메뉴 건너뛰기




Volumn 166, Issue 1, 2014, Pages 10-18

The evolution of methodologies for genomic prediction

Author keywords

Bayesian regression; Genomic prediction; Linear models

Indexed keywords


EID: 84905588839     PISSN: 18711413     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.livsci.2014.05.031     Document Type: Article
Times cited : (19)

References (38)
  • 1
    • 77949293856 scopus 로고    scopus 로고
    • Hot topic: a unified approach to utilize phenotypic, full pedigree, and genomic information for genetic evaluation of Holstein final score
    • Aguilar I., Misztal I., Johnson D.L., Legarra A., Tsuruta S., Lawlor T.J. Hot topic: a unified approach to utilize phenotypic, full pedigree, and genomic information for genetic evaluation of Holstein final score. J. Dairy Sci. 2010, 93:743-752.
    • (2010) J. Dairy Sci. , vol.93 , pp. 743-752
    • Aguilar, I.1    Misztal, I.2    Johnson, D.L.3    Legarra, A.4    Tsuruta, S.5    Lawlor, T.J.6
  • 3
    • 84862511727 scopus 로고    scopus 로고
    • Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels
    • Erbe M., Hayes B.J., Matukumalli L.K., Goswami S., Bowman P.J., Reich C.M., Mason B.A., Goddard M.E. Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels. J. Dairy Sci. 2012, 95:4114-4129.
    • (2012) J. Dairy Sci. , vol.95 , pp. 4114-4129
    • Erbe, M.1    Hayes, B.J.2    Matukumalli, L.K.3    Goswami, S.4    Bowman, P.J.5    Reich, C.M.6    Mason, B.A.7    Goddard, M.E.8
  • 5
    • 84893786682 scopus 로고    scopus 로고
    • Bayesian methods applied to GWAS
    • Springer, Berlin, (Chapter in), C. Gondro, J.H.J. van der Werf, B. Hayes (Eds.)
    • Fernando R.L., Garrick D.J. Bayesian methods applied to GWAS. Genome-Wide Association Studies and Genomic Prediction 2013, Springer, Berlin, (Chapter in). C. Gondro, J.H.J. van der Werf, B. Hayes (Eds.).
    • (2013) Genome-Wide Association Studies and Genomic Prediction
    • Fernando, R.L.1    Garrick, D.J.2
  • 6
    • 84905564517 scopus 로고    scopus 로고
    • A Bayesian method to combine large numbers of genotyped and non-genotyped animals for whole genome analyses
    • accepted for publication
    • Fernando R.L., Dekkers J.C.M., Garrick D.J. A Bayesian method to combine large numbers of genotyped and non-genotyped animals for whole genome analyses. Genet. Sel. Evol. 46 2014, accepted for publication.
    • (2014) Genet. Sel. Evol. 46
    • Fernando, R.L.1    Dekkers, J.C.M.2    Garrick, D.J.3
  • 7
    • 84887181931 scopus 로고    scopus 로고
    • Implementing a QTL detection study (GWAS) using genomic prediction methodology
    • Springer, Berlin, (Chapter in), C. Gondro, J.H.J. van der Werf, B. Hayes (Eds.)
    • Garrick D.J., Fernando R.L. Implementing a QTL detection study (GWAS) using genomic prediction methodology. Genome-Wide Association Studies and Genomic Prediction 2013, Springer, Berlin, (Chapter in). C. Gondro, J.H.J. van der Werf, B. Hayes (Eds.).
    • (2013) Genome-Wide Association Studies and Genomic Prediction
    • Garrick, D.J.1    Fernando, R.L.2
  • 9
    • 77949854404 scopus 로고    scopus 로고
    • Deregressing estimated breeding values and weighting information for genomic regression analyses
    • Garrick D.J., Taylor J.F., Fernando R.L. Deregressing estimated breeding values and weighting information for genomic regression analyses. Genet. Sel. Evol. 2009, 41:55.
    • (2009) Genet. Sel. Evol. , vol.41 , pp. 55
    • Garrick, D.J.1    Taylor, J.F.2    Fernando, R.L.3
  • 10
    • 84905584550 scopus 로고
    • Werke (in German) 9, Göttingen: Köninglichen Gesellschaft der Wissenschaften.
    • Gauss, Carl Friedrich (1903), Werke (in German) 9, Göttingen: Köninglichen Gesellschaft der Wissenschaften.
    • (1903)
    • Gauss1    Friedrich, C.2
  • 11
    • 0021518209 scopus 로고
    • Stochastic relaxation, gibbs distributions, and the Bayesian restoration of images
    • Geman S., Geman D. Stochastic relaxation, gibbs distributions, and the Bayesian restoration of images. IEEE Trans. Pattern Anal. Mach. Intell. 1984, 6:721-741.
    • (1984) IEEE Trans. Pattern Anal. Mach. Intell. , vol.6 , pp. 721-741
    • Geman, S.1    Geman, D.2
  • 14
    • 0001724911 scopus 로고
    • The genetic basis for constructing selection indexes
    • Hazel L.N. The genetic basis for constructing selection indexes. Genetics 1943, 28:476-490.
    • (1943) Genetics , vol.28 , pp. 476-490
    • Hazel, L.N.1
  • 15
    • 0017288665 scopus 로고
    • A simple way for calculating the inverse of a numerator relationship matrix used in prediction of breeding values
    • Henderson C.R. A simple way for calculating the inverse of a numerator relationship matrix used in prediction of breeding values. Biometrics 1976, 32:69-83.
    • (1976) Biometrics , vol.32 , pp. 69-83
    • Henderson, C.R.1
  • 16
    • 84905583093 scopus 로고
    • Applications of Linear Models in Animal Breeding. Guelph, Ont: University of Guelph. ISBN 0-88955-030-1.
    • Henderson, CR (1984). Applications of Linear Models in Animal Breeding. Guelph, Ont: University of Guelph. ISBN 0-88955-030-1.
    • (1984)
    • Henderson, C.R.1
  • 17
    • 0001198091 scopus 로고
    • Estimation of environmental and genetic trends from records subject to culling
    • Henderson C.R., Kempthorne O., Searle S.R., Von Krosigk C.N. Estimation of environmental and genetic trends from records subject to culling. Biometrics 1959, 13:192-218.
    • (1959) Biometrics , vol.13 , pp. 192-218
    • Henderson, C.R.1    Kempthorne, O.2    Searle, S.R.3    Von Krosigk, C.N.4
  • 19
    • 75949112012 scopus 로고    scopus 로고
    • Genomic prediction of simulated multi-breed and purebred performance using observed 50k SNP genotypes
    • Kizilkaya K., Fernando R.L., Garrick D.J. Genomic prediction of simulated multi-breed and purebred performance using observed 50k SNP genotypes. J. Anim. Sci. 2010, 88:544-551.
    • (2010) J. Anim. Sci. , vol.88 , pp. 544-551
    • Kizilkaya, K.1    Fernando, R.L.2    Garrick, D.J.3
  • 20
    • 70349300420 scopus 로고    scopus 로고
    • A relationship matrix including full pedigree and genomic information
    • Legarra A., Aguilar I., Misztal I. A relationship matrix including full pedigree and genomic information. J. Dairy Sci. 2009, 92:4656-4663.
    • (2009) J. Dairy Sci. , vol.92 , pp. 4656-4663
    • Legarra, A.1    Aguilar, I.2    Misztal, I.3
  • 21
    • 75949116177 scopus 로고    scopus 로고
    • Genetic evaluation of Angus cattle for carcass marbling using ultrasound and genomic indicators
    • MacNeil M.D., Nkrumah J.D., Woodward B.W., Northcutt S.L. Genetic evaluation of Angus cattle for carcass marbling using ultrasound and genomic indicators. J. Anim. Sci. 2010, 88:517-522.
    • (2010) J. Anim. Sci. , vol.88 , pp. 517-522
    • MacNeil, M.D.1    Nkrumah, J.D.2    Woodward, B.W.3    Northcutt, S.L.4
  • 22
    • 0035045051 scopus 로고    scopus 로고
    • Prediction of total genetic value using genome-wide dense marker maps
    • Meuwissen T.H.E., Hayes B.J., Goddard M.E. Prediction of total genetic value using genome-wide dense marker maps. Genetics 2001, 157:1819-1829.
    • (2001) Genetics , vol.157 , pp. 1819-1829
    • Meuwissen, T.H.E.1    Hayes, B.J.2    Goddard, M.E.3
  • 23
    • 70349301934 scopus 로고    scopus 로고
    • Computing procedures for genetic evaluation including phenotypic, full pedigree, and genomic information
    • Misztal I., Legarra A., Aguilar I. Computing procedures for genetic evaluation including phenotypic, full pedigree, and genomic information. J. Dairy Sci. 2009, 92:4648-4655.
    • (2009) J. Dairy Sci. , vol.92 , pp. 4648-4655
    • Misztal, I.1    Legarra, A.2    Aguilar, I.3
  • 24
    • 77956889208 scopus 로고
    • Recovery of inter-block information when block sizes are unequal
    • Patterson H.D., Thompson R. Recovery of inter-block information when block sizes are unequal. Biometrika 1971, 62:545-554.
    • (1971) Biometrika , vol.62 , pp. 545-554
    • Patterson, H.D.1    Thompson, R.2
  • 25
    • 0017027786 scopus 로고
    • Computing the diagonal elements and inverse of a large numerator relationship matrix
    • Quaas R.L. Computing the diagonal elements and inverse of a large numerator relationship matrix. Biometrics 1976, 32:949-953.
    • (1976) Biometrics , vol.32 , pp. 949-953
    • Quaas, R.L.1
  • 27
    • 84870558170 scopus 로고    scopus 로고
    • Accuracy of direct genomic breeding values for nationally evaluated traits in US Limousin and Simmental beef cattle
    • Saatchi M., Schnabel R.D., Rolf M.M., Taylor J.F., Garrick D.J. Accuracy of direct genomic breeding values for nationally evaluated traits in US Limousin and Simmental beef cattle. Genet. Sel. Evol. 2012, 44:38.
    • (2012) Genet. Sel. Evol. , vol.44 , pp. 38
    • Saatchi, M.1    Schnabel, R.D.2    Rolf, M.M.3    Taylor, J.F.4    Garrick, D.J.5
  • 28
    • 84882651849 scopus 로고    scopus 로고
    • Impact of genetic relationships on the accuracy of direct genomic breeding values in Hereford beef cattle
    • Saatchi M., Ward J., Garrick D.J. Impact of genetic relationships on the accuracy of direct genomic breeding values in Hereford beef cattle. J. Anim. Sci. 2013, 91:1538-1551.
    • (2013) J. Anim. Sci. , vol.91 , pp. 1538-1551
    • Saatchi, M.1    Ward, J.2    Garrick, D.J.3
  • 30
    • 67649227451 scopus 로고    scopus 로고
    • Technical note: derivation of equivalent computing algorithms for genomic predictions and reliabilities of animal merit
    • Strandén I., Garrick D.J. Technical note: derivation of equivalent computing algorithms for genomic predictions and reliabilities of animal merit. J. Dairy Sci. 2009, 92:2971-2975.
    • (2009) J. Dairy Sci. , vol.92 , pp. 2971-2975
    • Strandén, I.1    Garrick, D.J.2
  • 32
    • 85025781716 scopus 로고
    • Fixed or random contemporary groups in genetic evaluations
    • Ugarte E, Alenda R., Carabano M.J. Fixed or random contemporary groups in genetic evaluations. Dairy Sci. 1992, 75:269-278.
    • (1992) Dairy Sci. , vol.75 , pp. 269-278
    • Ugarte, E.1    Alenda, R.2    Carabano, M.J.3
  • 34
    • 79956273022 scopus 로고    scopus 로고
    • The genomic evaluation system in the United States: past, present, future
    • Wiggans G.R., VanRaden P.M., Cooper T.A. The genomic evaluation system in the United States: past, present, future. J. Dairy Sci. 2011, 94:3202-3211.
    • (2011) J. Dairy Sci. , vol.94 , pp. 3202-3211
    • Wiggans, G.R.1    VanRaden, P.M.2    Cooper, T.A.3
  • 37
    • 0001445915 scopus 로고
    • The methods of path coefficients
    • Wright S. The methods of path coefficients. Ann. Math. Stat. 1934, 5:161-215.
    • (1934) Ann. Math. Stat. , vol.5 , pp. 161-215
    • Wright, S.1
  • 38
    • 84859592582 scopus 로고    scopus 로고
    • A Bayesian antedependence model for whole genome prediction
    • Yang W., Tempelman R.J. A Bayesian antedependence model for whole genome prediction. Genetics 2012, 190:1491-1501.
    • (2012) Genetics , vol.190 , pp. 1491-1501
    • Yang, W.1    Tempelman, R.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.