Deregressing estimated breeding values and weighting information for genomic regression analyses

Genetics Selection Evolution

Volumn 41, Issue 1, 2009, Pages

  Garrick, Dorian J ^a,b   Taylor, Jeremy F ^c   Fernando, Rohan L ^a  

^a IOWA STATE UNIVERSITY   (United States)

^b MASSEY UNIVERSITY   (New Zealand)

^c UNIVERSITY OF MISSOURI   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENETIC MARKER; GENOME; GENOTYPE; HETEROGENEITY; PHENOTYPE; REGRESSION ANALYSIS;

HUMAN HERPESVIRUS 4;

ANIMAL; ARTICLE; BIOLOGICAL MODEL; BREEDING; FEMALE; GENE LINKAGE DISEQUILIBRIUM; GENETIC LINKAGE; GENETIC MARKER; GENOME; GENOTYPE; HAPLOTYPE; MALE; METHODOLOGY; PHENOTYPE; REGRESSION ANALYSIS;

ANIMALS; BREEDING; FEMALE; GENETIC MARKERS; GENOME; GENOTYPE; HAPLOTYPES; LINKAGE (GENETICS); LINKAGE DISEQUILIBRIUM; MALE; MODELS, GENETIC; PHENOTYPE; REGRESSION ANALYSIS;

EID: 77949854404     PISSN: 0999193X     EISSN: 12979686     Source Type: Journal    
DOI: 10.1186/1297-9686-41-55     Document Type: Article

References (22)

1. Prediction of total genetic value using genome-wide dense marker maps. THE Meuwissen BJ Hayes ME Goddard, Genetics 2001 157 1819 1829 11290733
2. Derivation, calculation, and use of national animal model information. PM VanRaden GR Wiggans, J Dairy Sci 1991 74 8 2737 2746 http://www.hubmed.org/ display.cgi?uids=1918547 1918547
3. Association analysis of adinopectin and somatostatin polymorphisms on BTA1 with growth and carcass traits in Angus Association analysis of adinopectin and somatostatin polymorphisms on BTA1 with growth and carcass traits in Angus cattle. NMTJ Morsci RD Schnabel, Anim Genet 2006 37 554 562 10.1111/j.1365-2052. 2006.01528.x 17121600
4. Interval and composite interval mapping of somatic cell score, yield, and components of milk in dairy cattle. SL Rodriguez-Zas BR Southey DW Heyen HA Lewin, J Dairy Sci 2002 85 11 3081 3091 12487475
5. Mapping quantitative trait loci controlling milk production in dairy cattle by exploiting progeny testing. M Georges D Nielsen M Mackinnon A Mishra R Okimoto AT Pasquino LS Sargeant A Sorensen MR Steele X Zhao, Genetics 1995 139 2 907 920 7713441
6. Quantitative trait loci analysis for five milk production traits on chromosome six in the Dutch Holstein-Friesian population. RJ Spelman W Coppieters L Karim JA van Arendonk H Bovenhuis, Genetics 1996 144 4 1799 1808 8978065
7. Detection of putative loci affecting conformational type traits in an elite population of United States Holsteins using microsatellite markers. MS Ashwell Y Da PM VanRaden CE Rexroad RH Miller, J Dairy Sci 1998 81 4 1120 1125 9594401
8. Mapping quantitative trait loci affecting dairy conformation to chromosome 27 in two Holstein grandsire families. CP Van Tassell TS Sonstegard MS Ashwell, J Dairy Sci 2004 87 2 450 457 14762088
9. Interbull survey on the use of genomic information. A Loberg JW Durr, Proc Interbull Intl Workshop 2009
10. Prediction of identity by descent probabilities from marker-haplotyes. THE Meuwissen ME Goddard, Genet Sel Evol 2001 33 605 634 10.1186/1297-9686-33-6- 605 11742632
11. Effect of total alleleic relationship on accuracy of evaluation and response to selection. A Nejati-Javaremi C Smith JP Gibson, J Anim Sci 1997 75 1738 1745 9222829
12. Efficient methods to compute genomic predictions. PM VanRaden, J Dairy Sci 2008 91 11 4414 4423 10.3168/jds.2007-0980 18946147
13. Technical note: Derivation of equivalent computing algorithms for genomic predictions and reliabilities of animal merit. I Strandén DJ Garrick, J Dairy Sci 2009 92 6 2971 2975 http://www.hubmed.org/display.cgi?uids=19448030 10.3168/jds.2008-1929 19448030
14. DS Falconer TFC Mackay, Introduction to Quantitative Genetics New York: Longman, Inc fourth 1996
15. Additive genetic variability and the Bayesian alphabet. D Gianola G de los Campos WG Hill E Manfredi R Fernando, Genetics 2009 183 347 363 10.1534/genetics.109.103952 19620397
16. LD Van Vleck, Selection index and introduction to mixed model methods Boca Raton: CRC 1993 chap. Genes identical by descent - the basis of genetic likeness 49
17. Accuracy of genomic selection using different methods to define haplotypes. MPL Calus THE Meuwissen APW de Roos RF Veerkamp, Genetics 2008 178 553 561 10.1534/genetics.107.080838 18202394
18. Predictive ability of direct genomic values for lifetime net merit of Holstein sires using selected subsets of single nucleotide polymorphism markers. KA Weigel G de los Campos O Gonzlez-Recio H Naya XL Wu N Long GJ Rosa D Gianola, J Dairy Sci 2009 92 10 5248 5257 10.3168/jds.2009-2092 19762843
19. Best linear unbiased estimation and prediction under a selection model. CR Henderson, Biometrics 1975 31 423 449 10.2307/2529430 1174616
20. Genetic evaluation for herd life in Canada. L Jairath JC Dekkers LR Schaeffer Z Liu EB Burnside B Kolstad, J Dairy Sci 1998 81 2 550 562 9532510
21. R Mrode, BLUP univariate models with one random effect. In Linear Models for the Prediction of Animal Breeding Values Cambridge: CABI 2005
22. Comparison of estimated breeding values, daughter yield deviations and de-regressed proofs within a whole genome scan for QTL. H Thomsen N Reinsch N Xu C Looft S Grupe C Kuhn GA Brockmann M Schwerin B Leyhe-Horn S Hiendleder G Erhardt I Medjugorac I Russ M Forster B Brenig F Reinhardt R Reents J Blumel G Averdunk E Kalm, J Anim Breed Genet 2001 118 357 370 10.1046/j.1439-0388.2001. 00302.x