Thalassobius aquaeponti sp. nov., an alphaproteobacterium isolated from seawater

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 106, Issue 3, 2014, Pages 535-542

  Park, Sooyeon ^a   Jung, Yong Taek ^a,b   Won, Sung Min ^a   Park, Ja Min ^a   Yoon, Jung Hoon ^a  

^a Sungkyunkwan University   (South Korea)

^b University of Science and Technology (UST)   (South Korea)

Author keywords

Novel species; Polyphasic taxonomy; Seawater; Thalassobius aquaeponti

Indexed keywords

PHOSPHATIDYLCHOLINE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; RNA 16S; SEA WATER; UBIDECARENONE;

ALPHAPROTEOBACTERIA; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM ISOLATION; CHEMOTAXONOMY; CONTROLLED STUDY; DNA BASE COMPOSITION; DNA DNA HYBRIDIZATION; MICROBIAL MORPHOLOGY; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PH MEASUREMENT; PHYLOGENETIC TREE; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE HOMOLOGY; SOUTH KOREA; THALASSOBIUS AESTUARII; THALASSOBIUS AQUAEPONTI;

BACTERIA (MICROORGANISMS); THALASSOBIUS;

EID: 84905576277     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-014-0225-1     Document Type: Article

References (32)

1. Arahal DR, Macián MC, Garay E, Pujalte MJ (2005) Thalassobius mediterraneus gen. nov., sp. nov., and reclassification of Ruegeria gelatinovorans as Thalassobius gelatinovorus comb. nov. Int J Syst Evol Microbiol 55:2371-2376 (Pubitemid 41646417)
2. Bruns A, Rohde M, Berthe-Corti L (2001) Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment. Int J Syst Evol Microbiol 51:1997-2006 (Pubitemid 33107420)
3. Chen MH, Sheu SY, Chen CA, Wang JT, Chen WM (2011) Shimia isoporae sp. nov., isolated from the reefbuilding coral Isopora palifera. Int J Syst Evol Microbiol 61:823-827
4. Choi DH, Cho BC (2006) Shimia marina gen. nov., sp. nov., a novel bacterium of the Roseobacter clade isolated from biofilm in a coastal fish farm. Int J Syst Evol Microbiol 56:1869-1873 (Pubitemid 44288413)
5. Euzéby JP (1997) List of bacterial names with standing in nomenclature: a folder available on the internet. Int J Syst Bacteriol 47:590-592 (List of Prokaryotic names with Standing in Nomenclature. URL: http://www.bacterio.net)
6. Ezaki T, Hashimoto Y, Yabuuchi E (1989) Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224-229
7. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symp Ser 41:95-98
8. Hameed A, Shahina M, Lin SY, Lai WA, Hsu YH, Liu YC, Huang YM, Young CC (2013) Shimia biformata sp. nov., isolated from surface seawater, and emended description of the genus Shimia Choi and Cho 2006. Int J Syst Evol Microbiol 63:4533-4539
9. Hyun DW, Kim MS, Shin NR, Kim JY, Kim PS, Whon TW, Yun JH, Bae JW (2013) Shimia haliotis sp. nov., a bacterium isolated from the gut of an abalone, Haliotis discus hannai. Int J Syst Evol Microbiol 63:4248-4253
10. Komagata K, Suzuki KI (1987) Lipid and cell wall analysis in bacterial systematics. Methods Microbiol 19:161-207
11. Minnikin DE, Patel PV, Alshamaony L, Goodfellow M (1977) Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27:104-117 (Pubitemid 8112397)
12. Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233-241 (Pubitemid 14058168)
13. Park S, Yoon JH (2014) Octadecabacter jejudonensis sp. nov., isolated from the junction between the ocean and a freshwater spring and emended description of the genus Octadecabacter. Int J Syst Evol Microbiol 64:719-724
14. Park S, Lee MH, Lee JS, Oh TK, Yoon JH (2012) Thalassobius maritimus sp. nov., isolated from seawater. Int J Syst Evol Microbiol 62:8-12
15. Park S, Jung YT, Yoon JH (2013a) Pelagicola litorisediminis sp. nov., a novel alphaproteobacterium isolated from tidal flat sediment. Antonie Van Leeuwenhoek 104:103-110
16. Park S, Jung YT, Lee JS, Lee KC, Yoon JH (2013b) Sabulilitoribacter multivorans gen. nov., sp. nov., a polysaccha-ride- degrading bacterium of the family Flavobacteriaceae isolated from seashore sand. Antonie Van Leeuwenhoek 104:973-981
17. Park S, Lee JS, Lee KC, Yoon JH (2013c) Geojedonia litorea gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from coastal seawater. Antonie Van Leeuwenhoek 103:1255-1262
18. Penesyan A, Breider S, Schumann P, Tindall BJ, Egan S, Brinkhoff T (2013) Epibacterium ulvae gen. nov., sp. nov., epibiotic bacteria isolated from the surface of a marine alga. Int J Syst Evol Microbiol 63:1589-1596
19. Rüger HJ, Höfle MG (1992) Marine star-shaped-aggregate-forming bacteria: Agrobacterium atlanticum sp. nov.; Agrobacterium meteori sp. nov.; Agrobacterium ferrugineum sp. nov., nom. rev.; Agrobacterium gelatinovorum sp. nov., nom. rev.; and Agrobacterium stellulatum sp. nov., nom. rev. Int J Syst Bacteriol 42:133-143
20. Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI technical note 101. Microbial ID, Inc., Newark
21. Stackebrandt E, Goebel BM (1994) Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846-849 (Pubitemid 24315169)
22. Tamaoka J, Komagata K (1984) Determination of DNA base composition by reverse-phase high-performance liquid chromatography. FEMS Microbiol Lett 25:125-128 (Pubitemid 15217312)
23. Thompson JD, Higgins DG, Gibson TJ (1994) Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680 (Pubitemid 24354800)
24. Uchino Y, Hirata A, Yokota A, Sugiyama J (1998) Reclassification of marine Agrobacterium species: proposals of Stappia stellulata gen. nov., comb. nov., Stappia aggregata sp. nov., nom. rev., Ruegeria atlantica gen. nov., comb. nov., Ruegeria gelatinovora comb. nov., Ruegeria algicola comb. nov., and Ahrensia kieliense gen. nov., sp. nov., nom. rev. J Gen Appl Microbiol 44:201-210 (Pubitemid 28505134)
25. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray RGE (1987) International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463-464
26. Yi H, Chun J (2006) Thalassobius aestuarii sp. nov., isolated from tidal flat sediment. J Microbiol 44:171-176 (Pubitemid 44874792)
27. Yoon JH, Kim H, Kim SB, Kim HJ, Kim WY, Lee ST, Goodfellow M, Park YH (1996) Identification of Saccharomonospora strains by the use of genomic DNA fragments and rRNA gene probes. Int J Syst Bacteriol 46:502-505 (Pubitemid 26113877)
28. Yoon JH, Lee ST, Park YH (1998) Inter- and intraspecific phylogenetic analysis of the genus Nocardioides and related taxa based on 16S rDNA sequences. Int J Syst Bacteriol 48:187-194 (Pubitemid 28144651)
29. Yoon JH, Kang KH, Park YH (2003) Psychrobacter jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 53:449-454 (Pubitemid 36416752)
30. Yoon JH, Kang SJ, Lee SY (2012) Salinimonas lutimaris sp. nov., a polysaccharide-degrading bacterium isolated from a tidal flat. Antonie Van Leeuwenhoek 102:803-810
31. Yoon JH, Gyeong HR, Kim SI (2013a) Sungkyunkwania multivorans gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from seawater from a seaweed farm. Int J Syst Evol Microbiol 63:1995-2001
32. Yoon JH, Lee MH, Jung YT (2013b) Pseudofulvibacter geojedonensis gen. nov., sp. nov., a polysaccharide-degrading member of the family Flavobacteriaceae isolated from seawater, and emended description of the genus Fulvibacter. Int J Syst Evol Microbiol 63:1696-1701