-
1
-
-
0019192296
-
The nucleotide sequence of a small (3S) seryl-tRNA (anticodon GCU) from beef heart mitochondria
-
doi:10.1093/nar/8.22.5207
-
Arcari, P., and Brownlee, G. G. (1980). The nucleotide sequence of a small (3S) seryl-tRNA (anticodon GCU) from beef heart mitochondria. Nucleic Acids Res. 8, 5207-5212. doi: 10.1093/nar/8.22.5207
-
(1980)
Nucleic Acids Res
, vol.8
, pp. 5207-5212
-
-
Arcari, P.1
Brownlee, G.G.2
-
2
-
-
33750974470
-
An evolutionary 'intermediate state' of mitochondrial translation systems found in Trichinella species of parasitic nematodes: co-evolution of tRNA and EF-Tu
-
doi:10.1093/nar/gkl526
-
Arita, M., Suematsu, T., Osanai, A., Inaba, T., Kamiya, H., Kita, K., et al. (2006). An evolutionary 'intermediate state' of mitochondrial translation systems found in Trichinella species of parasitic nematodes: co-evolution of tRNA and EF-Tu. Nucleic Acids Res. 34, 5291-5929. doi: 10.1093/nar/gkl526
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 5291-5929
-
-
Arita, M.1
Suematsu, T.2
Osanai, A.3
Inaba, T.4
Kamiya, H.5
Kita, K.6
-
3
-
-
0028268618
-
Escherichia coli seryl-tRNA synthetase recognizes tRNASer by its characteristic tertiary structure
-
doi:10.1006/jmbi.1994.1186
-
Asahara, H., Himeno, H., Tamura, K., Nameki, N., Hasegawa, T., and Shimizu, M. (1994). Escherichia coli seryl-tRNA synthetase recognizes tRNASer by its characteristic tertiary structure. J. Mol. Biol. 236, 738-748. doi: 10.1006/jmbi.1994.1186
-
(1994)
J. Mol. Biol.
, vol.236
, pp. 738-748
-
-
Asahara, H.1
Himeno, H.2
Tamura, K.3
Nameki, N.4
Hasegawa, T.5
Shimizu, M.6
-
4
-
-
0019332879
-
The sequence of a possible 5S RNA-equivalent in hamster mitochondria
-
doi:10.1093/nar/8.16.3603
-
Baer, R. J., and Dubin, D. T. (1980). The sequence of a possible 5S RNA-equivalent in hamster mitochondria. Nucleic Acids Res. 8, 603-610. doi: 10.1093/nar/8.16.3603
-
(1980)
Nucleic Acids Res
, vol.8
, pp. 603-610
-
-
Baer, R.J.1
Dubin, D.T.2
-
5
-
-
0028105601
-
The 2.9 Å crystal structure of T. thermophilus seryl-tRNA synthetase complexed with tRNASer
-
doi:10.1126/science.8128220
-
Biou, V., Yaremchuk, A., Tukalo, M., and Cusack, S. (1994). The 2.9 Å crystal structure of T. thermophilus seryl-tRNA synthetase complexed with tRNASer. Science 263, 1404-1410. doi: 10.1126/science.8128220
-
(1994)
Science
, vol.263
, pp. 1404-1410
-
-
Biou, V.1
Yaremchuk, A.2
Tukalo, M.3
Cusack, S.4
-
6
-
-
0032560646
-
Strong selective pressure to use G:U to mark an RNA acceptor stem for alanine
-
doi:10.1021/bi9804636
-
Chihade, J. W., Hayashibara, K., Shiba, K., and Schimmel, P. (1998). Strong selective pressure to use G:U to mark an RNA acceptor stem for alanine. Biochemistry 37, 9193-9202. doi: 10.1021/bi9804636
-
(1998)
Biochemistry
, vol.37
, pp. 9193-9202
-
-
Chihade, J.W.1
Hayashibara, K.2
Shiba, K.3
Schimmel, P.4
-
7
-
-
27144454126
-
Dual-mode recognition of noncanonical tRNAsSer by seryl-tRNA synthetase in mammalian mitochondria
-
doi:10.1038/sj.emboj.7600811
-
Chimnaronk, S., Jeppesen, M. G., Suzuki, T., Nyborg, J., and Watanabe, K. (2005). Dual-mode recognition of noncanonical tRNAsSer by seryl-tRNA synthetase in mammalian mitochondria. EMBO J. 24, 3369-3379. doi: 10.1038/sj.emboj.7600811
-
(2005)
EMBO J
, vol.24
, pp. 3369-3379
-
-
Chimnaronk, S.1
Jeppesen, M.G.2
Suzuki, T.3
Nyborg, J.4
Watanabe, K.5
-
8
-
-
0021092729
-
-
de Bruijn, M. H., and Klug, A. (1983). A model for the tertiary structure of mammalian mitochondrial transfer RNAs lacking the entire 'dihydrouridine' loop and stem. EMBO J. 2, 1309-1321.
-
(1983)
, vol.2
, pp. 1309-1321
-
-
de Bruijn, M.H.1
Klug, A.2
-
9
-
-
0019198062
-
A mammalian mitochondrial serine transfer RNA lacking the "dihydrouridine" loop and stem
-
doi:10.1093/nar/8.22.5213
-
de Bruijn, M. H., Schreier, P. H., Eperon, I. C., Barrell, B. G., Chen, E. Y., Armstrong, P. W., et al. (1980). A mammalian mitochondrial serine transfer RNA lacking the "dihydrouridine" loop and stem. Nucleic Acids Res. 8, 5213-5222. doi: 10.1093/nar/8.22.5213
-
(1980)
Nucleic Acids Res
, vol.8
, pp. 5213-5222
-
-
de Bruijn, M.H.1
Schreier, P.H.2
Eperon, I.C.3
Barrell, B.G.4
Chen, E.Y.5
Armstrong, P.W.6
-
10
-
-
85063438798
-
tRNA nucleotidyltransferase and the -C-C-A terminus of transfer RNA
-
ed. S.T. Jacob (Boca Raton FL: CRC Press
-
Deutscher, M. P. (1983). "tRNA nucleotidyltransferase and the -C-C-A terminus of transfer RNA," in Enzymes of Nucleic Acid Synthesis and Modification, Vol. 2, RNA Enzymes, ed. S.T. Jacob (Boca Raton, FL: CRC Press), 159-183.
-
(1983)
in Enzymes of Nucleic Acid Synthesis and Modification RNA Enzymes
, vol.2
, pp. 159-183
-
-
Deutscher, M.P.1
-
11
-
-
0015506485
-
Comparison of cytoplasmic and mitochondrial 4S RNA from cultured hamster cells: physical and metabolic properties
-
doi:10.1016/0022-2836(72)90344-0
-
Dubin, D. T., and Friend, D. A. (1972). Comparison of cytoplasmic and mitochondrial 4S RNA from cultured hamster cells: physical and metabolic properties. J. Mol. Biol. 71, 163-175. doi: 10.1016/0022-2836(72)90344-0
-
(1972)
J. Mol. Biol.
, vol.71
, pp. 163-175
-
-
Dubin, D.T.1
Friend, D.A.2
-
12
-
-
0015944513
-
-
doi:10.1016/0006-291X(74)90856-0
-
Dubin, D. T., Jones, T. N., and Cleaves, G. R. (1974). An unmethylated "3 SE" RNA in hamster mitochondria: a 5 S RNA-equivalent? Biochem. Biophys. Res. Commun. 56, 401-406. doi: 10.1016/0006-291X(74)90856-0
-
(1974)
Biochem. Biophys. Res. Commun.
, vol.56
, pp. 401-406
-
-
Dubin, D.T.1
Jones, T.N.2
Cleaves, G.R.3
-
13
-
-
0033555690
-
Determination of the angle between the acceptor and anticodon stems of a truncated mitochondrial tRNA
-
doi:10.1006/jmbi.1998.2320
-
Frazer-Abel, A. A., and Hagerman, P. J. (1999). Determination of the angle between the acceptor and anticodon stems of a truncated mitochondrial tRNA. J. Mol. Biol. 285, 581-593. doi: 10.1006/jmbi.1998.2320
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 581-593
-
-
Frazer-Abel, A.A.1
Hagerman, P.J.2
-
14
-
-
4644235825
-
-
doi:10.1016/j.jmb.2004.07.087
-
Frazer-Abel, A. A., and Hagerman, P. J. (2004). Variation of the acceptor-anticodon interstem angles among mitochondrial and non-mitochondrial tRNAs. J. Mol. Biol. 343, 313-325. doi: 10.1016/j.jmb.2004.07.087
-
(2004)
, vol.343
, pp. 313-325
-
-
Frazer-Abel, A.A.1
Hagerman, P.J.2
-
15
-
-
55249094125
-
Core flexibility of a truncated metazoan mitochondrial tRNA
-
doi:10.1093/nar/gkn529
-
Frazer-Abel, A. A., and Hagerman, P. J. (2008). Core flexibility of a truncated metazoan mitochondrial tRNA. Nucleic Acids Res. 36, 5472-5481. doi: 10.1093/nar/gkn529
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 5472-5481
-
-
Frazer-Abel, A.A.1
Hagerman, P.J.2
-
16
-
-
3643114575
-
-
doi:10.1093/nar/26.22.5017
-
Giegé, R., Sissler, M., and Florentz, C. (1998). Universal rules and idiosyncratic features in tRNA identity. Nucleic Acids Res. 26, 5017-5035. doi: 10.1093/nar/26.22.5017
-
(1998)
, vol.26
, pp. 5017-5035
-
-
Giegé, R.1
Sissler, M.2
Florentz, C.3
-
17
-
-
84892797558
-
Architecture of the large subunit of the mammalian mitochondrial ribosome
-
doi:10.1038/nature12890
-
Greber, B. J., Boehringer, D., Leitner, A., Bieri, P., Voigts-Hoffmann, F., Erzberger, J. P., et al. (2014) Architecture of the large subunit of the mammalian mitochondrial ribosome. Nature 505, 515-519. doi: 10.1038/nature12890
-
(2014)
Nature
, vol.505
, pp. 515-519
-
-
Greber, B.J.1
Boehringer, D.2
Leitner, A.3
Bieri, P.4
Voigts-Hoffmann, F.5
Erzberger, J.P.6
-
18
-
-
0035214510
-
Translation ability of mitochondrial tRNAsSer with unusual secondary structures in an in vitro translation system of bovine mitochondria
-
doi:10.1046/j.1365-2443.2001.00491.x
-
Hanada, T., Suzuki, T., Yokogawa, T., Takemoto-Hori, C., Sprinzl, M., and Watanabe, K. (2001). Translation ability of mitochondrial tRNAsSer with unusual secondary structures in an in vitro translation system of bovine mitochondria. Genes Cells 6, 1019-1030. doi: 10.1046/j.1365-2443.2001.00491.x
-
(2001)
Genes Cells 6, 1019-1030
-
-
Hanada, T.1
Suzuki, T.2
Yokogawa, T.3
Takemoto-Hori, C.4
Sprinzl, M.5
Watanabe, K.6
-
19
-
-
0030759652
-
Assignment of imino proton signals of G-C base pairs and magnesium ion binding: an NMR study of bovine mitochondrial tRNASer(GCU) lacking the entire D arm
-
doi:10.1093/oxfordjournals.jbchem.a021703
-
Hayashi, I., Yokogawa, T., Kawai, G., Ueda, T., Nishikawa, K., and Watanabe, K. (1997). Assignment of imino proton signals of G-C base pairs and magnesium ion binding: an NMR study of bovine mitochondrial tRNASer(GCU) lacking the entire D arm. J. Biochem. 121, 1115-1122. doi: 10.1093/oxfordjournals.jbchem.a021703
-
(1997)
J. Biochem.
, vol.121
, pp. 1115-1122
-
-
Hayashi, I.1
Yokogawa, T.2
Kawai, G.3
Ueda, T.4
Nishikawa, K.5
Watanabe, K.6
-
20
-
-
58149191272
-
compilation of tRNA sequences and tRNA genes
-
doi:10.1093/nar/gkn772
-
Jühling, F., Mörl, M., Hartmann, R. K., Sprinzl, M., Stadler, P. F., and Pütz, J. (2009). tRNAdb 2009: compilation of tRNA sequences and tRNA genes. Nucleic Acids Res. 37, D159-D162. doi: 10.1093/nar/gkn772
-
(2009)
Nucleic Acids Res
, vol.2009
-
-
Jühling, F.1
Mörl, M.2
Hartmann, R.K.3
Sprinzl, M.4
Stadler, P.F.5
Pütz, J.6
-
21
-
-
84858292395
-
-
doi:10.1093/nar/gkr1131
-
Jühling, F., Pütz, J., Bernt, M., Donath, A., Middendorf, M., Florentz, C., et al. (2012a). Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements. Nucleic Acids Res. 40, 2833-2845. doi: 10.1093/nar/gkr1131
-
(2012)
, vol.40
, pp. 2833-2845
-
-
Jühling, F.1
Pütz, J.2
Bernt, M.3
Donath, A.4
Middendorf, M.5
Florentz, C.6
-
22
-
-
84868111898
-
-
doi:10.4161/rna.21630
-
Jühling, F., Pütz, J., Florentz, C., and Stadler, P. F. (2012b). Armless mitochondrial tRNAs in Enoplea (Nematoda). RNA Biol. 9, 1161-1166. doi: 10.4161/rna.21630
-
(2012)
, vol.9
, pp. 1161-1166
-
-
Jühling, F.1
Pütz, J.2
Florentz, C.3
Stadler, P.F.4
-
23
-
-
71549154664
-
-
doi:10.1016/j.febslet.2009.11.034
-
Khade, P., and Joseph, S. (2010). Functional interactions by transfer RNAs in the ribosome. FEBS Lett. 584, 420-426. doi: 10.1016/j.febslet.2009.11.034
-
(2010)
, vol.584
, pp. 420-426
-
-
Khade, P.1
Joseph, S.2
-
24
-
-
0034693152
-
A proteomics approach to the identification of mammalian mitochondrial small subunit ribosomal proteins
-
doi:10.1074/jbc.M003596200
-
Koc, E. C., Burkhart, W., Blackburn, K., Moseley, A., Koc, H., and Spremulli, L. L. (2000). A proteomics approach to the identification of mammalian mitochondrial small subunit ribosomal proteins. J. Biol. Chem. 275, 32585-33291. doi: 10.1074/jbc.M003596200
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 32585-33291
-
-
Koc, E.C.1
Burkhart, W.2
Blackburn, K.3
Moseley, A.4
Koc, H.5
Spremulli, L.L.6
-
25
-
-
33748582906
-
Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements
-
doi:10.1016/j.cell.2006.08.032
-
Korostelev, A., Trakhanov, S., Laurberg, M., and Noller, H. F. (2006). Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements. Cell 126, 1065-1077. doi: 10.1016/j.cell.2006.08.032
-
(2006)
Cell
, vol.126
, pp. 1065-1077
-
-
Korostelev, A.1
Trakhanov, S.2
Laurberg, M.3
Noller, H.F.4
-
26
-
-
0026021530
-
Unilateral aminoacylation specificity between bovine mitochondria and eubacteria
-
Kumazawa, Y., Himeno, H., Miura, K., and Watanabe, K. (1991). Unilateral aminoacylation specificity between bovine mitochondria and eubacteria. J. Biochem. 109, 421-427.
-
(1991)
J. Biochem.
, vol.109
, pp. 421-427
-
-
Kumazawa, Y.1
Himeno, H.2
Miura, K.3
Watanabe, K.4
-
27
-
-
0035109373
-
Trichinella spiralis mtDNA: a nematode mitochondrial genome that encodes a putative ATP8 and normally structured tRNAs and has a gene arrangement relatable to those of coelomate metazoans
-
Lavrov, D. V., and Brown, W. M. (2001). Trichinella spiralis mtDNA: a nematode mitochondrial genome that encodes a putative ATP8 and normally structured tRNAs and has a gene arrangement relatable to those of coelomate metazoans. Genetics 157, 621-637.
-
(2001)
Genetics
, vol.157
, pp. 621-637
-
-
Lavrov, D.V.1
Brown, W.M.2
-
28
-
-
0035801705
-
Translocation within the acceptor helix of a major tRNA identity determinant
-
doi:10.1093/emboj/20.17.4846
-
Lovato, M. A., Chihade, J. W., and Schimmel, P. (2001). Translocation within the acceptor helix of a major tRNA identity determinant. EMBO J. 20, 4846-4853. doi: 10.1093/emboj/20.17.4846
-
(2001)
EMBO J
, vol.20
, pp. 4846-4853
-
-
Lovato, M.A.1
Chihade, J.W.2
Schimmel, P.3
-
29
-
-
0033945896
-
Mitochondrial sequence evolution in spiders: intraspecific variation in tRNAs lacking the TΨC arm
-
doi:10.1093/oxfordjournals.molbev.a026390
-
Masta, S. E. (2000). Mitochondrial sequence evolution in spiders: intraspecific variation in tRNAs lacking the TΨC arm. Mol. Biol. Evol. 17, 1091-1100. doi: 10.1093/oxfordjournals.molbev.a026390
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1091-1100
-
-
Masta, S.E.1
-
30
-
-
0036382768
-
Modeling a minimal ribosome based on comparative sequence analysis
-
doi:10.1016/S0022-2836(02)00568-5
-
Mears, J. A., Cannone, J. J., Stagg, S. M., Gutell, R. R., Agrawal, R. K., and Harvey, S. C. (2002). Modeling a minimal ribosome based on comparative sequence analysis. J. Mol. Biol. 321, 215-234. doi: 10.1016/S0022-2836(02)00568-5
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 215-234
-
-
Mears, J.A.1
Cannone, J.J.2
Stagg, S.M.3
Gutell, R.R.4
Agrawal, R.K.5
Harvey, S.C.6
-
31
-
-
0028812785
-
Crystal structure of the ternary complex of Phe-tRNAPhe, EF-Tu, and a GTP analog
-
doi:10.1126/science.270.5241.1464
-
Nissen, P., Kjeldgaard, M., Thirup, S., Polekhina, G., Reshetnikova, L., Clark, B. F., et al. (1995). Crystal structure of the ternary complex of Phe-tRNAPhe, EF-Tu, and a GTP analog. Science 270, 1464-1472. doi: 10.1126/science.270.5241.1464
-
(1995)
Science
, vol.270
, pp. 1464-1472
-
-
Nissen, P.1
Kjeldgaard, M.2
Thirup, S.3
Polekhina, G.4
Reshetnikova, L.5
Clark, B.F.6
-
32
-
-
0028266202
-
Molecular recognition of the identity-determinant set of isoleucine transfer RNA from Escherichia coli
-
doi:10.1006/jmbi.1994.1184
-
Nureki, O., Niimi, T., Muramatsu, T., Kanno, H., Kohno, T., Florentz, C., et al. (1994). Molecular recognition of the identity-determinant set of isoleucine transfer RNA from Escherichia coli. J. Mol. Biol. 236, 710-724. doi: 10.1006/jmbi.1994.1184
-
(1994)
J. Mol. Biol.
, vol.236
, pp. 710-724
-
-
Nureki, O.1
Niimi, T.2
Muramatsu, T.3
Kanno, H.4
Kohno, T.5
Florentz, C.6
-
33
-
-
0031822040
-
Stable isotope-edited NMR analysis of Ascaris suum mitochondrial tRNAMet having a TV-replacement loop
-
doi:10.1093/oxfordjournals.jbchem.a022092
-
Ohtsuki, T., Kawai, G., and Watanabe, K. (1998). Stable isotope-edited NMR analysis of Ascaris suum mitochondrial tRNAMet having a TV-replacement loop. J. Biochem. 124, 28-34. doi: 10.1093/oxfordjournals.jbchem.a022092
-
(1998)
J. Biochem.
, vol.124
, pp. 28-34
-
-
Ohtsuki, T.1
Kawai, G.2
Watanabe, K.3
-
34
-
-
0029991352
-
Preparation of biologically active Ascaris suum mitochondrial tRNAMet with a TV-replacement loop by ligation of chemically synthesized RNA fragments
-
doi:10.1093/nar/24.4.662
-
Ohtsuki, T., Kawai, G., Watanabe, Y., Kita, K., Nishikawa, K., and Watanabe, K. (1996). Preparation of biologically active Ascaris suum mitochondrial tRNAMet with a TV-replacement loop by ligation of chemically synthesized RNA fragments. Nucleic Acids Res. 24, 662-667. doi: 10.1093/nar/24.4.662
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 662-667
-
-
Ohtsuki, T.1
Kawai, G.2
Watanabe, Y.3
Kita, K.4
Nishikawa, K.5
Watanabe, K.6
-
35
-
-
0037029027
-
The minimal tRNA: unique structure of Ascaris suum mitochondrial tRNASer(UCU) having a short T arm and lacking the entire D arm
-
doi:10.1016/S0014-5793(02)02328-1
-
Ohtsuki, T., Kawai, G., and Watanabe, K. (2002a). The minimal tRNA: unique structure of Ascaris suum mitochondrial tRNASer(UCU) having a short T arm and lacking the entire D arm. FEBS Lett. 514, 37-43. doi: 10.1016/S0014-5793(02)02328-1
-
(2002)
FEBS Lett
, vol.514
, pp. 37-43
-
-
Ohtsuki, T.1
Kawai, G.2
Watanabe, K.3
-
36
-
-
0036725278
-
A unique serine-specific elongation factor Tu found in nematode mitochondria
-
doi:10.1038/nsb826
-
Ohtsuki, T., Sato, A., Watanabe, Y., and Watanabe, K. (2002b). A unique serine-specific elongation factor Tu found in nematode mitochondria. Nat. Struct. Biol. 9, 669-673. doi: 10.1038/nsb826
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 669-673
-
-
Ohtsuki, T.1
Sato, A.2
Watanabe, Y.3
Watanabe, K.4
-
37
-
-
34047221623
-
-
doi:10.1080/15216540701218722
-
Ohtsuki, T., and Watanabe, Y. (2007). T-armless tRNAs and elongated elongation factor Tu. IUBMB Life 59, 68-75. doi: 10.1080/15216540701218722
-
(2007)
IUBMB Life
, vol.59
, pp. 68-75
-
-
Ohtsuki, T.1
Watanabe, Y.2
-
38
-
-
0035877834
-
An "elongated" translation elongation factor Tu for truncated tRNAs in nematode mitochondria
-
doi:10.1074/jbc.M011118200
-
Ohtsuki, T., Watanabe, Y., Takemoto, C., Kawai, G., Ueda, T., Kita, K., et al. (2001). An "elongated" translation elongation factor Tu for truncated tRNAs in nematode mitochondria. J. Biol. Chem. 276, 21571-21577. doi: 10.1074/jbc.M011118200
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 21571-21577
-
-
Ohtsuki, T.1
Watanabe, Y.2
Takemoto, C.3
Kawai, G.4
Ueda, T.5
Kita, K.6
-
39
-
-
0026573893
-
-
Okimoto, R., Macfarlane, J. L., Clary, D. O., and Wolstenholme, D. R. (1992). The mitochondrial genomes of two nematodes, Caenorhabditis elegans and Ascaris suum. Genetics 130, 471-498.
-
(1992)
, vol.130
, pp. 471-498
-
-
Okimoto, R.1
Macfarlane, J.L.2
Clary, D.O.3
Wolstenholme, D.R.4
-
40
-
-
48249128388
-
Mammalian mitochondria have the innate ability to import tRNAs by a mechanism distinct from protein import
-
doi:10.1073/pnas.0804283105
-
Rubio, M. A., Rinehart, J. J., Krett, B., Duvezin-Caubet, S., Reichert, A. S., Söll, D., et al. (2008). Mammalian mitochondria have the innate ability to import tRNAs by a mechanism distinct from protein import. Proc. Natl. Acad. Sci. U.S.A. 105, 9186-9191. doi: 10.1073/pnas.0804283105
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 9186-9191
-
-
Rubio, M.A.1
Rinehart, J.J.2
Krett, B.3
Duvezin-Caubet, S.4
Reichert, A.S.5
Söll, D.6
-
41
-
-
0028241947
-
Minimalist aminoacylated RNAs as efficient substrates for elongation factor Tu
-
doi:10.1021/bi00185a003
-
Rudinger, J., Blechschmidt, B., Ribeiro, S., and Sprinzl, M. (1994). Minimalist aminoacylated RNAs as efficient substrates for elongation factor Tu. Biochemistry 33, 5682-5688. doi: 10.1021/bi00185a003
-
(1994)
Biochemistry
, vol.33
, pp. 5682-5688
-
-
Rudinger, J.1
Blechschmidt, B.2
Ribeiro, S.3
Sprinzl, M.4
-
42
-
-
19444386899
-
Unusual usage of wobble modifications in mitochondrial tRNAs of the nematode Ascaris suum
-
doi:10.1016/j.febslet.2005.04.009
-
Sakurai, M., Ohtsuki, T., Suzuki, T., and Watanabe, K. (2005a). Unusual usage of wobble modifications in mitochondrial tRNAs of the nematode Ascaris suum. FEBS Lett. 579, 2767-2772. doi: 10.1016/j.febslet.2005.04.009
-
(2005)
FEBS Lett
, vol.579
, pp. 2767-2772
-
-
Sakurai, M.1
Ohtsuki, T.2
Suzuki, T.3
Watanabe, K.4
-
43
-
-
15044362242
-
-
doi:10.1093/nar/gki309
-
Sakurai, M., Ohtsuki, T., and Watanabe, K. (2005b). Modification at position 9 with 1-methyladenosine is crucial for structure and function of nematode mitochondrial tRNAs lacking the entire T-arm. Nucleic Acids Res. 33, 1653-1661. doi: 10.1093/nar/gki309
-
(2005)
, vol.33
, pp. 1653-1661
-
-
Sakurai, M.1
Ohtsuki, T.2
Watanabe, K.3
-
44
-
-
33749983710
-
A protein extension to shorten RNA: elongated elongation factor-Tu recognizes the D-arm of T-armless tRNAs in nematode mitochondria
-
doi:10.1042/BJ20060781
-
Sakurai, M., Watanabe, Y., Watanabe, K., and Ohtsuki, T. (2006). A protein extension to shorten RNA: elongated elongation factor-Tu recognizes the D-arm of T-armless tRNAs in nematode mitochondria. Biochem. J. 399, 249-256. doi: 10.1042/BJ20060781
-
(2006)
Biochem. J.
, vol.399
, pp. 249-256
-
-
Sakurai, M.1
Watanabe, Y.2
Watanabe, K.3
Ohtsuki, T.4
-
45
-
-
33748493391
-
Identification of the residues involved in the unique serine specificity of Caenorhabditis elegans mitochondrial EF-Tu2
-
doi:10.1021/bi060536i
-
Sato, A., Watanabe, Y., Suzuki, T., Komiyama, M., Watanabe, K., and Ohtsuki, T. (2006). Identification of the residues involved in the unique serine specificity of Caenorhabditis elegans mitochondrial EF-Tu2. Biochemistry 45, 10920-10927. doi: 10.1021/bi060536i
-
(2006)
Biochemistry
, vol.45
, pp. 10920-10927
-
-
Sato, A.1
Watanabe, Y.2
Suzuki, T.3
Komiyama, M.4
Watanabe, K.5
Ohtsuki, T.6
-
46
-
-
33749354360
-
Structure of the 70S ribosome complexed with mRNA and tRNA
-
doi:10.1126/science.1131127
-
Selmer, M., Dunham, C. M., Murphy, F. V. IV, Weixlbaumer, A., Petry, S., Kelley, A. C., et al. (2006). Structure of the 70S ribosome complexed with mRNA and tRNA. Science 313, 1935-1942. doi: 10.1126/science.1131127
-
(2006)
Science
, vol.313
, pp. 1935-1942
-
-
Selmer, M.1
Dunham, C.M.2
Murphy, F.V.3
Weixlbaumer, I.V.4
Petry, A.5
Kelley, A.C.6
-
47
-
-
0141953259
-
Structure of the mammalian mitochondrial ribosome reveals an expanded functional role for its component proteins
-
doi:10.1016/S0092-8674(03)00762-1
-
Sharma, M. R., Koc, E. C., Datta, P. P., Booth, T. M., Spremulli, L. L., and Agrawal, R. K. (2003). Structure of the mammalian mitochondrial ribosome reveals an expanded functional role for its component proteins. Cell 115, 97-108. doi: 10.1016/S0092-8674(03)00762-1
-
(2003)
Cell
, vol.115
, pp. 97-108
-
-
Sharma, M.R.1
Koc, E.C.2
Datta, P.P.3
Booth, T.M.4
Spremulli, L.L.5
Agrawal, R.K.6
-
48
-
-
0035861685
-
Dual mode recognition of two isoacceptor tRNAs by mammalian mitochondrial seryl-tRNA synthetase
-
doi:10.1074/jbc.M105150200
-
Shimada, N., Suzuki, T., and Watanabe, K. (2001). Dual mode recognition of two isoacceptor tRNAs by mammalian mitochondrial seryl-tRNA synthetase. J. Biol. Chem. 276, 46770-46778. doi: 10.1074/jbc.M105150200
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 46770-46778
-
-
Shimada, N.1
Suzuki, T.2
Watanabe, K.3
-
49
-
-
0028348061
-
-
Seutin, G., Lang, B. F., Mindell, D. P., and Morais, R. (1994). Evolution of the WANCY region in amniote mitochondrial DNA. Mol. Biol. Evol. 11, 329-340.
-
(1994)
, vol.11
, pp. 329-340
-
-
Seutin, G.1
Lang, B.F.2
Mindell, D.P.3
Morais, R.4
-
50
-
-
0028226511
-
Fitting the structurally diverse animal mitochondrial tRNAsSer to common three-dimensional constraints
-
doi:10.1016/0022-2836(94)90004-3
-
Steinberg, S., Gautheret, D., and Cedergren, R. (1994). Fitting the structurally diverse animal mitochondrial tRNAsSer to common three-dimensional constraints. J. Mol. Biol. 236, 982-989. doi: 10.1016/0022-2836(94)90004-3
-
(1994)
J. Mol. Biol.
, vol.236
, pp. 982-989
-
-
Steinberg, S.1
Gautheret, D.2
Cedergren, R.3
-
51
-
-
24044535123
-
-
doi:10.1093/nar/gki784
-
Suematsu, T., Sato, A., Sakurai, M., Watanabe, K., and Ohtsuki, T. (2005). A unique tRNA recognition mechanism of Caenorhabditis elegans mitochondrial EF-Tu2. Nucleic Acids Res. 33, 4683-4691. doi: 10.1093/nar/gki784
-
(2005)
, vol.33
, pp. 4683-4691
-
-
Suematsu, T.1
Sato, A.2
Sakurai, M.3
Watanabe, K.4
Ohtsuki, T.5
-
52
-
-
0035980117
-
Proteomic analysis of the mammalian mitochondrial ribosome. Identification of protein components in the 28 S small subunit
-
doi:10.1074/jbc.M103236200
-
Suzuki, T., Terasaki, M., Takemoto-Hori, C., Hanada, T., Ueda, T., Wada, A., et al. (2001). Proteomic analysis of the mammalian mitochondrial ribosome. Identification of protein components in the 28 S small subunit. J. Biol. Chem. 276, 33181-33195. doi: 10.1074/jbc.M103236200
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 33181-33195
-
-
Suzuki, T.1
Terasaki, M.2
Takemoto-Hori, C.3
Hanada, T.4
Ueda, T.5
Wada, A.6
-
53
-
-
0041818183
-
tRNA recognition by CCA-adding enzyme
-
doi: 10.1093/nass/2.1.77
-
Tomari, Y., Suzuki, T., and Ueda, T. (2002). tRNA recognition by CCA-adding enzyme. Nucleic Acids Res. Suppl. 2002, 77-78. doi: 10.1093/nass/2.1.77
-
(2002)
Nucleic Acids Res. Suppl.
, vol.2002
, pp. 77-78
-
-
Tomari, Y.1
Suzuki, T.2
Ueda, T.3
-
54
-
-
3943067796
-
-
doi:10.1038/nature02712
-
Tomita, K., Fukai, S., Ishitani, R., Ueda, T., Takeuchi, N., Vassylyev, D. G., et al. (2004). Structural basis for template-independent RNA polymerization. Nature 430, 700-704. doi: 10.1038/nature02712
-
(2004)
, vol.430
, pp. 700-704
-
-
Tomita, K.1
Fukai, S.2
Ishitani, R.3
Ueda, T.4
Takeuchi, N.5
Vassylyev, D.G.6
-
55
-
-
0022351457
-
Large scale isolation and some properties of AGY-specific serine tRNA from bovine heart mitochondria
-
Ueda, T., Ohta, T., and Watanabe, K. (1985). Large scale isolation and some properties of AGY-specific serine tRNA from bovine heart mitochondria. J. Biochem. 98, 1275-1284.
-
(1985)
J. Biochem.
, vol.98
, pp. 1275-1284
-
-
Ueda, T.1
Ohta, T.2
Watanabe, K.3
-
56
-
-
0026516522
-
The T-loop region of animal mitochondrial tRNASer(AGY) is a main recognition site for homologous seryl-tRNA synthetase
-
doi:10.1093/nar/20.9.2217
-
Ueda, T., Yotsumoto, Y., Ikeda, K., and Watanabe, K. (1992). The T-loop region of animal mitochondrial tRNASer(AGY) is a main recognition site for homologous seryl-tRNA synthetase. Nucleic Acids Res. 20, 2217-2222. doi: 10.1093/nar/20.9.2217
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 2217-2222
-
-
Ueda, T.1
Yotsumoto, Y.2
Ikeda, K.3
Watanabe, K.4
-
57
-
-
66149157000
-
-
doi:10.1038/nsmb.1577
-
Voorhees, R. M., Weixlbaumer, A., Loakes, D., Kelley, A. C., and Ramakrishnan, V. (2009). Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome. Nat. Struct. Mol. Biol. 16, 528-533. doi: 10.1038/nsmb.1577
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 528-533
-
-
Voorhees, R.M.1
Weixlbaumer, A.2
Loakes, D.3
Kelley, A.C.4
Ramakrishnan, V.5
-
58
-
-
0028144722
-
Primary and higher order structures of nematode (Ascaris suum) mitochondrial tRNAs lacking either the T or D stem
-
Watanabe, Y., Tsurui, H., Ueda, T., Furushima, R., Takamiya, S., Kita, K., et al. (1994). Primary and higher order structures of nematode (Ascaris suum) mitochondrial tRNAs lacking either the T or D stem. J. Biol. Chem. 269, 22902-22906.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 22902-22906
-
-
Watanabe, Y.1
Tsurui, H.2
Ueda, T.3
Furushima, R.4
Takamiya, S.5
Kita, K.6
-
59
-
-
0031042043
-
Primary sequence of mitochondrial tRNAArg of a nematode Ascaris suum: occurrence of unmodified adenosine at the first position of the anticodon
-
doi:10.1016/S0167-4781(96)00211-4
-
Watanabe, Y., Tsurui, H., Ueda, T., Furushima-Shimogawara, R., Takamiya, S., Kita, K., et al. (1997). Primary sequence of mitochondrial tRNAArg of a nematode Ascaris suum: occurrence of unmodified adenosine at the first position of the anticodon. Biochim. Biophys. Acta 1350, 119-122. doi: 10.1016/S0167-4781(96)00211-4
-
(1997)
Biochim. Biophys. Acta
, vol.1350
, pp. 119-122
-
-
Watanabe, Y.1
Tsurui, H.2
Ueda, T.3
Furushima-Shimogawara, R.4
Takamiya, S.5
Kita, K.6
-
60
-
-
84897098160
-
Biological evidence for the world's smallest tRNAs
-
doi:10.1016/j.biochi.2013.07.034
-
Wende, S., Platzer, E. G., Jühling, F., Pütz, J., Florentz, C., Stadler, P. F., et al. (2014). Biological evidence for the world's smallest tRNAs. Biochimie 100, 151-158. doi: 10.1016/j.biochi.2013.07.034
-
(2014)
Biochimie
, vol.100
, pp. 151-158
-
-
Wende, S.1
Platzer, E.G.2
Jühling, F.3
Pütz, J.4
Florentz, C.5
Stadler, P.F.6
-
61
-
-
0042570735
-
Bizarre tRNAs inferred from DNA sequences of mitochondrial genomes of nematode worms
-
doi:10.1073/pnas.84.5.1324
-
Wolstenholme, D. R., Macfarlane, J. L., Okimoto, R., Clary, D. O., and Wahleithner, J. A. (1987). Bizarre tRNAs inferred from DNA sequences of mitochondrial genomes of nematode worms. Proc. Natl. Acad. Sci. U.S.A. 84, 1324-1328. doi: 10.1073/pnas.84.5.1324
-
(1987)
Proc. Natl. Acad. Sci. U. S. A.
, vol.84
, pp. 1324-1328
-
-
Wolstenholme, D.R.1
Macfarlane, J.L.2
Okimoto, R.3
Clary, D.O.4
Wahleithner, J.A.5
-
62
-
-
0028109746
-
Nucleotide correlations that suggest tertiary interactions in the TV-replacement loop-containing mitochondrial tRNAs of the nematodes, Caenorhabditis elegans and Ascaris suum
-
doi:10.1093/nar/22.20.4300
-
Wolstenholme, D. R., Okimoto, R., and Macfarlane, J. L. (1994). Nucleotide correlations that suggest tertiary interactions in the TV-replacement loop-containing mitochondrial tRNAs of the nematodes, Caenorhabditis elegans and Ascaris suum. Nucleic Acids Res. 22, 4300-4306. doi: 10.1093/nar/22.20.4300
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4300-4306
-
-
Wolstenholme, D.R.1
Okimoto, R.2
Macfarlane, J.L.3
-
63
-
-
0024517568
-
Purification and characterization of two serine isoacceptor tRNAs from bovine mitochondria by using a hybridization assay method
-
doi:10.1093/nar/17.7.2623
-
Yokogawa, T., Kumazawa, Y., Miura, K., and Watanabe, K. (1989). Purification and characterization of two serine isoacceptor tRNAs from bovine mitochondria by using a hybridization assay method. Nucleic Acids Res. 17, 2623-2638. doi: 10.1093/nar/17.7.2623
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 2623-2638
-
-
Yokogawa, T.1
Kumazawa, Y.2
Miura, K.3
Watanabe, K.4
-
64
-
-
0034733508
-
Characterization and tRNA recognition of mammalian mitochondrial seryl-tRNA synthetase
-
doi:10.1074/jbc.M908473199
-
Yokogawa, T., Shimada, N., Takeuchi, N., Benkowski, L., Suzuki, T., Omori, A., et al. (2000). Characterization and tRNA recognition of mammalian mitochondrial seryl-tRNA synthetase. J. Biol. Chem. 275, 19913-19920. doi: 10.1074/jbc.M908473199
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 19913-19920
-
-
Yokogawa, T.1
Shimada, N.2
Takeuchi, N.3
Benkowski, L.4
Suzuki, T.5
Omori, A.6
|