 1995, 177(18):5284-5288. 177320 7665516
29. Buck AH Kazantsev AV Dalby AB Pace NR Structural perspective on the activation of RNAse P RNA by protein Nature structural & molecular biology 2005, 12(11):958-964. 16228004
30. Balandina A Claret L Hengge-Aronis R Rouviere-Yaniv J The Escherichia coli histone-like protein HU regulates rpoS translation Molecular microbiology 2001, 39(4):1069-1079. 10.1046/j.1365-2958.2001.02305.x 11251825
31. Balandina A Kamashev D Rouviere-Yaniv J The bacterial histone-like protein HU specifically recognizes similar structures in all nucleic acids. DNA, RNA, and their hybrids J Biol Chem 2002, 277(31):27622-27628. 10.1074/jbc.M201978200 12006568
32. Mikulecky PJ Kaw MK Brescia CC Takach JC Sledjeski DD Feig AL Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs Nature structural & molecular biology 2004, 11(12):1206-1214. 10.1038/nsmb858 15531892
33. Ziolkowska K Derreumaux P Folichon M Pellegrini O Regnier P Boni IV Hajnsdorf E Hfq variant with altered RNA binding functions Nucleic acids research 2006, 34(2):709-720. 1356530 16449205 10.1093/nar/gkj464
34. Sonnleitner E Napetschnig J Afonyushkin T Ecker K Vecerek B Moll I Kaberdin VR Blasi U Functional effects of variants of the RNA chaperone Hfq Biochem Biophys Res Commun 2004, 323(3):1017-1023. 10.1016/ j.bbrc.2004.08.190 15381101
35. Vecerek B Moll I Blasi U Translational autocontrol of the Escherichia coli hfq RNA chaperone gene RNA 2005, 11(6):976-984. 1370782 15872186 10.1261/rna.2360205
36. Tsui HC Leung HC Winkler ME Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12 Mol Microbiol 1994 13 1 35 49 10.1111/j.1365-2958.1994.tb00400.x 7984093
37. Muffler A Traulsen DD Fischer D Lange R Hengge-Aronis R The RNA-binding protein HF-I plays a global regulatory role which is largely, but not exclusively, due to its role in expression of the sigmaS subunit of RNA polymerase in Escherichia coli J Bacteriol 1997. 179(1):297-300. 178696 8982015
38. Zhang A Wassarman KM Ortega J Steven AC Storz G The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs Mol Cell 2002, 9(1):11-22. 10.1016/S1097-2765(01)00437-3 11804582
39. Folichon M Allemand F Regnier P Hajnsdorf E Stimulation of poly(A) synthesis by Escherichia coli poly(A)polymerase I is correlated with Hfq binding to poly(A) tails The FEBS journal 2005, 272(2):454-463. 10.1111/ j.1742-4658.2004.04485.x 15654883
40. Le Derout J Folichon M Briani F Deho G Regnier P Hajnsdorf E Hfq affects the length and the frequency of short oligo(A) tails at the 3′ end of Escherichia coli rpsO mRNAs Nucleic Acids Res 2003, 31(14):4017-4023. 165971 12853618 10.1093/nar/gkg456
41. Lease RA Woodson SA Cycling of the Sm-like protein Hfq on the DsrA small regulatory RNA J Mol Biol 2004, 344(5):1211-1223. 10.1016/ j.jmb.2004.10.006 15561140
42. Zhu L Deutscher MP tRNA nucleotidyltransferase is not essential for Escherichia coli viability EMBO J 1987, 6(8):2473-2477. 553656 3311729
43. Kufel J Allmang C Verdone L Beggs JD Tollervey D Lsm proteins are required for normal processing of pre-tRNAs and their efficient association with La-homologous protein Lhp1p Mol Cell Biol 2002, 22(14):5248-5256. 139769 12077351 10.1128/MCB.22.14.5248-5256.2002
44. Mörl M Lizano E Willkomm DK Hartmann RK Production of RNAs with Homogeneous 5′ and 3′ Ends Handbook of RNA Biochemistry Weinheim, Wiley-VCH Hartmann RK, Bindereif A, Schön A, Westhof E 2005, 1:22-35.