-
1
-
-
84867744921
-
DNA secondary structures: Stability and function of G-quadruplex structures
-
Bochman, M.L., Paeschke, K. and Zakian, V.A. (2012) DNA secondary structures: stability and function of G-quadruplex structures. Nat. Rev. Genet., 13, 770-780.
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 770-780
-
-
Bochman, M.L.1
Paeschke, K.2
Zakian, V.A.3
-
2
-
-
34249907843
-
Non-B DNA conformations, mutagenesis and disease
-
Wells, R.D. (2007) Non-B DNA conformations, mutagenesis and disease. Trends Biochem. Sci., 32, 271-278.
-
(2007)
Trends Biochem. Sci.
, vol.32
, pp. 271-278
-
-
Wells, R.D.1
-
3
-
-
68549136741
-
G-quadruplex structures: In vivo evidence and function
-
Lipps, H.J. and Rhodes, D. (2009) G-quadruplex structures: in vivo evidence and function. Trends Cell Biol., 19, 414-422.
-
(2009)
Trends Cell Biol.
, vol.19
, pp. 414-422
-
-
Lipps, H.J.1
Rhodes, D.2
-
4
-
-
84877768759
-
G-quadruplex structures are stable and detectable in human genomic DNA
-
Lam, E.Y.N., Beraldi, D., Tannahill, D. and Balasubramanian, S. (2013) G-quadruplex structures are stable and detectable in human genomic DNA. Nat. Commun., 4, 1796.
-
(2013)
Nat. Commun.
, vol.4
, pp. 1796
-
-
Lam, E.Y.N.1
Beraldi, D.2
Tannahill, D.3
Balasubramanian, S.4
-
5
-
-
20144369806
-
Highly prevalent putative quadruplex sequence motifs in human DNA
-
Todd, A.K., Johnston, M. and Neidle, S. (2005) Highly prevalent putative quadruplex sequence motifs in human DNA. Nucleic Acids Res., 33, 2901-2907.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 2901-2907
-
-
Todd, A.K.1
Johnston, M.2
Neidle, S.3
-
6
-
-
20144364292
-
Prevalence of quadruplexes in the human genome
-
Huppert, J.L. and Balasubramanian, S. (2005) Prevalence of quadruplexes in the human genome. Nucleic Acids Res., 33, 2908-2916.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 2908-2916
-
-
Huppert, J.L.1
Balasubramanian, S.2
-
7
-
-
0023788886
-
Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis
-
Sen, D. and Gilbert, W. (1988) Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis. Nature, 334, 364-366.
-
(1988)
Nature
, vol.334
, pp. 364-366
-
-
Sen, D.1
Gilbert, W.2
-
8
-
-
0037015078
-
Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription
-
Siddiqui-Jain, A., Grand, C.L., Bearss, D.J. and Hurley, L.H. (2002) Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription. Proc. Natl. Acad. Sci. U.S.A., 99, 11593-11598.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 11593-11598
-
-
Siddiqui-Jain, A.1
Grand, C.L.2
Bearss, D.J.3
Hurley, L.H.4
-
9
-
-
0013462065
-
A highly conserved repetitive DNA sequence, (TTAGGG)n, present at the telomeres of human chromosomes
-
Moyzis, R.K., Buckingham, J.M., Cram, L.S., Dani, M., Deaven, L.L., Jones, M.D., Meyne, J., Ratliff, R.L. and Wu, J.R. (1988) A highly conserved repetitive DNA sequence, (TTAGGG)n, present at the telomeres of human chromosomes. Proc. Natl. Acad. Sci. U.S.A., 85, 6622-6626.
-
(1988)
Proc. Natl. Acad. Sci. U.S.A.
, vol.85
, pp. 6622-6626
-
-
Moyzis, R.K.1
Buckingham, J.M.2
Cram, L.S.3
Dani, M.4
Deaven, L.L.5
Jones, M.D.6
Meyne, J.7
Ratliff, R.L.8
Wu, J.R.9
-
10
-
-
0025877846
-
Inhibition of telomerase by G-quartet DNA structures
-
Zahler, A.M., Williamson, J.R., Cech, T.R. and Prescott, D.M. (1991) Inhibition of telomerase by G-quartet DNA structures. Nature, 350, 718-720.
-
(1991)
Nature
, vol.350
, pp. 718-720
-
-
Zahler, A.M.1
Williamson, J.R.2
Cech, T.R.3
Prescott, D.M.4
-
11
-
-
0022402513
-
Identification of a specific telomere terminal transferase activity in Tetrahymena extracts
-
Greider, C.W. and Blackburn, E.H. (1985) Identification of a specific telomere terminal transferase activity in Tetrahymena extracts. Cell, 43, 405-413.
-
(1985)
Cell
, vol.43
, pp. 405-413
-
-
Greider, C.W.1
Blackburn, E.H.2
-
12
-
-
0028564951
-
Specific association of human telomerase activity with immortal cells and cancer
-
Kim, N.W., Piatyszek, M.A., Prowse, K.R., Harley, C.B., West, M.D., Ho, P.L., Coviello, G.M., Wright, W.E., Weinrich, S.L. and Shay, J.W. (1994) Specific association of human telomerase activity with immortal cells and cancer. Science, 266, 2011-2015.
-
(1994)
Science
, vol.266
, pp. 2011-2015
-
-
Kim, N.W.1
Piatyszek, M.A.2
Prowse, K.R.3
Harley, C.B.4
West, M.D.5
Ho, P.L.6
Coviello, G.M.7
Wright, W.E.8
Weinrich, S.L.9
Shay, J.W.10
-
13
-
-
37049004147
-
Targeting telomeres and telomerase
-
De Cian, A., Lacroix, L., Douarre, C., Temime-Smaali, N., Trentesaux, C., Riou, J.-F. and Mergny, J.-L. (2008) Targeting telomeres and telomerase. Biochimie, 90, 131-155.
-
(2008)
Biochimie
, vol.90
, pp. 131-155
-
-
De Cian, A.1
Lacroix, L.2
Douarre, C.3
Temime-Smaali, N.4
Trentesaux, C.5
Riou, J.-F.6
Mergny, J.-L.7
-
14
-
-
0037142071
-
Crystal structure of parallel quadruplexes from human telomeric DNA
-
Parkinson, G.N., Lee, M.P.H. and Neidle, S. (2002) Crystal structure of parallel quadruplexes from human telomeric DNA. Nature, 417, 876-880.
-
(2002)
Nature
, vol.417
, pp. 876-880
-
-
Parkinson, G.N.1
Lee, M.P.H.2
Neidle, S.3
-
15
-
-
0027918585
-
Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex
-
Wang, Y. and Patel, D.J. (1993) Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex. Structure, 1, 263-282.
-
(1993)
Structure
, vol.1
, pp. 263-282
-
-
Wang, Y.1
Patel, D.J.2
-
16
-
-
33646943863
-
Human telomeric sequence forms a hybrid-type intramolecular G-quadruplex structure with mixed parallel/antiparallel strands in potassium solution
-
Ambrus, A., Chen, D., Dai, J., Bialis, T., Jones, R.A. and Yang, D. (2006) Human telomeric sequence forms a hybrid-type intramolecular G-quadruplex structure with mixed parallel/antiparallel strands in potassium solution. Nucleic Acids Res., 34, 2723-2735.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 2723-2735
-
-
Ambrus, A.1
Chen, D.2
Dai, J.3
Bialis, T.4
Jones, R.A.5
Yang, D.6
-
17
-
-
33746600695
-
Structure of the human telomere in K+ solution: An intramolecular (3 + 1) G-quadruplex scaffold
-
Luu, K.N., Phan, A.T., Kuryavyi, V., Lacroix, L. and Patel, D.J. (2006) Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J. Am. Chem. Soc., 128, 9963-9970.
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 9963-9970
-
-
Luu, K.N.1
Phan, A.T.2
Kuryavyi, V.3
Lacroix, L.4
Patel, D.J.5
-
18
-
-
67749124298
-
Structure of the human telomere in K+ solution: A stable basket-type G-quadruplex with only two G-tetrad layers
-
Lim, K.W., Amrane, S., Bouaziz, S., Xu, W., Mu, Y., Patel, D.J., Luu, K.N. and Phan, A.T. (2009) Structure of the human telomere in K+ solution: a stable basket-type G-quadruplex with only two G-tetrad layers. J. Am. Chem. Soc., 131, 4301-4309.
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 4301-4309
-
-
Lim, K.W.1
Amrane, S.2
Bouaziz, S.3
Xu, W.4
Mu, Y.5
Patel, D.J.6
Luu, K.N.7
Phan, A.T.8
-
19
-
-
55249109574
-
Stability and kinetics of G-quadruplex structures
-
Lane, A.N., Chaires, J.B., Gray, R.D. and Trent, J.O. (2008) Stability and kinetics of G-quadruplex structures. Nucleic Acids Res., 36, 5482-5515.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 5482-5515
-
-
Lane, A.N.1
Chaires, J.B.2
Gray, R.D.3
Trent, J.O.4
-
20
-
-
0032508468
-
Following G-quartet formation by UV-spectroscopy
-
Mergny, J.L., Phan, A.T. and Lacroix, L. (1998) Following G-quartet formation by UV-spectroscopy. FEBS Lett., 435, 74-78.
-
(1998)
FEBS Lett.
, vol.435
, pp. 74-78
-
-
Mergny, J.L.1
Phan, A.T.2
Lacroix, L.3
-
21
-
-
0344304471
-
Studies on the structure and dynamics of the human telomeric G quadruplex by single-molecule fluorescence resonance energy transfer
-
Ying, L., Green, J.J., Li, H., Klenerman, D. and Balasubramanian, S. (2003) Studies on the structure and dynamics of the human telomeric G quadruplex by single-molecule fluorescence resonance energy transfer. Proc. Natl. Acad. Sci. U.S.A., 100, 14629-14634.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 14629-14634
-
-
Ying, L.1
Green, J.J.2
Li, H.3
Klenerman, D.4
Balasubramanian, S.5
-
22
-
-
30044448463
-
Extreme conformational diversity in human telomeric DNA
-
Lee, J.Y., Okumus, B., Kim, D.S. and Ha, T. (2005) Extreme conformational diversity in human telomeric DNA. Proc. Natl. Acad. Sci. U.S.A., 102, 18938-18943.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 18938-18943
-
-
Lee, J.Y.1
Okumus, B.2
Kim, D.S.3
Ha, T.4
-
23
-
-
76349116980
-
Human telomeric G-quadruplex: Thermodynamic and kinetic studies of telomeric quadruplex stability
-
Chaires, J.B. (2010) Human telomeric G-quadruplex: thermodynamic and kinetic studies of telomeric quadruplex stability. FEBS J., 277, 1098-1106.
-
(2010)
FEBS J.
, vol.277
, pp. 1098-1106
-
-
Chaires, J.B.1
-
24
-
-
0038728819
-
Stability of intramolecular DNA quadruplexes: Comparison with DNA duplexes
-
Risitano, A. and Fox, K.R. (2003) Stability of intramolecular DNA quadruplexes: comparison with DNA duplexes. Biochemistry, 42, 6507-6513.
-
(2003)
Biochemistry
, vol.42
, pp. 6507-6513
-
-
Risitano, A.1
Fox, K.R.2
-
25
-
-
47249114945
-
Kinetics and mechanism of K+- and Na+-induced folding of models of human telomeric DNA into G-quadruplex structures
-
Gray, R.D. and Chaires, J.B. (2008) Kinetics and mechanism of K+- and Na+-induced folding of models of human telomeric DNA into G-quadruplex structures. Nucleic Acids Res., 36, 4191-4203.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 4191-4203
-
-
Gray, R.D.1
Chaires, J.B.2
-
26
-
-
6044257949
-
Determining the folding and unfolding rate constants of nucleic acids by biosensor. Application to telomere G-quadruplex
-
Zhao, Y., Kan, Z., Zeng, Z., Hao, Y., Chen, H. and Tan, Z. (2004) Determining the folding and unfolding rate constants of nucleic acids by biosensor. Application to telomere G-quadruplex. J. Am .Chem. Soc., 126, 13255-13264.
-
(2004)
J. Am .Chem. Soc.
, vol.126
, pp. 13255-13264
-
-
Zhao, Y.1
Kan, Z.2
Zeng, Z.3
Hao, Y.4
Chen, H.5
Tan, Z.6
-
27
-
-
84876397592
-
Mechanical unfolding of human telomere G-quadruplex DNA probed by integrated fluorescence and magnetic tweezers spectroscopy
-
Long, X., Parks, J.W., Bagshaw, C.R. and Stone, M.D. (2013) Mechanical unfolding of human telomere G-quadruplex DNA probed by integrated fluorescence and magnetic tweezers spectroscopy. Nucleic Acids Res., 41, 2746-2755.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 2746-2755
-
-
Long, X.1
Parks, J.W.2
Bagshaw, C.R.3
Stone, M.D.4
-
28
-
-
0018101150
-
Models for the specific adhesion of cells to cells
-
Bell, G.I. (1978) Models for the specific adhesion of cells to cells. Science, 200, 618-627.
-
(1978)
Science
, vol.200
, pp. 618-627
-
-
Bell, G.I.1
-
29
-
-
0031001349
-
Dynamic strength of molecular adhesion bonds
-
Evans, E. and Ritchie, K. (1997) Dynamic strength of molecular adhesion bonds. Biophys. J., 72, 1541-1555.
-
(1997)
Biophys. J.
, vol.72
, pp. 1541-1555
-
-
Evans, E.1
Ritchie, K.2
-
30
-
-
80053279143
-
A single-molecule platform for investigation of interactions between G-quadruplexes and small-molecule ligands
-
Koirala, D., Dhakal, S., Ashbridge, B., Sannohe, Y., Rodriguez, R., Sugiyama, H., Balasubramanian, S. and Mao, H. (2011) A single-molecule platform for investigation of interactions between G-quadruplexes and small-molecule ligands. Nat. Chem., 3, 782-787.
-
(2011)
Nat. Chem.
, vol.3
, pp. 782-787
-
-
Koirala, D.1
Dhakal, S.2
Ashbridge, B.3
Sannohe, Y.4
Rodriguez, R.5
Sugiyama, H.6
Balasubramanian, S.7
Mao, H.8
-
31
-
-
4243754128
-
A nonequilibrium equality for free energy differences
-
Jarzynski, C. (1997) A nonequilibrium equality for free energy differences. Phys. Rev. Lett., 78, 2690-2693.
-
(1997)
Phys. Rev. Lett.
, vol.78
, pp. 2690-2693
-
-
Jarzynski, C.1
-
32
-
-
78751689408
-
Improved high-force magnetic tweezers for stretching and refolding of proteins and short DNA
-
Chen, H., Fu, H., Zhu, X., Cong, P., Nakamura, F. and Yan, J. (2011) Improved high-force magnetic tweezers for stretching and refolding of proteins and short DNA. Biophys. J., 100, 517-523.
-
(2011)
Biophys. J.
, vol.100
, pp. 517-523
-
-
Chen, H.1
Fu, H.2
Zhu, X.3
Cong, P.4
Nakamura, F.5
Yan, J.6
-
33
-
-
0030064676
-
DNA: An extensible molecule
-
Cluzel, P., Lebrun, A., Heller, C., Lavery, R., Viovy, J.L., Chatenay, D. and Caron, F. (1996) DNA: an extensible molecule. Science, 271, 792-794.
-
(1996)
Science
, vol.271
, pp. 792-794
-
-
Cluzel, P.1
Lebrun, A.2
Heller, C.3
Lavery, R.4
Viovy, J.L.5
Chatenay, D.6
Caron, F.7
-
34
-
-
0030024985
-
Overstretching B-DNA: The elastic response of individual double-stranded and single-stranded DNA molecules
-
Smith, S.B., Cui, Y. and Bustamante, C. (1996) Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules. Science, 271, 795-799.
-
(1996)
Science
, vol.271
, pp. 795-799
-
-
Smith, S.B.1
Cui, Y.2
Bustamante, C.3
-
35
-
-
77956059631
-
Two distinct overstretched DNA states
-
Fu, H., Chen, H., Marko, J.F. and Yan, J. (2010) Two distinct overstretched DNA states. Nucleic Acids Res., 38, 5594-5600.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 5594-5600
-
-
Fu, H.1
Chen, H.2
Marko, J.F.3
Yan, J.4
-
36
-
-
84874602376
-
Revealing the competition between peeled ssDNA, melting bubbles, and S-DNA during DNA overstretching by single-molecule calorimetry
-
Zhang, X., Chen, H., Le, S., Rouzina, I., Doyle, P.S. and Yan, J. (2013) Revealing the competition between peeled ssDNA, melting bubbles, and S-DNA during DNA overstretching by single-molecule calorimetry. Proc. Natl. Acad. Sci. U.S.A., 110, 3865-3870.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 3865-3870
-
-
Zhang, X.1
Chen Le, H.S.2
Rouzina, I.3
Doyle, P.S.4
Yan, J.5
-
37
-
-
80052513932
-
Differential mechanical stability of filamin A rod segments
-
Chen, H., Zhu, X., Cong, P., Sheetz, M.P., Nakamura, F. and Yan, J. (2011) Differential mechanical stability of filamin A rod segments. Biophys. J., 101, 1231-1237.
-
(2011)
Biophys. J.
, vol.101
, pp. 1231-1237
-
-
Chen, H.1
Zhu, X.2
Cong, P.3
Sheetz, M.P.4
Nakamura, F.5
Yan, J.6
-
38
-
-
84873651708
-
Long-loop G-quadruplexes are misfolded population minorities with fast transition kinetics in human telomeric sequences
-
Koirala, D., Ghimire, C., Bohrer, C., Sannohe, Y., Sugiyama, H. and Mao, H. (2013) Long-loop G-quadruplexes are misfolded population minorities with fast transition kinetics in human telomeric sequences. J. Am. Chem. Soc., 135, 2235-2241.
-
(2013)
J. Am. Chem. Soc.
, vol.135
, pp. 2235-2241
-
-
Koirala, D.1
Ghimire, C.2
Bohrer, C.3
Sannohe, Y.4
Sugiyama, H.5
Mao, H.6
-
39
-
-
42749104291
-
Overstretching and force-driven strand separation of double-helix DNA
-
Cocco, S., Yan, J., Léger, J.-F., Chatenay, D. and Marko, J.F. (2004) Overstretching and force-driven strand separation of double-helix DNA. Phys. Rev. E. Stat. Nonlin. Soft Matter Phys., 70, 011910.
-
(2004)
Phys. Rev. E. Stat. Nonlin. Soft Matter Phys.
, vol.70
, pp. 011910
-
-
Cocco, S.1
Yan, J.2
Léger, J.-F.3
Chatenay, D.4
Marko, J.F.5
-
40
-
-
84857897334
-
Detection of steps in single molecule data
-
Aggarwal, T., Materassi, D., Davison, R., Hays, T. and Salapaka, M. (2012) Detection of steps in single molecule data. Cell. Mol. Bioeng., 5, 14-31.
-
(2012)
Cell. Mol. Bioeng.
, vol.5
, pp. 14-31
-
-
Aggarwal, T.1
Materassi, D.2
Davison, R.3
Hays, T.4
Salapaka, M.5
-
41
-
-
0035146646
-
Force-induced melting of the DNA double helix 1. Thermodynamic analysis
-
Rouzina, I. and Bloomfield, V.A. (2001) Force-induced melting of the DNA double helix 1. Thermodynamic analysis. Biophys. J., 80, 882-893.
-
(2001)
Biophys. J.
, vol.80
, pp. 882-893
-
-
Rouzina, I.1
Bloomfield, V.A.2
-
42
-
-
84893186804
-
Kinetic partitioning modulates human telomere DNA G-quadruplex structural polymorphism
-
Long, X. and Stone, M.D. (2013) Kinetic partitioning modulates human telomere DNA G-quadruplex structural polymorphism. PLoS One, 8, e83420.
-
(2013)
PLoS One
, vol.8
-
-
Long, X.1
Stone, M.D.2
-
43
-
-
84862227693
-
Energetic basis of human telomeric DNA folding into G-quadruplex structures
-
Bon?cina, M., Lah, J., Prislan, I. and Vesnaver, G. (2012) Energetic basis of human telomeric DNA folding into G-quadruplex structures. J. Am. Chem. Soc., 134, 9657-9663.
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 9657-9663
-
-
Boncina, M.1
Lah, J.2
Prislan, I.3
Vesnaver, G.4
-
44
-
-
84877028062
-
Direct measurement of sequential folding pathway and energy landscape of human telomeric G-quadruplex structures
-
Li, W., Hou, X., Wang, P., Xi, X. and Li, M. (2013) Direct measurement of sequential folding pathway and energy landscape of human telomeric G-quadruplex structures. J. Am. Chem. Soc., 135, 6423-6426.
-
(2013)
J. Am. Chem. Soc.
, vol.135
, pp. 6423-6426
-
-
Li, W.1
Hou, X.2
Wang, P.3
Xi, X.4
Li, M.5
|