Respiratory glycerol metabolism of Actinobacillus succinogenes 130Z for succinate production

Journal of Industrial Microbiology and Biotechnology

Volumn 41, Issue 9, 2014, Pages 1339-1352

  Schindler, Bryan D ^a,b   Joshi, Rajasi V ^a   Vieille, Claire ^a,c  

^a Department of Microbiology and Molecular Genetics Michigan State University ^*  (United States)

^b VETERANS AFFAIRS MEDICAL CENTER   (United States)

^c Michigan State University   (United States)

Author keywords

1,3 Propanediol; Actinobacillus succinogenes; Continuous culture; Fermentation; Glycerol; Microaerobic; Succinate

Indexed keywords

ACETIC ACID; BIODIESEL; CARBON; CARBON DIOXIDE; DIMETHYL SULFOXIDE; FORMIC ACID; GENOMIC DNA; GLUCOSE; GLYCEROL; NITRATE; NITRITE; OXIDOREDUCTASE; SUCCINIC ACID; 1,3-PROPANEDIOL; PROPANEDIOL DERIVATIVE;

ACTINOBACILLUS SUCCINOGENES; ANAEROBIC FERMENTATION; ARTICLE; BACTERIAL GENOME; BACTERIUM CULTURE; BIOFUEL PRODUCTION; BIOMASS; BIOMASS PRODUCTION; CHEMICAL REACTION; CLOSTRIDIUM BUTYRICUM; CONTINUOUS CULTURE; ENZYME ACTIVITY; ENZYME ASSAY; FERMENTATION; NONHUMAN; RESPIRATORY CHAIN; ACTINOBACILLUS; METABOLISM; MICROBIOLOGY; OXIDATION REDUCTION REACTION;

ACTINOBACILLUS SUCCINOGENES; ACTINOBACILLUS SUCCINOGENES 130Z;

ACTINOBACILLUS; DIMETHYL SULFOXIDE; FERMENTATION; GLYCEROL; INDUSTRIAL MICROBIOLOGY; OXIDATION-REDUCTION; PROPYLENE GLYCOLS; SUCCINIC ACID;

EID: 84906215913     PISSN: 13675435     EISSN: 14765535     Source Type: Journal    
DOI: 10.1007/s10295-014-1480-x     Document Type: Article

References (52)

1. Alexeeva S, de Kort B, Sawers G, Hellingwerf KJ, de Mattos MJ (2000) Effects of limited aeration and of the ArcAB system on intermediary pyruvate catabolism in Escherichia coli. J Bacteriol 182:4934-4940. doi:10.1128/JB.182. 17.4934-4940.2000 (Pubitemid 30641819)
2. Almeida JRM, Favaro LCL, Quirino BF (2012) Biodiesel biorefinery: opportunities and challenges for microbial production of fuels and chemicals from glycerol waste. Biotechnol Biofuels 5 doi:10.1186/1754-6834-5-48
3. Atlas RM (2005) In: Handbook of media for environmental microbiology. Taylor & Francis, Boca Raton, p 1152
4. Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (eds) (1993) Current protocols in molecular biology. Greene Publishing & Wiley, New York
5. Biebl H, Menzel K, Zeng A-P, Deckwer W-D (1999) Microbial production of 1,3-propanediol. Appl Microbiol Biotechnol 52:289-297 (Pubitemid 29465983)
6. Bilous PT, Weiner JH (1985) Dimethyl sulfoxide reductase activity by anaerobically grown Escherichia coli HB101. J Bacteriol 162:1151-1155 (Pubitemid 15012275)
7. Blankschien MD, Clomburg J, Gonzalez R (2010) Metabolic engineering of Escherichia coli for the production of succinate from glycerol. Metab Eng 12:409-419. doi:10.1016/j.ymben.2010.06.002
8. Boenigk R, Bowien S, Gottschalk G (1993) Fermentation of glycerol to 1,3-propanediol in continuous cultures of Citrobacter freundii. Appl Microbiol Biotechnol 38:453-457 (Pubitemid 23042578)
9. Booth IR (2005) Glycerol and methylglyoxal metabolism. EcoSal Plus. doi:10.1128/ecosalplus.3.4.3
10. Carvalho M, Mato M, Roca C, Reis MA (2013) Succinic acid production from glycerol by Actinobacillus succinogenes using dimethylsulfoxide as electron acceptor. New Biotechnol S1871-S6784. doi:10.1016/j.nbt.2013.06.006
11. Cole J (1996) Nitrate reduction to ammonia by enteric bacteria: redundancy, or a strategy for survival during oxygen starvation? FEMS Microbiol Lett 136:1-11
12. Coursolle D, Gralnick JA (2010) Modularity of the Mtr respiratory pathway of Shewanella oneidensis strain MR-1. Mol Microbiol 77:995-1008. doi:10.1111/j.1365-2958.2010.07266.x
13. Dickie P, Weiner JH (1979) Purification and characterization of membrane-bound fumarate reductase from anaerobically grown Escherichia coli. Can J Biochem 57:813-821 (Pubitemid 9241904)
14. Durnin G, Clomburg J, Yeates Z, Alvarez PJ, Zygourakis K, Campbell P, Gonzalez R (2009) Understanding and harnessing the microaerobic metabolism of glycerol in Escherichia coli. Biotechnol Bioeng 103:148-161. doi:10.1002/bit.22246
15. Goh EB, Bledsoe PJ, Chen L, Gyaneshwar P, Stewart V, Igo MM (2005) Hierarchical control of anaerobic gene expression in Escherichia coli K-12: the nitrate-responsive NarX-NarL regulatory system represses synthesis of the fumarate-responsive DcuS-DcuR regulatory system. J Bacteriol 187:4890-4899. doi:10.1128/jb.187.14.4890-4899.2005 (Pubitemid 40962206)
16. González-Pajuelo M, Meynial-Salles I, Mendes F, Soucaille P, Vasconcelos I (2006) Microbial conversion of glycerol to 1,3-propanediol: physiological comparison of a natural producer, Clostridium butyricum VPI 3266, and an engineered strain, Clostridium acetobutylicum DG1(pSPD5). Appl Environ Microbiol 72:96-101. doi:10.1128/AEM.72.1.96-101.2006
17. Gottschalk G (1986) Bacterial metabolism, 2nd edn. Springer, New York
18. Joshi RV, Schindler BD, McPherson N, Tiwari K, Vieille C (2014) A markerless gene knockout method for Actinobacillus succinogenes 130Z based on natural transformation. Appl Environ Microbiol 80:3053-3061. doi:10.1128/AEM.00492-14
19. Kaspar HF, Tiedje JM (1981) Dissimilatory reduction of nitrate and nitrite in the bovine rumen: nitrous oxide production and effect of acetylene. Appl Environ Microbiol 41:705-709 (Pubitemid 11158719)
20. Kim P, Laivenieks M, McKinlay J, Vieille C, Zeikus JG (2004) Construction of a shuttle vector for the overexpression of recombinant proteins in Actinobacillus succinogenes. Plasmid 51:108-115 (Pubitemid 38293447)
21. Lee PC, Lee SY, Chang HN (2010) Kinetic study on succinic acid and acetic acid formation during continuous cultures of Anaerobiospirillum succiniciproducens grown on glycerol. Bioprocess Biosys Engin 33:465-471. doi:10.1007/s00449-009-0355-4
22. Lee PC, Lee SY, Hong SH, Chang HN (2002) Isolation and characterization of a new succinic acid-producing bacterium, Mannheimia succiniciproducens MBEL55E, from bovine rumen. Appl Microbiol Biotechnol 58:663-668. doi:10.1007/s00253-002-0935-6
23. Lee PC, Lee WG, Lee SY, Chang HN (2001) Succinic acid production with reduced by-product formation in the fermentation of Anaerobiospirillum succiniciproducens using glycerol as a carbon source. Biotechnol Bioeng 72:41-48. doi:10.1002/1097-0290(20010105)72:1〈41:AID-BIT6〉3.0.CO;2-N (Pubitemid 32085891)
24. Macfadyen LP, Redfield RJ (1996) Life in mucus: sugar metabolism in Haemophilus influenzae. Res Microbiol 147:541-551 (Pubitemid 26338136)
25. McKinlay JB, Laivenieks M, Schindler BD, McKinlay A, Siddaramappa S, Challacombe JF, Lowry SR, Clum A, Lapidus AL, Burkhart KB, Harkins V, Vieille C (2010) A genomic perspective on the potential of Actinobacillus succinogenes for industrial succinate production. BMC Genom 11:680. doi:10.1186/1471-2164-11-680
26. 2 concentrations. Metab Eng 10:55-68. doi:10.1016/j.ymben.2007.08.004
27. McKinlay JB, Vieille C, Zeikus JG (2007) Prospects for a biobased succinate industry. Appl Microbiol Biotechnol 76:727-740. doi:10.1007/s00253- 007-1057-y
28. McKinlay JB, Zeikus JG, Vieille C (2005) Insights into the Actinobacillus succinogenes fermentative metabolism in a chemically defined growth medium. Appl Environ Microbiol 71:6651-6656 (Pubitemid 43194148)
29. Murarka A, Dharmadi Y, Yazdani S, Gonzalez R (2008) Fermentative utilization of glycerol by Escherichia coli and its implications for the production of fuels and chemicals. Appl Environ Microbiol 74:1124-1135. doi:10.1128/AEM.02192-07 (Pubitemid 351287084)
30. Park DH, Zeikus JG (1999) Utilization of electrically reduced neutral red by Actinobacillus succinogenes: physiological function of neutral red in membrane-driven fumarate reduction and energy conservation. J Bacteriol 181:2403-2410 (Pubitemid 29181562)
31. Poole RK, Cook GM (2000) Redundancy of aerobic respiratory chains in bacteria? Routes, reasons and regulation. Adv Microb Physiol 43:165-224 (Pubitemid 30481125)
32. Potter LC, Millington P, Griffiths L, Thomas GH, Cole JA (1999) Competition between Escherichia coli strains expressing either a periplasmic or a membrane-bound nitrate reductase: does Nap confer a selective advantage during nitrate-limited growth? Biochem J 344:77-84. doi:10.1042/0264-6021:3440077
33. Scholten E, Dägele D (2008) Succinic acid production by a newly isolated bacterium. Biotechnol Lett 30:2143-2146. doi:10.1007/s10529-008-9806-2
34. Schroder H, Haefner S, Von Abendroth G, Hollmann R, Raddatz A, Ernst H, Gurski H (2014) Microbial succinic acid producers and purification of succinic acid. US patent US 8,673,598 B2
35. Scholten E, Dägele D, Haefner S, Schröder H (2009) Microbial succinic acid producer Mannheimia succiniciproducens DD1
36. Scott RI, Yarlett N, Hillman K, Williams TN, Williams AG, Lloyd D (1983) The presence of oxygen in rumen liquor and its effects on methanogenesis. J Appl Bacteriol 55:143-149. doi:10.1111/j.1365-2672.1983.tb02658.x
37. Shalel-Levanon S, San KY, Bennett GN (2005) Effect of ArcA and FNR on the expression of genes related to the oxygen regulation and glycolysis pathway in Escherichia coli under microaerobic growth conditions. Biotechnol Bioeng 92:147-159. doi:10.1002/bit.20583 (Pubitemid 41657876)
38. Shalel-Levanon S, San KY, Bennett GN (2005) Effect of oxygen on the Escherichia coli ArcA and FNR regulation systems and metabolic responses. Biotechnol Bioeng 89:556-564
39. Simon J (2002) Enzymology and bioenergetics of respiratory nitrite ammonification. FEMS Microbiol Rev 26:285-309. doi:10.1111/j.1574-6976.2002. tb00616.x
40. Stephanopoulos GN, Aristidou A, Nielsen J (1998) Metabolic engineering. Principles and methodologies. Academic Press, London
41. Stewart V (1988) Nitrate respiration in relation to facultative metabolism in enterobacteria. Microbiol Rev 52:190-232
42. Tseng CP, Albrecht J, Gunsalus RP (1996) Effect of microaerophilic cell growth conditions on expression of the aerobic (cyo-ABCDE and cydAB) and anaerobic (narGHJI, frdABCD, and dmsABC) respiratory pathway genes in Escherichia coli. J Bacteriol 178:1094-1098 (Pubitemid 26048026)
43. Unden G, Bongaerts J (1997) Alternative respiratory pathways of Escherichia coli: energetics and transcriptional regulation in response to electron acceptors. Biochim Biophys Acta 1320:217-234. doi:10.1016/S0005- 2728(97)00034-0 (Pubitemid 27283364)
44. Unden G, Dunnwald P (2008) The aerobic and anaerobic respiratory chain of Escherichia coli and Salmonella enterica: enzymes and energetics. EcoSal Plus. doi:10.1128/ecosalplus.3.2.2
45. van der Werf MJ, Guettler MV, Jain MK, Zeikus JG (1997) Environmental and physiological factors affecting the succinate product ratio during carbohydrate fermentation by Actinobacillus sp. 130Z. Arch Microbiol 167:332-342 (Pubitemid 27245210)
46. Vlysidis A, Binns M, Webb C, Theodoropoulos C (2011) Glycerol utilisation for the production of chemicals: conversion to succinic acid, a combined experimental and computational study. Biochem Eng J 58-59:1-11. doi:10.1016/j.bej.2011.07.004
47. Wagner AFV, Schultz S, Bomke J, Pils T, Lehmann WD, Knappe J (2001) YfiD of Escherichia coli and Y061 of bacteriophage T4 as autonomous glycyl radical cofactors reconstituting the catalytic center of oxygen-fragmented pyruvate formate-lyase. Biochem Biophys Res Comm 285:456-462. doi:10.1006/bbrc.2001.5186 (Pubitemid 32918092)
48. Weiner JH, MacIsaac DP, Bishop RE, Bilous PT (1988) Purification and properties of Escherichia coli dimethyl sulfoxide reductase, an iron-sulfur molybdoenzyme with broad substrate specificity. J Bacteriol 170:1505-1510
49. Werpy T, Petersen G (2004) Top value added chemicals from biomass: volume I-results of screening for potential candidates from sugars and synthetic gas. US Department of Energy
50. Yazdani S, Gonzalez R (2007) Anaerobic fermentation of glycerol: a path to economic viability for the biofuels industry. Curr Opin Biotechnol 18:213-219. doi:10.1016/j.copbio.2007.05.002 (Pubitemid 46880288)
51. Zeikus JG, Jain MK, Elankovan P (1999) Biotechnology of succinic acid production and markets for derived industrial products. Appl Microbiol Biotechnol 51:545-552 (Pubitemid 29266304)
52. Zhang XL, Shanmugam KT, Ingram LO (2010) Fermentation of glycerol to succinate by metabolically engineered strains of Escherichia coli. Appl Environ Microbiol 76:2397-2401. doi:10.1128/AEM.02902-09