-
1
-
-
59349083966
-
Protein aggregation kinetics, mechanism, and curve-fitting: a review of the literature
-
Morris AM, Watzky MA, Finke RG. Protein aggregation kinetics, mechanism, and curve-fitting: a review of the literature. Biochim Biophys Acta 2009;1794:375-397.
-
(2009)
Biochim Biophys Acta
, vol.1794
, pp. 375-397
-
-
Morris, A.M.1
Watzky, M.A.2
Finke, R.G.3
-
2
-
-
84883140558
-
Modelling amyloid fibril formation kinetics: mechanisms of nucleation and growth
-
Gillam JE, MacPhee CE. Modelling amyloid fibril formation kinetics: mechanisms of nucleation and growth. J Phys: Condens Matter 2013;25:272101.
-
(2013)
J Phys: Condens Matter
, vol.25
, pp. 272101
-
-
Gillam, J.E.1
MacPhee, C.E.2
-
3
-
-
33947613349
-
A theory of linear and helical aggregations of macromolecules
-
Oosawa F, Kasai M. A theory of linear and helical aggregations of macromolecules. J Mol Biol 1962;4:10-21.
-
(1962)
J Mol Biol
, vol.4
, pp. 10-21
-
-
Oosawa, F.1
Kasai, M.2
-
4
-
-
0021527508
-
Kinetics of nucleation-controlled polymerization
-
Bishop MF, Ferrone FA. Kinetics of nucleation-controlled polymerization. Biophys J 1984;46:631-644.
-
(1984)
Biophys J
, vol.46
, pp. 631-644
-
-
Bishop, M.F.1
Ferrone, F.A.2
-
5
-
-
0021837479
-
Kinetics of sickle hemoglobin polymerization. II. A double nucleation mechanism
-
Ferrone FA, Hofrichter J, Eaton WA. Kinetics of sickle hemoglobin polymerization. II. A double nucleation mechanism. J Mol Biol 1985;183:611-631.
-
(1985)
J Mol Biol
, vol.183
, pp. 611-631
-
-
Ferrone, F.A.1
Hofrichter, J.2
Eaton, W.A.3
-
7
-
-
0032968132
-
Quantifying the kinetic parameters of prion replication
-
Masel J, Jansen VAA, Nowak MA. Quantifying the kinetic parameters of prion replication. Biophys Chem 1999;77:139-152.
-
(1999)
Biophys Chem
, vol.77
, pp. 139-152
-
-
Masel, J.1
Jansen, V.A.A.2
Nowak, M.A.3
-
8
-
-
8844247180
-
Mechanism of prion propagation: amyloid growth occurs by monomer addition
-
Collins SR, Douglass A, Vale RD, Weissman JS. Mechanism of prion propagation: amyloid growth occurs by monomer addition. PLoS Biol 2004;2:1582-1590.
-
(2004)
PLoS Biol
, vol.2
, pp. 1582-1590
-
-
Collins, S.R.1
Douglass, A.2
Vale, R.D.3
Weissman, J.S.4
-
9
-
-
0842332840
-
Silent prions lying in wait: a two-hit model of prion/amyloid formation and infection
-
Hall D, Edskes H. Silent prions lying in wait: a two-hit model of prion/amyloid formation and infection. J Mol Biol 2004;336:775-786.
-
(2004)
J Mol Biol
, vol.336
, pp. 775-786
-
-
Hall, D.1
Edskes, H.2
-
10
-
-
28844469962
-
One-dimensional model of yeast prion aggregation
-
Kunes KC, Cox DL, Singh RRP. One-dimensional model of yeast prion aggregation. Phys Rev E 2005;72:051915.
-
(2005)
Phys Rev E
, vol.72
, pp. 051915
-
-
Kunes, K.C.1
Cox, D.L.2
Singh, R.R.P.3
-
11
-
-
34250834054
-
A Lumry-Eyring nucleated polymerization model of protein aggregation kinetics: 1. Aggregation with pre-equilibrated unfolding
-
Andrews JM, Roberts CJ. A Lumry-Eyring nucleated polymerization model of protein aggregation kinetics: 1. Aggregation with pre-equilibrated unfolding. J Phys Chem B 2007;111:7897-7913.
-
(2007)
J Phys Chem B
, vol.111
, pp. 7897-7913
-
-
Andrews, J.M.1
Roberts, C.J.2
-
12
-
-
34547638452
-
Fiber-dependent amyloid formation as catalysis of an existing reaction pathway
-
Ruschak AM, Miranker AD. Fiber-dependent amyloid formation as catalysis of an existing reaction pathway. Proc Natl Acad Sci USA 2007;104:12341-12346.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 12341-12346
-
-
Ruschak, A.M.1
Miranker, A.D.2
-
13
-
-
34247862247
-
A three-stage kinetic model of amyloid fibrillation
-
Lee C-C, Nayak A, Sethuraman A, Belfort G, McRae GJ. A three-stage kinetic model of amyloid fibrillation. Biophys J 2007;92:3448-3458.
-
(2007)
Biophys J
, vol.92
, pp. 3448-3458
-
-
Lee, C.-C.1
Nayak, A.2
Sethuraman, A.3
Belfort, G.4
McRae, G.J.5
-
14
-
-
48249092311
-
Systematic analysis of nucleation-dependent polymerization reveals new insights into the mechanism of amyloid self-assembly
-
Xue W-F, Homans SW, Radford SE. Systematic analysis of nucleation-dependent polymerization reveals new insights into the mechanism of amyloid self-assembly. Proc Natl Acad Sci USA 2008;105:8926-8931.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 8926-8931
-
-
Xue, W.-F.1
Homans, S.W.2
Radford, S.E.3
-
15
-
-
59449098817
-
The mechanism of amyloid-fibril formation by stefin B: temperature and protein concentration dependence of the rates
-
Skerget K, Vilfan A, Pompe-Novak M, Turk V, Waltho JP, Turk D, Zerovnik E. The mechanism of amyloid-fibril formation by stefin B: temperature and protein concentration dependence of the rates. Proteins 2009;74:425-436.
-
(2009)
Proteins
, vol.74
, pp. 425-436
-
-
Skerget, K.1
Vilfan, A.2
Pompe-Novak, M.3
Turk, V.4
Waltho, J.P.5
Turk, D.6
Zerovnik, E.7
-
16
-
-
72149118250
-
An analytical solution to the kinetics of breakable filament assembly
-
Knowles TPJ, Waudby CA, Devlin GL, Cohen SIA, Aguzzi A, Vendruscolo M, Terentjev EM, Welland ME, Dobson CM. An analytical solution to the kinetics of breakable filament assembly. Science 2009;326:1533-1537.
-
(2009)
Science
, vol.326
, pp. 1533-1537
-
-
Knowles, T.P.J.1
Waudby, C.A.2
Devlin, G.L.3
Cohen, S.I.A.4
Aguzzi, A.5
Vendruscolo, M.6
Terentjev, E.M.7
Welland, M.E.8
Dobson, C.M.9
-
17
-
-
80051866825
-
Nucleated polymerization with secondary pathways. I. Time evolution of principal moments
-
Cohen SIA, Vendruscolo M, Welland ME, Dobson CM, Terentjev EM, Knowles TPJ. Nucleated polymerization with secondary pathways. I. Time evolution of principal moments. J Chem Phys 2011;135:065105.
-
(2011)
J Chem Phys
, vol.135
, pp. 065105
-
-
Cohen, S.I.A.1
Vendruscolo, M.2
Welland, M.E.3
Dobson, C.M.4
Terentjev, E.M.5
Knowles, T.P.J.6
-
18
-
-
80051899060
-
Nucleated polymerization with secondary pathways. II. Determination of self-consistent solutions to growth processes described by non-linear master equations
-
Cohen SIA, Vendruscolo M, Dobson CM, Knowles TPJ. Nucleated polymerization with secondary pathways. II. Determination of self-consistent solutions to growth processes described by non-linear master equations. J Chem Phys 2011;135:065106.
-
(2011)
J Chem Phys
, vol.135
, pp. 065106
-
-
Cohen, S.I.A.1
Vendruscolo, M.2
Dobson, C.M.3
Knowles, T.P.J.4
-
19
-
-
80051897336
-
Nucleated polymerization with secondary pathways. III. Equilibrium behavior and oligomer populations
-
Cohen SIA, Vendruscolo M, Dobson CM, Knowles TPJ. Nucleated polymerization with secondary pathways. III. Equilibrium behavior and oligomer populations. J Chem Phys 2011;135:065107.
-
(2011)
J Chem Phys
, vol.135
, pp. 065107
-
-
Cohen, S.I.A.1
Vendruscolo, M.2
Dobson, C.M.3
Knowles, T.P.J.4
-
20
-
-
80052304480
-
Assessing the contribution of heterogeneous distributions of oligomers to aggregation mechanisms of polyglutamine peptides
-
Vitalis A, Pappu RV. Assessing the contribution of heterogeneous distributions of oligomers to aggregation mechanisms of polyglutamine peptides. Biophys Chem 2011;159:14-23.
-
(2011)
Biophys Chem
, vol.159
, pp. 14-23
-
-
Vitalis, A.1
Pappu, R.V.2
-
21
-
-
84869007961
-
An efficient kinetic model for assemblies of amyloid fibrils and its application to polyglutamine aggregation
-
Prigent S, Ballesta A, Charles F, Lenuzza N, Gabriel P, Tine LM, Rezaei H, Doumic M. An efficient kinetic model for assemblies of amyloid fibrils and its application to polyglutamine aggregation. PLoS One 2012;7:e43273.
-
(2012)
PLoS One
, vol.7
-
-
Prigent, S.1
Ballesta, A.2
Charles, F.3
Lenuzza, N.4
Gabriel, P.5
Tine, L.M.6
Rezaei, H.7
Doumic, M.8
-
22
-
-
84873336558
-
Simple moment-closure model for the self-assembly of breakable amyloid filaments
-
Hong L, Yong W-A. Simple moment-closure model for the self-assembly of breakable amyloid filaments. Biophys J 2013;104:533-540.
-
(2013)
Biophys J
, vol.104
, pp. 533-540
-
-
Hong, L.1
Yong, W.-A.2
-
23
-
-
84878376696
-
A kinetic study of amyloid formation: fibril growth and length distributions
-
Schreck JS, Yuan J-M. A kinetic study of amyloid formation: fibril growth and length distributions. J Phys Chem B 2013;117:6574-6583.
-
(2013)
J Phys Chem B
, vol.117
, pp. 6574-6583
-
-
Schreck, J.S.1
Yuan, J.-M.2
-
24
-
-
84890745009
-
An imaging and systems modeling approach to fibril breakage enables prediction of amyloid behavior
-
Xue W-F, Radford SE. An imaging and systems modeling approach to fibril breakage enables prediction of amyloid behavior. Biophys J 2013;105:2811-2819.
-
(2013)
Biophys J
, vol.105
, pp. 2811-2819
-
-
Xue, W.-F.1
Radford, S.E.2
-
25
-
-
84893833627
-
How to determine the size of folding nuclei of protofibrils from the concentration dependence of the rate and lag-time of aggregation. I. Modeling the amyloid protofibril formation
-
Dovidchenko NV, Finkelstein AV, Galzitskaya OV. How to determine the size of folding nuclei of protofibrils from the concentration dependence of the rate and lag-time of aggregation. I. Modeling the amyloid protofibril formation. J Phys Chem B 2014;118:1189-1197.
-
(2014)
J Phys Chem B
, vol.118
, pp. 1189-1197
-
-
Dovidchenko, N.V.1
Finkelstein, A.V.2
Galzitskaya, O.V.3
-
26
-
-
84884828846
-
Protein fibrillation due to elongation and fragmentation of initially appeared fibrils: a simple kinetic model
-
Kashchiev D. Protein fibrillation due to elongation and fragmentation of initially appeared fibrils: a simple kinetic model. J Chem Phys 2013;139:105103.
-
(2013)
J Chem Phys
, vol.139
, pp. 105103
-
-
Kashchiev, D.1
-
28
-
-
0020857088
-
Length dependence of rate constants for end-to-end association and dissociation of equilibrium linear aggregates
-
Hill TL. Length dependence of rate constants for end-to-end association and dissociation of equilibrium linear aggregates. Biophys J 1983;44:285-288.
-
(1983)
Biophys J
, vol.44
, pp. 285-288
-
-
Hill, T.L.1
-
29
-
-
68149099439
-
Self-organization pathways and spatial heterogeneity in insulin amyloid fibril formation
-
Fodera V, Cataldo S, Librizzi F, Pignataro B, Spiccia P, Leone M. Self-organization pathways and spatial heterogeneity in insulin amyloid fibril formation. J Phys Chem B 2009;113:10830-10837.
-
(2009)
J Phys Chem B
, vol.113
, pp. 10830-10837
-
-
Fodera, V.1
Cataldo, S.2
Librizzi, F.3
Pignataro, B.4
Spiccia, P.5
Leone, M.6
-
30
-
-
62649173217
-
Branching in amyloid fibril growth
-
Andersen CB, Yagi H, Manno M, Martorana V, Ban T, Christiansen G, Otzen DE, Goto Y, Rischel C. Branching in amyloid fibril growth. Biophys J 2009;96:1529-1536.
-
(2009)
Biophys J
, vol.96
, pp. 1529-1536
-
-
Andersen, C.B.1
Yagi, H.2
Manno, M.3
Martorana, V.4
Ban, T.5
Christiansen, G.6
Otzen, D.E.7
Goto, Y.8
Rischel, C.9
-
31
-
-
79953730595
-
Self-folding and aggregation of amyloid nanofibrils
-
Paparcone R, Cranford SW, Buehler MJ. Self-folding and aggregation of amyloid nanofibrils. Nanoscale 2011;3:1748-1755.
-
(2011)
Nanoscale
, vol.3
, pp. 1748-1755
-
-
Paparcone, R.1
Cranford, S.W.2
Buehler, M.J.3
-
33
-
-
33846005437
-
Absolute correlation between lag time and growth rate in the spontaneous formation of several amyloid-like aggregates and fibrils
-
Fändrich M. Absolute correlation between lag time and growth rate in the spontaneous formation of several amyloid-like aggregates and fibrils. J Mol Biol 2007;365:1266-1270.
-
(2007)
J Mol Biol
, vol.365
, pp. 1266-1270
-
-
Fändrich, M.1
-
34
-
-
77955792312
-
Insight into the correlation between lag time and aggregation rate in the kinetics of protein aggregation
-
Auer S, Kashchiev D. Insight into the correlation between lag time and aggregation rate in the kinetics of protein aggregation. Proteins 2010;78:2412-2416.
-
(2010)
Proteins
, vol.78
, pp. 2412-2416
-
-
Auer, S.1
Kashchiev, D.2
|