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Volumn 9, Issue 9, 2012, Pages 1161-1166

Armless mitochondrial tRNAs in enoplea (nematoda)

Author keywords

D loop; Enoplea; Mermithidae; Mitochondrial tRNA; T loop

Indexed keywords


EID: 84868111898     PISSN: 15476286     EISSN: 15558584     Source Type: Journal    
DOI: 10.4161/rna.21630     Document Type: Article
Times cited : (51)

References (37)
  • 1
    • 0033561361 scopus 로고    scopus 로고
    • Animal mitochondrial genomes
    • DOI 10.1093/nar/27.8.1767
    • Boore JL. Animal mitochondrial genomes. Nucleic Acids Res 1999; 27:1767-80; PMID:10101183; http://dx.doi.org/10.1093/nar/27.8.1767. (Pubitemid 29209617)
    • (1999) Nucleic Acids Research , vol.27 , Issue.8 , pp. 1767-1780
    • Boore, J.L.1
  • 2
    • 0019192296 scopus 로고
    • The nucleotide sequence of a small (3S) seryl-tRNA (anticodon GCU) from beef heart mitochondria
    • Arcari P, Brownlee GG. The nucleotide sequence of a small (3S) seryl-tRNA (anticodon GCU) from beef heart mitochondria. Nucleic Acids Res 1980; 8:5207-12; PMID:6906661; http://dx.doi.org/10.1093/nar/8.22.5207. (Pubitemid 11221382)
    • (1980) Nucleic Acids Research , vol.8 , Issue.22 , pp. 5207-5212
    • Arcari, P.1    Brownlee, G.G.2
  • 3
    • 0019198062 scopus 로고
    • A mammalian mitochondrial serine transfer RNA lacking the 'dihydrouridine' loop and stem
    • de Bruijn MH, Schreier PH, Eperon IC, Barrell BG, Chen EY, Armstrong PW, et al. A mammalian mitochondrial serine transfer RNA lacking the "dihydrouridine" loop and stem. Nucleic Acids Res 1980; 8:5213-22; PMID:6906662; http://dx.doi.org/10.1093/nar/8.22.5213. (Pubitemid 11221383)
    • (1980) Nucleic Acids Research , vol.8 , Issue.22 , pp. 5213-5222
    • De Bruijn, M.H.L.1    Schreier, P.H.2    Eperon, I.C.3
  • 4
    • 0033735040 scopus 로고    scopus 로고
    • Search for characteristic structural features of mammalian mitochondrial tRNAs
    • PMID:11073213
    • Helm M, Brulé H, Friede D, Giegé R, Pütz D, Florentz C. Search for characteristic structural features of mammalian mitochondrial tRNAs. RNA 2000; 6:1356-79; PMID:11073213; http://dx.doi.org/10.1017/ S1355838200001047.
    • (2000) RNA , vol.6 , pp. 1356-1379
    • Helm, M.1    Brulé, H.2    Friede, D.3    Giegé, R.4    Pütz, D.5    Florentz, C.6
  • 6
    • 0036156248 scopus 로고    scopus 로고
    • The mitochondrial genomes of the human hookworms, Ancylostoma duodenale and Necator americanus (Nematoda: Secernentea)
    • DOI 10.1016/S0020-7519(01)00316-2, PII S0020751901003162
    • Hu M, Chilton NB, Gasser RB. The mitochon-drial genomes of the human hookworms, Ancylostoma duodenale and Necator americanus (Nematoda: Secernentea). Int J Parasitol 2002; 32:145-58; PMID:11812491; http://dx.doi.org/10.1016/ S0020-7519(01)00316-2. (Pubitemid 34112620)
    • (2002) International Journal for Parasitology , vol.32 , Issue.2 , pp. 145-158
    • Hu, M.1    Chilton, N.B.2    Gasser, R.B.3
  • 7
    • 0032169062 scopus 로고    scopus 로고
    • The mitochondrial genome of Onchocerca volvulus: Sequence, structure and phylogenetic analysis
    • DOI 10.1016/S0166-6851(98)00102-9, PII S0166685198001029
    • Keddie EM, Higazi T, Unnasch TR. The mito-chondrial genome of Onchocerca volvulus: sequence, structure and phylogenetic analysis. Mol Biochem Parasitol 1998; 95:111-27; PMID:9763293; http://dx.doi.org/10.1016/S0166-6851(98)00102-9. (Pubitemid 28404742)
    • (1998) Molecular and Biochemical Parasitology , vol.95 , Issue.1 , pp. 111-127
    • Keddie, E.M.1    Higazi, T.2    Unnasch, T.R.3
  • 8
    • 33748113450 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the entomopatho-genic nematode Steinernema carpocapsae: Insights into nematode mitochondrial DNA evolution and phylog-eny
    • PMID:16474981
    • Montiel R, Lucena MA, Medeiros J, Simões N. The complete mitochondrial genome of the entomopatho-genic nematode Steinernema carpocapsae: insights into nematode mitochondrial DNA evolution and phylog-eny. J Mol Evol 2006; 62:211-25; PMID:16474981; http://dx.doi.org/10.1007/s00239-005-0072-9.
    • (2006) J Mol Evol , vol.62 , pp. 211-225
    • Montiel, R.1    Lucena, M.A.2    Medeiros, J.3    Simões, N.4
  • 9
    • 0025045479 scopus 로고
    • A set of tRNAs that lack either the T psi C arm or the dihydrouridine arm: Towards a minimal tRNA adaptor
    • PMID:2209550
    • Okimoto R, Wolstenholme DR. A set of tRNAs that lack either the T psi C arm or the dihydrouridine arm: towards a minimal tRNA adaptor. EMBO J 1990; 9:3405-11; PMID:2209550.
    • (1990) EMBO J , vol.9 , pp. 3405-3411
    • Okimoto, R.1    Wolstenholme, D.R.2
  • 10
    • 24044535123 scopus 로고    scopus 로고
    • A unique tRNA recognition mechanism of Caenorhabditis elegans mitochondrial EF-Tu2
    • DOI 10.1093/nar/gki784
    • Suematsu T, Sato A, Sakurai M, Watanabe K, Ohtsuki T. A unique tRNA recognition mechanism of Caenorhabditis elegans mitochondrial EF-Tu2. Nucleic Acids Res 2005; 33:4683-91; PMID:16113240; http://dx.doi.org/10.1093/nar/gki784. (Pubitemid 41418870)
    • (2005) Nucleic Acids Research , vol.33 , Issue.15 , pp. 4683-4691
    • Suematsu, T.1    Sato, A.2    Sakurai, M.3    Watanabe, K.4    Ohtsuki, T.5
  • 11
    • 34047221623 scopus 로고    scopus 로고
    • T-armless tRNAs and elongated elongation factor Tu
    • DOI 10.1080/15216540701218722, PII 776199930
    • Ohtsuki T, Watanabe Y. T-armless tRNAs and elongated elongation factor Tu. IUBMB Life 2007; 59:68-75; PMID:17454297; http://dx.doi.org/10.1080/ 15216540701218722. (Pubitemid 46535403)
    • (2007) IUBMB Life , vol.59 , Issue.2 , pp. 68-75
    • Ohtsuki, T.1    Watanabe, Y.-I.2
  • 12
    • 33846057724 scopus 로고    scopus 로고
    • NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • DOI 10.1093/nar/gkl842
    • Pruitt KD, Tatusova T, Maglott DR. NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res 2007; 35(Database issue):D61-5; PMID:17130148; http://dx.doi.org/10.1093/nar/gkl842. (Pubitemid 46056171)
    • (2007) Nucleic Acids Research , vol.35 , Issue.SUPPL. 1
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 13
    • 0035109373 scopus 로고    scopus 로고
    • Trichinella spiralis mtDNA: A nematode mitochondrial genome that encodes a putative ATP8 and normally structured tRNAs and has a gene arrangement relatable to those of coelomate metazoans
    • Lavrov DV, Brown WM. Trichinella spiralis mtDNA: a nematode mitochondrial genome that encodes a putative ATP8 and normally structured tRNAS and has a gene arrangement relatable to those of coelomate metazoans. Genetics 2001; 157:621-37; PMID:11156984. (Pubitemid 32165021)
    • (2001) Genetics , vol.157 , Issue.2 , pp. 621-637
    • Lavrov, D.V.1    Brown, W.M.2
  • 14
    • 33750974470 scopus 로고    scopus 로고
    • An evolutionary 'intermediate state' of mitochondrial translation systems found in Trichinella species of parasitic nematodes: Co-evolution of tRNA and EF-Tu
    • DOI 10.1093/nar/gkl526
    • Arita M, Suematsu T, Osanai A, Inaba T, Kamiya H, Kita K, et al. An evolutionary 'intermediate state' of mitochondrial translation systems found in Trichinella species of parasitic nematodes: co-evolution of tRNA and EF-Tu. Nucleic Acids Res 2006; 34:5291-9; PMID:17012285; http://dx.doi.org/10.1093/nar/ gkl526. (Pubitemid 44742493)
    • (2006) Nucleic Acids Research , vol.34 , Issue.18 , pp. 5291-5299
    • Arita, M.1    Suematsu, T.2    Osanai, A.3    Inaba, T.4    Kamiya, H.5    Kita, K.6    Sisido, M.7    Watanabe, Y.-I.8    Ohtsuki, T.9
  • 15
    • 34250730932 scopus 로고    scopus 로고
    • Mitochondrial genome haplotype hypervariation within the isopod parasitic nematode Thaumamermis cosgrovei
    • DOI 10.1534/genetics.106.069518
    • Tang S, Hyman BC. Mitochondrial genome hap-lotype hypervariation within the isopod parasitic nematode Thaumamermis cosgrovei. Genetics 2007; 176:1139-50; PMID:17435228; http://dx.doi.org/10.1534/genetics.106.069518. (Pubitemid 46961111)
    • (2007) Genetics , vol.176 , Issue.2 , pp. 1139-1150
    • Tang, S.1    Hyman, B.C.2
  • 16
    • 0027502536 scopus 로고
    • Molecular characterization of lengthy mitochondrial DNA duplications from the parasitic nematode Romanomermis culicivorax
    • Azevedo JL, Hyman BC. Molecular characterization of lengthy mitochondrial DNA duplications from the parasitic nematode Romanomermis culicivorax. Genetics 1993; 133:933-42; PMID:8462851. (Pubitemid 23097278)
    • (1993) Genetics , vol.133 , Issue.4 , pp. 933-942
    • Azevedo, J.L.B.1    Hyman, B.C.2
  • 17
    • 28244455890 scopus 로고    scopus 로고
    • The mitochondrial genome of Xiphinema americanum sensu stricto (Nematoda: Enoplea): Considerable economization in the length and structural features of encoded genes
    • DOI 10.1007/s00239-005-0102-7
    • He Y, Jones J, Armstrong M, Lamberti F, Moens M. The mitochondrial genome of Xiphinema america-num sensu stricto (Nematoda: Enoplea): considerable economization in the length and structural features of encoded genes. J Mol Evol 2005; 61:819-33; PMID:16315110; http://dx.doi.org/10.1007/s00239-005-0102-7. (Pubitemid 41706029)
    • (2005) Journal of Molecular Evolution , vol.61 , Issue.6 , pp. 819-833
    • He, Y.1    Jones, J.2    Armstrong, M.3    Lamberti, F.4    Moens, M.5
  • 18
    • 77953481682 scopus 로고    scopus 로고
    • Undetected antisense tRNAs in mitochondrial genomes?
    • PMID:20553583
    • Seligmann H. Undetected antisense tRNAs in mitochondrial genomes? Biol Direct 2010; 5:39; PMID:20553583; http://dx.doi.org/10.1186/1745-6150-5-39.
    • (2010) Biol Direct , vol.5 , pp. 39
    • Seligmann, H.1
  • 19
    • 84858292395 scopus 로고    scopus 로고
    • Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements
    • PMID:22139921
    • Jühling F, Pütz J, Bernt M, Donath A, Middendorf M, Florentz C, et al. Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements. Nucleic Acids Res 2012; 40:2833-45; PMID:22139921; http://dx.doi.org/10.1093/nar/gkr1131.
    • (2012) Nucleic Acids Res , vol.40 , pp. 2833-2845
    • Jühling, F.1    Pütz, J.2    Bernt, M.3    Donath, A.4    Middendorf, M.5    Florentz, C.6
  • 20
    • 65549111754 scopus 로고    scopus 로고
    • Infernal 1.0: Inference of RNA alignments
    • PMID:19307242
    • Nawrocki EP, Kolbe DL, Eddy SR. Infernal 1.0: inference of RNA alignments. Bioinformatics 2009; 25:1335-7; PMID:19307242; http://dx.doi.org/10. 1093/bioinformatics/btp157.
    • (2009) Bioinformatics , vol.25 , pp. 1335-1337
    • Nawrocki, E.P.1    Kolbe, D.L.2    Eddy, S.R.3
  • 21
    • 84883464589 scopus 로고    scopus 로고
    • Mitos: Improved de novo metazoan mitochondrial genome annotation
    • Bernt M, et al. Mitos: Improved de novo metazoan mitochondrial genome annotation. Mol Phylog Evol 2012. In revision; see http://www.bioinf.uni- leipzig.de/Publications/PREPRINTS/09-028.pdfforapreprint.
    • (2012) Mol Phylog Evol
    • Bernt, M.1
  • 22
    • 13444309635 scopus 로고    scopus 로고
    • RALEE\RNA alignment editor in Emacs
    • PMID:15377506
    • Griffiths-Jones S. RALEE\RNA alignment editor in Emacs. Bioinformatics 2005; 21:257-9; PMID:15377506; http://dx.doi.org/10.1093/bioin-formatics/bth489.
    • (2005) Bioinformatics , vol.21 , pp. 257-259
    • Griffiths-Jones, S.1
  • 23
    • 0000122573 scopus 로고
    • PHYLIP-phylogeny inference package (version 3.2)
    • Felsenstein J. PHYLIP-phylogeny inference package (version 3.2). Cladistics 1989; 5:164-6.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 24
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • HN Munro, editor Academic Press, New York
    • Jukes TH, Cantor CR. Evolution of protein molecules. In HN Munro, editor, Mammalian Protein Metabolism. Academic Press, New York, 1969, 21-132.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 26
    • 0033610848 scopus 로고    scopus 로고
    • Processing and editing of overlapping tRNAs in human mitochondria
    • DOI 10.1074/jbc.273.48.31977
    • Reichert A, Rothbauer U, Mörl M. Processing and editing of overlapping tRNAs in human mitochondria. J Biol Chem 1998; 273:31977-84; PMID:9822669; http://dx.doi.org/10.1074/jbc.273.48.31977. (Pubitemid 29177137)
    • (1998) Journal of Biological Chemistry , vol.273 , Issue.48 , pp. 31977-31984
    • Reichert, A.1    Rothbauer, U.2    Morl, M.3
  • 27
    • 4444293128 scopus 로고    scopus 로고
    • Indel-based evolutionary distance and mouse-human divergence
    • DOI 10.1101/gr.2450504
    • Ogurtsov AY, Sunyaev S, Kondrashov AS. Indel-based evolutionary distance and mouse-human divergence. Genome Res 2004; 14:1610-6; PMID:15289479; http://dx.doi.org/10.1101/gr.2450504. (Pubitemid 39193412)
    • (2004) Genome Research , vol.14 , Issue.8 , pp. 1610-1616
    • Ogurtsov, A.Y.1    Sunyaev, S.2    Kondrashov, A.S.3
  • 28
    • 0033554285 scopus 로고    scopus 로고
    • Mimics of yeast tRNAAsp and their recognition by aspartyl-tRNA synthetase
    • PMID:10508395
    • Wolfson AD, Khvorova AM, Sauter C, Florentz C, Giegé R. Mimics of yeast tRNAAsp and their recognition by aspartyl-tRNA synthetase. Biochemistry 1999; 38:11926-32; PMID:10508395; http://dx.doi.org/10.1021/bi9908383.
    • (1999) Biochemistry , vol.38 , pp. 11926-11932
    • Wolfson, A.D.1    Khvorova, A.M.2    Sauter, C.3    Florentz, C.4    Giegé, R.5
  • 30
    • 78049243599 scopus 로고    scopus 로고
    • Evolution of the mito-chondrial genomes of gall midges (Diptera: Cecidomyiidae): rearrangement and severe truncation of tRNA genes
    • PMID:20333197
    • Beckenbach AT, Joy JB. Evolution of the mito-chondrial genomes of gall midges (Diptera: Cecidomyiidae): rearrangement and severe truncation of tRNA genes. Genome Biol Evol 2009; 1:278-87; PMID:20333197; http://dx.doi.org/10. 1093/gbe/evp027.
    • (2009) Genome Biol Evol , vol.1 , pp. 278-287
    • Beckenbach, A.T.1    Joy, J.B.2
  • 31
    • 1942533489 scopus 로고    scopus 로고
    • The Complete Mitochondrial Genome Sequence of the Spider Habronattus oregonensis Reveals Rearranged and Extremely Truncated tRNAs
    • DOI 10.1093/molbev/msh096
    • Masta SE, Boore JL. The complete mitochondrial genome sequence of the spider Habronattus oregonensis reveals rearranged and extremely truncated tRNAs. Mol Biol Evol 2004; 21:893-902; PMID:15014167; http://dx.doi.org/10.1093/ molbev/msh096. (Pubitemid 38529731)
    • (2004) Molecular Biology and Evolution , vol.21 , Issue.5 , pp. 893-902
    • Masta, S.E.1    Boore, J.L.2
  • 32
    • 77956231198 scopus 로고    scopus 로고
    • The mitochondrial genome of the onychophoran Opisthopatus cinctipes (Peripatopsidae) reflects the ancestral mitochondrial gene arrangement of Panarthropoda and Ecdysozoa
    • PMID:20493270
    • Braband A, Cameron SL, Podsiadlowski L, Daniels SR, Mayer G. The mitochondrial genome of the onychophoran Opisthopatus cinctipes (Peripatopsidae) reflects the ancestral mitochondrial gene arrangement of Panarthropoda and Ecdysozoa. Mol Phylogenet Evol 2010; 57:285-92; PMID:20493270; http://dx.doi.org/10.1016/j.ympev.2010.05.011.
    • (2010) Mol Phylogenet Evol , vol.57 , pp. 285-292
    • Braband, A.1    Cameron, S.L.2    Podsiadlowski, L.3    Daniels, S.R.4    Mayer, G.5
  • 33
    • 74649085206 scopus 로고    scopus 로고
    • Complete mito-chondrial genome sequences of the three pelagic chae-tognaths Sagitta nagae, Sagitta decipiens and Sagitta enflata
    • PMID:20374943
    • Miyamoto H, Machida RJ, Nishida S. Complete mito-chondrial genome sequences of the three pelagic chae-tognaths Sagitta nagae, Sagitta decipiens and Sagitta enflata. Comp Biochem Physiol Part D Genomics Proteomics 2010; 5:65-72; PMID:20374943; http://dx.doi.org/10.1016/j.cbd.2009.11.002.
    • (2010) Comp Biochem Physiol Part D Genomics Proteomics , vol.5 , pp. 65-72
    • Miyamoto, H.1    MacHida, R.J.2    Nishida, S.3
  • 34
    • 44649188614 scopus 로고    scopus 로고
    • Two circular chromosomes of unequal copy number make up the mitochondrial genome of the rotifer Brachionus plicatilis
    • PMID:18326862
    • Suga K, Mark Welch DB, Tanaka Y, Sakakura Y, Hagiwara A. Two circular chromosomes of unequal copy number make up the mitochondrial genome of the rotifer Brachionus plicatilis. Mol Biol Evol 2008; 25:1129-37; PMID:18326862; http://dx.doi.org/10.1093/molbev/msn058.
    • (2008) Mol Biol Evol , vol.25 , pp. 1129-1137
    • Suga, K.1    Mark Welch, D.B.2    Tanaka, Y.3    Sakakura, Y.4    Hagiwara, A.5
  • 35
    • 0035172090 scopus 로고    scopus 로고
    • Evidence for import of a lysyl-tRNA into marsupial mitochondria
    • Dörner M, Altmann M, Pääbo S, Mörl M. Evidence for import of a lysyl-tRNA into marsupial mitochondria. Mol Biol Cell 2001; 12:2688-98; PMID:11553708. (Pubitemid 33051934)
    • (2001) Molecular Biology of the Cell , vol.12 , Issue.9 , pp. 2688-2698
    • Dorner, M.1    Altmann, M.2    Paabo, S.3    Morl, M.4
  • 36
    • 77957224734 scopus 로고    scopus 로고
    • Parallel loss of nuclear-encoded mitochondrial aminoacyl-tRNA synthe-tases and mtDNA-encoded tRNAs in Cnidaria
    • PMID:20439315
    • Haen KM, Pett W, Lavrov DV. Parallel loss of nuclear-encoded mitochondrial aminoacyl-tRNA synthe-tases and mtDNA-encoded tRNAs in Cnidaria. Mol Biol Evol 2010; 27:2216-9; PMID:20439315; http://dx.doi.org/10.1093/molbev/ msq112.
    • (2010) Mol Biol Evol , vol.27 , pp. 2216-2219
    • Haen, K.M.1    Pett, W.2    Lavrov, D.V.3
  • 37
    • 50249139663 scopus 로고    scopus 로고
    • Seventeen new complete mtDNA sequences reveal extensive mitochondrial genome evolution within the Demospongiae
    • PMID:18628961
    • Wang X, Lavrov DV. Seventeen new complete mtDNA sequences reveal extensive mitochondrial genome evolution within the Demospongiae. PLoS One 2008; 3:e2723; PMID:18628961; http://dx.doi.org/10.1371/journal.pone.0002723.
    • (2008) PLoS One , vol.3
    • Wang, X.1    Lavrov, D.V.2


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