메뉴 건너뛰기




Volumn 1359, Issue , 2014, Pages 91-99

Optimizing a ultrahigh pressure liquid chromatography-time of flight-mass spectrometry approach using a novel sub-2μm core-shell particle for in depth lipidomic profiling of Caenorhabditis elegans

Author keywords

Caenorhabditis elegans; Lipidomics; Mass spectrometry; Method development; Sub 2 m core shell column

Indexed keywords

DEPTH PROFILING; LIPIDS; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY;

EID: 84906045986     PISSN: 00219673     EISSN: 18733778     Source Type: Journal    
DOI: 10.1016/j.chroma.2014.07.021     Document Type: Article
Times cited : (45)

References (31)
  • 1
    • 25144443228 scopus 로고    scopus 로고
    • Cellular lipidomics
    • van Meer G. Cellular lipidomics. EMBO J. 2005, 24:3159-3165.
    • (2005) EMBO J. , vol.24 , pp. 3159-3165
    • van Meer, G.1
  • 3
    • 18344393519 scopus 로고    scopus 로고
    • Shotgun lipidomics: electrospray ionization mass spectrometric analysis and quantitation of cellular lipidomes directly from crude extracts of biological samples
    • Han X., Gross R.W. Shotgun lipidomics: electrospray ionization mass spectrometric analysis and quantitation of cellular lipidomes directly from crude extracts of biological samples. Mass Spectrom. Rev. 2005, 24:367-412.
    • (2005) Mass Spectrom. Rev. , vol.24 , pp. 367-412
    • Han, X.1    Gross, R.W.2
  • 4
    • 38449086882 scopus 로고    scopus 로고
    • Shotgun lipidomics by tandem mass spectrometry under data-dependent acquisition control
    • Academic Press, H.A. Brown (Ed.)
    • Schwudke D., Liebisch G., Herzog R., Schmitz G., Shevchenko A. Shotgun lipidomics by tandem mass spectrometry under data-dependent acquisition control. Methods in Enzymology 2007, 175-191. Academic Press. H.A. Brown (Ed.).
    • (2007) Methods in Enzymology , pp. 175-191
    • Schwudke, D.1    Liebisch, G.2    Herzog, R.3    Schmitz, G.4    Shevchenko, A.5
  • 7
    • 84863442437 scopus 로고    scopus 로고
    • Separation of cis-trans phospholipid isomers using reversed phase LC with high resolution MS detection
    • Bird S.S., Marur V.R., Stavrovskaya I.G., Kristal B.S. Separation of cis-trans phospholipid isomers using reversed phase LC with high resolution MS detection. Anal. Chem. 2012, 84:5509-5517.
    • (2012) Anal. Chem. , vol.84 , pp. 5509-5517
    • Bird, S.S.1    Marur, V.R.2    Stavrovskaya, I.G.3    Kristal, B.S.4
  • 9
    • 84873467618 scopus 로고    scopus 로고
    • Genetics of Aging inCaenorhabditis elegans
    • A. Antebi, Genetics of Aging inCaenorhabditis elegans, PLoS Genet 3 (2007) e129.
    • (2007) PLoS Genet , vol.3
    • Antebi, A.1
  • 10
    • 0033965253 scopus 로고    scopus 로고
    • Caenorhabditis elegans: a model genetic host to study Pseudomonas aeruginosa pathogenesis
    • Tan M.-W., Ausubel F.M. Caenorhabditis elegans: a model genetic host to study Pseudomonas aeruginosa pathogenesis. Curr. Opin. Microbiol. 2000, 3:29-34.
    • (2000) Curr. Opin. Microbiol. , vol.3 , pp. 29-34
    • Tan, M.-W.1    Ausubel, F.M.2
  • 11
    • 0033582314 scopus 로고    scopus 로고
    • Killing of Caenorhabditis elegans by Pseudomonas aeruginosa used to model mammalian bacterial pathogenesis
    • Tan M.-W., Mahajan-Miklos S., Ausubel F.M. Killing of Caenorhabditis elegans by Pseudomonas aeruginosa used to model mammalian bacterial pathogenesis. Proc. Natl. Acad. Sci. U.S.A. 1999, 96:715-720.
    • (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , pp. 715-720
    • Tan, M.-W.1    Mahajan-Miklos, S.2    Ausubel, F.M.3
  • 15
    • 33847414492 scopus 로고    scopus 로고
    • Novel application of reversed-phase UPLC-oaTOF-MS for lipid analysis in complex biological mixtures: a new tool for lipidomics
    • Rainville P.D., Stumpf C.L., Shockcor J.P., Plumb R.S., Nicholson J.K. Novel application of reversed-phase UPLC-oaTOF-MS for lipid analysis in complex biological mixtures: a new tool for lipidomics. J. Proteome Res. 2006, 6:552-558.
    • (2006) J. Proteome Res. , vol.6 , pp. 552-558
    • Rainville, P.D.1    Stumpf, C.L.2    Shockcor, J.P.3    Plumb, R.S.4    Nicholson, J.K.5
  • 16
    • 84906071095 scopus 로고    scopus 로고
    • Development of a lipid profiling system using reverse-phase liquid chromatography coupled to high-resolution mass spectrometry with rapid polarity switching and an automated lipid identification software
    • T. Yamada, T. Uchikata, S. Sakamoto, Y. Yokoi, E. Fukusaki, T. Bamba, Development of a lipid profiling system using reverse-phase liquid chromatography coupled to high-resolution mass spectrometry with rapid polarity switching and an automated lipid identification software, J. Chromatogr. A.
    • J. Chromatogr. A
    • Yamada, T.1    Uchikata, T.2    Sakamoto, S.3    Yokoi, Y.4    Fukusaki, E.5    Bamba, T.6
  • 17
    • 84861434263 scopus 로고    scopus 로고
    • A simplified procedure for semi-targeted lipidomic analysis of oxidized phosphatidylcholines induced by UVA irradiation
    • Gruber F., Bicker W., Oskolkova O.V., Tschachler E., Bochkov V.N. A simplified procedure for semi-targeted lipidomic analysis of oxidized phosphatidylcholines induced by UVA irradiation. J. Lipid Res. 2012, 53:1232-1242.
    • (2012) J. Lipid Res. , vol.53 , pp. 1232-1242
    • Gruber, F.1    Bicker, W.2    Oskolkova, O.V.3    Tschachler, E.4    Bochkov, V.N.5
  • 18
    • 38549152194 scopus 로고    scopus 로고
    • Principles of bioactive lipid signalling: lessons from sphingolipids
    • Hannun Y.A., Obeid L.M. Principles of bioactive lipid signalling: lessons from sphingolipids. Nat. Rev. Mol. Cell. Biol. 2008, 9:139-150.
    • (2008) Nat. Rev. Mol. Cell. Biol. , vol.9 , pp. 139-150
    • Hannun, Y.A.1    Obeid, L.M.2
  • 19
    • 33846436789 scopus 로고    scopus 로고
    • A steroid hormone that extends the lifespan of Caenorhabditis elegans
    • Broué F., Liere P., Kenyon C., Baulieu E.-E. A steroid hormone that extends the lifespan of Caenorhabditis elegans. Aging Cell 2007, 6:87-94.
    • (2007) Aging Cell , vol.6 , pp. 87-94
    • Broué, F.1    Liere, P.2    Kenyon, C.3    Baulieu, E.-E.4
  • 24
    • 84855465409 scopus 로고    scopus 로고
    • Analyses of C. elegans fat metabolic pathways
    • Academic Press, (Chapter 13), H.R. Joel, S. Andrew (Eds.)
    • Barros A.G.d.A., Liu J., Lemieux G.A., Mullaney B.C., Ashrafi K. Analyses of C. elegans fat metabolic pathways. Methods in Cell Biology 2012, 383-407. Academic Press, (Chapter 13). H.R. Joel, S. Andrew (Eds.).
    • (2012) Methods in Cell Biology , pp. 383-407
    • Barros, A.1    Liu, J.2    Lemieux, G.A.3    Mullaney, B.C.4    Ashrafi, K.5
  • 25
    • 79953719716 scopus 로고    scopus 로고
    • More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS
    • Michalski A., Cox J., Mann M. More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS. J. Proteome Res. 2011, 10:1785-1793.
    • (2011) J. Proteome Res. , vol.10 , pp. 1785-1793
    • Michalski, A.1    Cox, J.2    Mann, M.3
  • 26
    • 0345098355 scopus 로고    scopus 로고
    • Charting molecular composition of phosphatidylcholines by fatty acid scanning and ion trap MS3 fragmentation
    • Ekroos K., Ejsing C.S., Bahr U., Karas M., Simons K., Shevchenko A. Charting molecular composition of phosphatidylcholines by fatty acid scanning and ion trap MS3 fragmentation. J. Lipid Res. 2003, 44:2181-2192.
    • (2003) J. Lipid Res. , vol.44 , pp. 2181-2192
    • Ekroos, K.1    Ejsing, C.S.2    Bahr, U.3    Karas, M.4    Simons, K.5    Shevchenko, A.6
  • 27
    • 77952035934 scopus 로고    scopus 로고
    • Comprehensive LC-MSE lipidomic analysis using a shotgun approach and its application to biomarker detection and identification in osteoarthritis patients
    • Castro-Perez J.M., Kamphorst J., DeGroot J., Lafeber F., Goshawk J., Yu K., Shockcor J.P., Vreeken R.J., Hankemeier T. Comprehensive LC-MSE lipidomic analysis using a shotgun approach and its application to biomarker detection and identification in osteoarthritis patients. J. Proteome Res. 2010, 9:2377-2389.
    • (2010) J. Proteome Res. , vol.9 , pp. 2377-2389
    • Castro-Perez, J.M.1    Kamphorst, J.2    DeGroot, J.3    Lafeber, F.4    Goshawk, J.5    Yu, K.6    Shockcor, J.P.7    Vreeken, R.J.8    Hankemeier, T.9
  • 28
    • 84874364848 scopus 로고    scopus 로고
    • Nearline acquisition and processing of liquid chromatography-tandem mass spectrometry data
    • Neumann S., Thum A., Böttcher C. Nearline acquisition and processing of liquid chromatography-tandem mass spectrometry data. Metabolomics 2013, 9:84-91.
    • (2013) Metabolomics , vol.9 , pp. 84-91
    • Neumann, S.1    Thum, A.2    Böttcher, C.3
  • 30
    • 84881476562 scopus 로고    scopus 로고
    • LipidBlast in silico tandem mass spectrometry database for lipid identification
    • Kind T., Liu K.-H., Lee D.Y., DeFelice B., Meissen J.K., Fiehn O. LipidBlast in silico tandem mass spectrometry database for lipid identification. Nat. Methods 2013, 10:755-758.
    • (2013) Nat. Methods , vol.10 , pp. 755-758
    • Kind, T.1    Liu, K.-H.2    Lee, D.Y.3    DeFelice, B.4    Meissen, J.K.5    Fiehn, O.6
  • 31
    • 77952302069 scopus 로고    scopus 로고
    • In silico fragmentation for computer assisted identification of metabolite mass spectra
    • Wolf S., Schmidt S., Muller-Hannemann M., Neumann S. In silico fragmentation for computer assisted identification of metabolite mass spectra. BMC Bioinform. 2010, 11:148.
    • (2010) BMC Bioinform. , vol.11 , pp. 148
    • Wolf, S.1    Schmidt, S.2    Muller-Hannemann, M.3    Neumann, S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.