메뉴 건너뛰기




Volumn 22, Issue 9, 2014, Pages 1111-1116

The 'extremely ancient' chromosome that isn't: A forensic bioinformatic investigation of Albert Perry's X-degenerate portion of the y chromosome

Author keywords

A00 haplotype; Albert Perry; interbreeding; TMRCA; Y chromosome; Y chromosomal Adam

Indexed keywords

MITOCHONDRIAL DNA;

EID: 84906276648     PISSN: 10184813     EISSN: 14765438     Source Type: Journal    
DOI: 10.1038/ejhg.2013.303     Document Type: Article
Times cited : (23)

References (53)
  • 1
    • 84906271112 scopus 로고    scopus 로고
    • FamilyTreeDNA: Y-Haplogroup A Project-Y-DNA Classic Chart
    • FamilyTreeDNA: Y-Haplogroup A Project-Y-DNA Classic Chart. http://www.familytreedna. com/public/Haplogroup-A/default.aspx?section= yresultsVol 2013
    • (2013)
  • 2
    • 84876407035 scopus 로고    scopus 로고
    • An african american paternal lineage adds an extremely ancient root to the human y chromosome phylogenetic tree
    • Mendez FL, Krahn T, Schrack B et al: An african american paternal lineage adds an extremely ancient root to the human y chromosome phylogenetic tree. Am J Hum Genet 2013; 92: 454-459.
    • (2013) Am J Hum Genet , vol.92 , pp. 454-459
    • Mendez, F.L.1    Krahn, T.2    Schrack, B.3
  • 3
    • 79958787832 scopus 로고    scopus 로고
    • A revised root for the human y chromosomal phylogenetic tree: The origin of patrilineal diversity in Africa
    • Cruciani F, Trombetta B, Massaia A, Destro-Bisol G, Sellitto D, Scozzari R: A revised root for the human Y chromosomal phylogenetic tree: the origin of patrilineal diversity in Africa. Am J Hum Genet 2011; 88: 814-818.
    • (2011) Am J Hum Genet , vol.88 , pp. 814-818
    • Cruciani, F.1    Trombetta, B.2    Massaia, A.3    Destro-Bisol, G.4    Sellitto, D.5    Scozzari, R.6
  • 5
    • 6344225549 scopus 로고    scopus 로고
    • Genetic evidence for unequal effective population sizes of human females and males
    • Wilder JA, Mobasher Z, Hammer MF: Genetic evidence for unequal effective population sizes of human females and males. Mol Biol Evol 2004; 21: 2047-2057.
    • (2004) Mol Biol Evol , vol.21 , pp. 2047-2057
    • Wilder, J.A.1    Mobasher, Z.2    Hammer, M.F.3
  • 6
    • 0036262985 scopus 로고    scopus 로고
    • Frequentist estimation of coalescence times from nucleotide sequence data using a tree-based partition
    • Tang H, Siegmund DO, Shen P, Oefner PJ, Feldman MW: Frequentist estimation of coalescence times from nucleotide sequence data using a tree-based partition. Genetics 2002; 161: 447-459.
    • (2002) Genetics , vol.161 , pp. 447-459
    • Tang, H.1    Siegmund, D.O.2    Shen, P.3    Oefner, P.J.4    Feldman, M.W.5
  • 7
    • 84881043944 scopus 로고    scopus 로고
    • Sequencing y chromosomes resolves discrepancy in time to common ancestor of males versus females
    • Poznik GD, Henn BM, Yee MC et al: Sequencing Y chromosomes resolves discrepancy in time to common ancestor of males versus females. Science 2013; 341: 562-565.
    • (2013) Science , vol.341 , pp. 562-565
    • Poznik, G.D.1    Henn, B.M.2    Yee, M.C.3
  • 8
    • 84906215966 scopus 로고    scopus 로고
    • Re-examining the 'out of africa' theory and the origin of Europeoids (Caucasoids) in light of DNA genealogy
    • Klyosov AA, Rozhanskii IL: Re-examining the 'out of africa' theory and the origin of Europeoids (Caucasoids) in light of DNA genealogy. Adv Anthropol 2012; 2: 80-86.
    • (2012) Adv Anthropol , vol.2 , pp. 80-86
    • Klyosov, A.A.1    Rozhanskii, I.L.2
  • 9
    • 13944279562 scopus 로고    scopus 로고
    • Stratigraphic placement and age of modern humans from Kibish, Ethiopia
    • McDougall I, Brown FH, Fleagle JG: Stratigraphic placement and age of modern humans from Kibish, Ethiopia. Nature 2005; 433: 733-736.
    • (2005) Nature , vol.433 , pp. 733-736
    • McDougall, I.1    Brown, F.H.2    Fleagle, J.G.3
  • 10
    • 84878839651 scopus 로고    scopus 로고
    • Human hybrids
    • Hammer MF: Human hybrids. Sci Am 2013; 308: 66-71.
    • (2013) Sci Am , vol.308 , pp. 66-71
    • Hammer, M.F.1
  • 11
    • 84866943935 scopus 로고    scopus 로고
    • Ancient structure in Africa unlikely to explain Neanderthal and non-African genetic similarity
    • Yang MA, Malaspinas AS, Durand EY, Slatkin M: Ancient structure in Africa unlikely to explain Neanderthal and non-African genetic similarity. Mol Biol Evol 2012; 29: 2987-2995.
    • (2012) Mol Biol Evol , vol.29 , pp. 2987-2995
    • Yang, M.A.1    Malaspinas, A.S.2    Durand, E.Y.3    Slatkin, M.4
  • 12
    • 77952136530 scopus 로고    scopus 로고
    • A draft sequence of the Neanderthal genome
    • Green RE, Krause J, Briggs AW et al: A draft sequence of the Neanderthal genome. Science 2010; 328: 710-722.
    • (2010) Science , vol.328 , pp. 710-722
    • Green, R.E.1    Krause, J.2    Briggs, A.W.3
  • 13
    • 69949140292 scopus 로고    scopus 로고
    • Human y chromosome base-substitution mutation rate measured by direct sequencing in a deep-rooting pedigree
    • Xue Y, Wang Q, Long Q et al: Human Y chromosome base-substitution mutation rate measured by direct sequencing in a deep-rooting pedigree. Curr Biol 2009; 19: 1453-1457.
    • (2009) Curr Biol , vol.19 , pp. 1453-1457
    • Xue, Y.1    Wang, Q.2    Long, Q.3
  • 14
    • 84881048484 scopus 로고    scopus 로고
    • Low-pass DNA sequencing of 1200 Sardinians reconstructs European Y-chromosome phylogeny
    • Francalacci P, Morelli L, Angius A et al: Low-pass DNA sequencing of 1200 Sardinians reconstructs European Y-chromosome phylogeny. Science 2013; 341: 565-569.
    • (2013) Science , vol.341 , pp. 565-569
    • Francalacci, P.1    Morelli, L.2    Angius, A.3
  • 15
    • 84865208871 scopus 로고    scopus 로고
    • Rate of de novo mutations and the importance of father's age to disease risk
    • Kong A, Frigge ML, Masson G et al: Rate of de novo mutations and the importance of father's age to disease risk. Nature 2012; 488: 471-475.
    • (2012) Nature , vol.488 , pp. 471-475
    • Kong, A.1    Frigge, M.L.2    Masson, G.3
  • 16
    • 84984761809 scopus 로고    scopus 로고
    • Comparative analysis of chimpanzee and human y chromosomes unveils complex evolutionary pathway
    • Kuroki Y, Toyoda A, Noguchi H et al: Comparative analysis of chimpanzee and human Y chromosomes unveils complex evolutionary pathway. Nat Genet 2006; 38: 158-167.
    • (2006) Nat Genet , vol.38 , pp. 158-167
    • Kuroki, Y.1    Toyoda, A.2    Noguchi, H.3
  • 17
    • 0037967242 scopus 로고    scopus 로고
    • The male-specific region of the human y chromosome is a mosaic of discrete sequence classes
    • Skaletsky H, Kuroda-Kawaguchi T, Minx PJ et al: The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Nature 2003; 423: 825-837.
    • (2003) Nature , vol.423 , pp. 825-837
    • Skaletsky, H.1    Kuroda-Kawaguchi, T.2    Minx, P.J.3
  • 18
    • 84868692234 scopus 로고    scopus 로고
    • A calibrated human Y-chromosomal phylogeny based on resequencing
    • Wei W, Ayub Q, Chen Y et al: A calibrated human Y-chromosomal phylogeny based on resequencing. Genome Res 2013; 23: 388-395.
    • (2013) Genome Res , vol.23 , pp. 388-395
    • Wei, W.1    Ayub, Q.2    Chen, Y.3
  • 19
    • 77951535406 scopus 로고    scopus 로고
    • Evidence that replication-Associated mutation alone does not explain between-chromosome differences in substitution rates
    • Pink CJ, Swaminathan SK, Dunham I, Rogers J, Ward A, Hurst LD: Evidence that replication-Associated mutation alone does not explain between-chromosome differences in substitution rates. Genome Biol Evol 2009; 1: 13-22.
    • (2009) Genome Biol Evol , vol.1 , pp. 13-22
    • Pink, C.J.1    Swaminathan, S.K.2    Dunham, I.3    Rogers, J.4    Ward, A.5    Hurst, L.D.6
  • 20
    • 80053452843 scopus 로고    scopus 로고
    • Do variations in substitution rates and male mutation bias correlate with life-history traits? A study of 32 mammalian genomes
    • Wilson Sayres MA, Venditti C, Pagel M, Makova KD: Do variations in substitution rates and male mutation bias correlate with life-history traits? A study of 32 mammalian genomes. Evolution 2011; 65: 2800-2815.
    • (2011) Evolution , vol.65 , pp. 2800-2815
    • Wilson Sayres, M.A.1    Venditti, C.2    Pagel, M.3    Makova, K.D.4
  • 21
    • 33244455058 scopus 로고    scopus 로고
    • Strong and weak male mutation bias at different sites in the primate genomes: Insights from the human-chimpanzee comparison
    • Taylor J, Tyekucheva S, Zody M, Chiaromonte F, Makova KD: Strong and weak male mutation bias at different sites in the primate genomes: insights from the human-chimpanzee comparison. Mol Biol Evol 2006; 23: 565-573.
    • (2006) Mol Biol Evol , vol.23 , pp. 565-573
    • Taylor, J.1    Tyekucheva, S.2    Zody, M.3    Chiaromonte, F.4    Makova, K.D.5
  • 22
    • 84860583402 scopus 로고    scopus 로고
    • The role of background selection in shaping patterns of molecular evolution and variation: Evidence from variability on the Drosophila X chromosome
    • Charlesworth B: The role of background selection in shaping patterns of molecular evolution and variation: evidence from variability on the Drosophila X chromosome. Genetics 2012; 191: 233-246.
    • (2012) Genetics , vol.191 , pp. 233-246
    • Charlesworth, B.1
  • 24
    • 68249102048 scopus 로고    scopus 로고
    • Evolution and survival on eutherian sex chromosomes
    • Wilson MA, Makova KD: Evolution and survival on eutherian sex chromosomes. PLoS Genet 2009; 5: e1000568.
    • (2009) PLoS Genet , vol.5
    • Wilson, M.A.1    Makova, K.D.2
  • 25
    • 0242298320 scopus 로고    scopus 로고
    • Polymorphism for a 1.6-Mb deletion of the human y chromosome persists through balance between recurrent mutation and haploid selection
    • Repping S, Skaletsky H, Brown L et al: Polymorphism for a 1.6-Mb deletion of the human Y chromosome persists through balance between recurrent mutation and haploid selection. Nat Genet 2003; 35: 247-251.
    • (2003) Nat Genet , vol.35 , pp. 247-251
    • Repping, S.1    Skaletsky, H.2    Brown, L.3
  • 26
    • 33644761962 scopus 로고    scopus 로고
    • Sex chromosome specialization and degeneration in mammals
    • Graves JA: Sex chromosome specialization and degeneration in mammals. Cell 2006; 124: 901-914.
    • (2006) Cell , vol.124 , pp. 901-914
    • Graves, J.A.1
  • 27
    • 2642530984 scopus 로고    scopus 로고
    • A family of human y chromosomes has dispersed throughout northern Eurasia despite a 1.8-Mb deletion in the azoospermia factor c region
    • Repping S, van Daalen SK, Korver CM et al: A family of human Y chromosomes has dispersed throughout northern Eurasia despite a 1.8-Mb deletion in the azoospermia factor c region. Genomics 2004; 83: 1046-1052.
    • (2004) Genomics , vol.83 , pp. 1046-1052
    • Repping, S.1    Van Daalen, S.K.2    Korver, C.M.3
  • 29
    • 65349195129 scopus 로고    scopus 로고
    • Founders, drift, and infidelity: The relationship between y chromosome diversity and patrilineal surnames
    • King TE, Jobling MA: Founders, drift, and infidelity: the relationship between Y chromosome diversity and patrilineal surnames. Mol Biol Evol 2009; 26: 1093-1102.
    • (2009) Mol Biol Evol , vol.26 , pp. 1093-1102
    • King, T.E.1    Jobling, M.A.2
  • 30
    • 84856680068 scopus 로고    scopus 로고
    • The impact of recent events on human genetic diversity
    • Jobling MA: The impact of recent events on human genetic diversity. Philos Trans R Soc Lond B Biol Sci 2012; 367: 793-799.
    • (2012) Philos Trans R Soc Lond B Biol Sci , vol.367 , pp. 793-799
    • Jobling, M.A.1
  • 31
    • 73949098544 scopus 로고    scopus 로고
    • Y chromosome diversity, human expansion, drift, and cultural evolution
    • Chiaroni J, Underhill PA, Cavalli-Sforza LL: Y chromosome diversity, human expansion, drift, and cultural evolution. Proc Natl Acad Sci USA 2009; 106: 20174-20179.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 20174-20179
    • Chiaroni, J.1    Underhill, P.A.2    Cavalli-Sforza, L.L.3
  • 32
    • 84865856910 scopus 로고    scopus 로고
    • Revising the human mutation rate: Implications for understanding human evolution
    • Scally A, Durbin R: Revising the human mutation rate: implications for understanding human evolution. Nat Rev Genet 2012; 13: 745-753.
    • (2012) Nat Rev Genet , vol.13 , pp. 745-753
    • Scally, A.1    Durbin, R.2
  • 34
    • 33745476745 scopus 로고    scopus 로고
    • Advancing age has differential effects on DNA damage, chromatin integrity, gene mutations, and aneuploidies in sperm
    • Wyrobek AJ, Eskenazi B, Young S et al: Advancing age has differential effects on DNA damage, chromatin integrity, gene mutations, and aneuploidies in sperm. Proc Natl Acad Sci USA 2006; 103: 9601-9606.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 9601-9606
    • Wyrobek, A.J.1    Eskenazi, B.2    Young, S.3
  • 36
    • 84906258440 scopus 로고    scopus 로고
    • CDC
    • CDC: http://www.cdc.gov/nchs/fastats/births.htm. 2010.
    • (2010)
  • 40
    • 84861388520 scopus 로고    scopus 로고
    • Global genetic variation at OAS1 provides evidence of archaic admixture in Melanesian populations
    • Mendez FL, Watkins JC, Hammer MF: Global genetic variation at OAS1 provides evidence of archaic admixture in Melanesian populations. Mol Biol Evol 2012; 29: 1513-1520.
    • (2012) Mol Biol Evol , vol.29 , pp. 1513-1520
    • Mendez, F.L.1    Watkins, J.C.2    Hammer, M.F.3
  • 41
    • 61849141216 scopus 로고    scopus 로고
    • Is Homo heidelbergensis a distinct species? New insight on the Mauer mandible
    • Mounier Al Marchal Fo, Condemi S: Is Homo heidelbergensis a distinct species? New insight on the Mauer mandible. J Hum Evol 2009; 56: 219-246.
    • (2009) J Hum Evol , vol.56 , pp. 219-246
    • Al Marchal Fo, M.1    Condemi, S.2
  • 42
    • 0029744335 scopus 로고    scopus 로고
    • Significance of some previously unrecognized apomorphies in the nasal region of Homo neanderthalensis
    • Schwartz JH, Tattersall I: Significance of some previously unrecognized apomorphies in the nasal region of Homo neanderthalensis. Proc Natl Acad Sci USA 1996; 93: 10852-10854.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 10852-10854
    • Schwartz, J.H.1    Tattersall, I.2
  • 43
    • 33845809154 scopus 로고    scopus 로고
    • High-resolution U-series dates from the Sima de los Huesos hominids yields: Implications for the evolution of the early Neanderthal lineage
    • Bischoff JL, Williams RW, Rosenbauer RJ et al: High-resolution U-series dates from the Sima de los Huesos hominids yields: implications for the evolution of the early Neanderthal lineage. J Archaeol Sci 2007; 34: 763-770.
    • (2007) J Archaeol Sci , vol.34 , pp. 763-770
    • Bischoff, J.L.1    Williams, R.W.2    Rosenbauer, R.J.3
  • 44
    • 33750374252 scopus 로고    scopus 로고
    • Late survival of Neanderthals at the southernmost extreme of Europe
    • Finlayson C, Pacheco FG, Rodríguez-Vidal J et al: Late survival of Neanderthals at the southernmost extreme of Europe. Nature 2006; 443: 850-853.
    • (2006) Nature , vol.443 , pp. 850-853
    • Finlayson, C.1    Pacheco, F.G.2    Rodríguez-Vidal, J.3
  • 45
    • 0037564967 scopus 로고    scopus 로고
    • Pleistocene Homo sapiens from Middle Awash, Ethiopia
    • White TD, Asfaw B, DeGusta D et al: Pleistocene Homo sapiens from Middle Awash, Ethiopia. Nature 2003; 423: 742-747.
    • (2003) Nature , vol.423 , pp. 742-747
    • White, T.D.1    Asfaw, B.2    Degusta, D.3
  • 46
    • 0038240535 scopus 로고    scopus 로고
    • Stratigraphic, chronological and behavioural contexts of Pleistocene Homo sapiens from Middle Awash, Ethiopia
    • Clark JD, Beyene Y, WoldeGabriel G et al: Stratigraphic, chronological and behavioural contexts of Pleistocene Homo sapiens from Middle Awash, Ethiopia. Nature 2003; 423: 747-752.
    • (2003) Nature , vol.423 , pp. 747-752
    • Clark, J.D.1    Beyene, Y.2    Woldegabriel, G.3
  • 47
    • 0023163377 scopus 로고
    • Mitochondrial DNA and human evolution
    • Cann RL, Stoneking M, Wilson AC: Mitochondrial DNA and human evolution. Nature 1987; 325: 31-36.
    • (1987) Nature , vol.325 , pp. 31-36
    • Cann, R.L.1    Stoneking, M.2    Wilson, A.C.3
  • 49
    • 84864576715 scopus 로고    scopus 로고
    • Evolutionary history and adaptation from high-coverage whole-genome sequences of diverse African hunter-gatherers
    • Lachance J, Vernot B, Elbers Clara C et al: Evolutionary history and adaptation from high-coverage whole-genome sequences of diverse African hunter-gatherers. Cell 2012; 150: 457-469.
    • (2012) Cell , vol.150 , pp. 457-469
    • Lachance, J.1    Vernot, B.2    Elbers Clara, C.3
  • 50
    • 1842837782 scopus 로고    scopus 로고
    • DNA polymorphism in a worldwide sample of human X chromosomes
    • Yu N, Fu Y-X, Li W-H: DNA polymorphism in a worldwide sample of human X chromosomes. Mol Biol Evol 2002; 19: 2131-2141.
    • (2002) Mol Biol Evol , vol.19 , pp. 2131-2141
    • Yu, N.1    Fu, Y.-X.2    Li, W.-H.3
  • 51
    • 0344436038 scopus 로고    scopus 로고
    • DNA sequence variation in a non-coding region of low recombination on the human X chromosome
    • Kaessmann H, Heifiig F, Von Haeseler A, Paäbo S: DNA sequence variation in a non-coding region of low recombination on the human X chromosome. Nat Genet 1999; 22: 78-81.
    • (1999) Nat Genet , vol.22 , pp. 78-81
    • Kaessmann, H.1    Heifiig, F.2    Von Haeseler, A.3    Paäbo, S.4
  • 52
    • 77249155642 scopus 로고    scopus 로고
    • Complete Khoisan and Bantu genomes from southern Africa
    • Schuster SC, Miller W, Ratan A et al: Complete Khoisan and Bantu genomes from southern Africa. Nature 2010; 463: 943-947.
    • (2010) Nature , vol.463 , pp. 943-947
    • Schuster, S.C.1    Miller, W.2    Ratan, A.3
  • 53
    • 84859486099 scopus 로고    scopus 로고
    • A 'Copernican' reassessment of the human mitochondrial DNA tree from its root
    • Behar DM, van Oven M, Rosset S et al: A 'Copernican' reassessment of the human mitochondrial DNA tree from its root. Am J Hum Genet 2012; 90: 675-684.
    • (2012) Am J Hum Genet , vol.90 , pp. 675-684
    • Behar, D.M.1    Van Oven, M.2    Rosset, S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.