Shotgun Lipidomics by Tandem Mass Spectrometry under Data-Dependent Acquisition Control

Methods in Enzymology

Volumn 433, Issue , 2007, Pages 175-191

  Schwudke, Dominik ^a   Liebisch, Gerhard ^b   Herzog, Ronny ^a   Schmitz, Gerd ^b   Shevchenko, Andrej ^a  

^a MAX PLANCK INSTITUTE OF MOLECULAR CELL BIOLOGY AND GENETICS   (Germany)

^b UNIVERSITY OF REGENSBURG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CHOLESTEROL; CHOLESTEROL ESTER; LIPID;

ANALYTIC METHOD; ANALYZER; AUTOMATION; COMPUTER PROGRAM; EXTRACTION; FOURIER TRANSFORMATION; LIPIDOMICS; MASS SPECTROMETER; PRIORITY JOURNAL; REVIEW; SENSITIVITY AND SPECIFICITY; TANDEM MASS SPECTROMETRY; TIME OF FLIGHT MASS SPECTROMETRY; ANIMAL; ARTICLE; CAENORHABDITIS ELEGANS; CATTLE; CHEMISTRY; HEART MUSCLE; ISOLATION AND PURIFICATION; METHODOLOGY; STATISTICAL ANALYSIS; STATISTICS;

ANIMALS; CAENORHABDITIS ELEGANS; CATTLE; CHOLESTEROL; CHOLESTEROL ESTERS; DATA INTERPRETATION, STATISTICAL; LIPIDS; MYOCARDIUM; TANDEM MASS SPECTROMETRY;

EID: 38449086882     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(07)33010-3     Document Type: Review

References (20)

1. Bligh E.G., and Dyer W.J. A rapid method of total lipid extraction and purification. Can. J. Biochem. Physiol. 37 (1959) 911-917
2. Brugger B., Erben G., Sandhoff R., Wieland F.T., and Lehmann W.D. Quantitative analysis of biological membrane lipids at the low picomole level by nanoelectrospray ionization tandem mass spectrometry. Proc. Natl. Acad. Sci. USA 94 (1997) 2339-2344
3. Chernushevich I., Loboda A., and Thomson B. An introduction to quadrupole time-of-flight mass spectrometry. J. Mass Spectrom. 36 (2001) 849-865
4. Ejsing C.S., Duchoslav E., Sampaio J., Simons K., Bonner R., Thiele C., Ekroos K., and Shevchenko A. Automated identification and quantification of glycerophospholipid molecular species by multiple precursor ion scanning. Anal. Chem. 78 (2006) 6202-6214
5. Ejsing C.S., Moehring T., Bahr U., Duchoslav E., Karas M., Simons K., and Shevchenko A. Collision-induced dissociation pathways of yeast sphingolipids and their molecular profiling in total lipid extracts: A study by quadrupole TOF and linear ion trap-orbitrap mass spectrometry. J. Mass Spectrom. 41 (2006) 372-389
6. Ekroos K., Chernushevich I.V., Simons K., and Shevchenko A. Quantitative profiling of phospholipids by multiple precursor ion scanning on a hybrid quadrupole time-of-flight mass spectrometer. Anal. Chem. 74 (2002) 941-949
7. Ekroos K., Ejsing C.S., Bahr U., Karas M., Simons K., and Shevchenko A. Charting molecular composition of phosphatidylcholines by fatty acid scanning and ion trap MS3 fragmentation. J. Lipid Res. 44 (2003) 2181-2192
8. Ekroos K., and Shevchenko A. Simple two-point calibration of hybrid quadrupole time-of-flight instruments using a synthetic lipid standard. Rapid Commun. Mass Spectrom. 16 (2002) 1254-1255
9. Han X., and Gross R.W. Global analyses of cellular lipidomes directly from crude extracts of biological samples by ESI mass spectrometry: A bridge to lipidomics. J. Lipid Res. 44 (2003) 1071-1079
10. Han X., and Gross R.W. Shotgun lipidomics: Electrospray ionization mass spectrometric analysis and quantitation of cellular lipidomes directly from crude extracts of biological samples. Mass Spectrom. Rev. 24 (2005) 367-412
11. Han X., Yang K., Yang J., Fikes K.N., Cheng H., and Gross R.W. Factors influencing the electrospray intrasource separation and selective ionization of glycerophospholipids. J. Am. Soc. Mass Spectrom. 17 (2006) 264-274
12. Liebisch G., Binder M., Schifferer R., Langmann T., Schulz B., and Schmitz G. High throughput quantification of cholesterol and cholesteryl ester by electrospray ionization tandem mass spectrometry (ESI-MS/MS). Biochim. Biophys. Acta 1761 (2006) 121-128
13. Liebisch G., Lieser B., Rathenberg J., Drobnik W., and Schmitz G. High-throughput quantification of phosphatidylcholine and sphingomyelin by electrospray ionization tandem mass spectrometry coupled with isotope correction algorithm. Biochim. Biophys. Acta 1686 (2004) 108-117
14. Makarov A., Denisov E., Kholomeev A., Balschun W., Lange O., Strupat K., and Horning S. Performance evaluation of a hybrid linear ion trap/orbitrap mass spectrometer. Anal. Chem. 78 (2006) 2113-2120
15. Pulfer M., and Murphy R.C. Electrospray mass spectrometry of phospholipids. Mass Spectrom. Rev. 22 (2003) 332-364
16. Schwudke D., Oegema J., Burton L., Entchev E., Hannich J.T., Ejsing C.S., Kurzchalia T., and Shevchenko A. Lipid profiling by multiple precursor and neutral loss scanning driven by the data-dependent acquisition. Anal. Chem. 78 (2006) 585-595
17. Schwudke D., Hannich J.T., Surendranath V., Grimard V., Moehring T., Burton L., Kurzchalia T., and Shevchenko A. Top-down lipidomic screens by multivariate analysis of high-resolution survey mass spectra. Anal. Chem. 79 (2007) 4083-4093
18. Syka J.E., Marto J.A., Bai D.L., Horning S., Senko M.W., Schwartz J.C., Ueberheide B., Garcia B., Busby S., Muratore T., Shabanowitz J., and Hunt D.F. Novel linear quadrupole ion trap/FT mass spectrometer: Performance characterization and use in the comparative analysis of histone H3 post-translational modifications. J. Proteome Res. 3 (2004) 621-626
19. Wenk M.R. The emerging field of lipidomics. Nat. Rev. Drug Discov. 4 (2005) 594-610
20. Zemski Berry K.A., and Murphy R.C. Electrospray ionization tandem mass spectrometry of glycerophosphoethanolamine plasmalogen phospholipids. J. Am. Soc. Mass Spectrom. 15 (2004) 1499-1508