메뉴 건너뛰기




Volumn 10, Issue 7, 2014, Pages

DNA Topoisomerase 1α Promotes Transcriptional Silencing of Transposable Elements through DNA Methylation and Histone Lysine 9 Dimethylation in Arabidopsis

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS PROTEIN; ARGONAUTE 4 PROTEIN; ARGONAUTE PROTEIN; CAMPTOTHECIN; DNA TOPOISOMERASE; DNA TOPOISOMERASE 1ALPHA; HISTONE; LONG UNTRANSLATED RNA; LUCIFERASE; LYSINE; PLANT DNA; PLANT RNA; RNA POLYMERASE; RNA POLYMERASE IV; RNA POLYMERASE V; SMALL UNTRANSLATED RNA; UNCLASSIFIED DRUG; RNA; TRANSPOSON;

EID: 84905474685     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1004446     Document Type: Article
Times cited : (24)

References (45)
  • 1
    • 34249337761 scopus 로고    scopus 로고
    • Perceptions of epigenetics
    • Bird A, (2007) Perceptions of epigenetics. Nature 447: 396-398.
    • (2007) Nature , vol.447 , pp. 396-398
    • Bird, A.1
  • 2
    • 77249170184 scopus 로고    scopus 로고
    • Establishing, maintaining and modifying DNA methylation patterns in plants and animals
    • Law JA, Jacobsen SE, (2010) Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nature Rev Genet 11: 204-220.
    • (2010) Nature Rev Genet , vol.11 , pp. 204-220
    • Law, J.A.1    Jacobsen, S.E.2
  • 3
    • 14844295120 scopus 로고    scopus 로고
    • RNA polymerase IV directs silencing of endogenous DNA
    • Herr AJ, Jensen MB, Dalmay T, Baulcombe DC, (2005) RNA polymerase IV directs silencing of endogenous DNA. Science 308: 118-120.
    • (2005) Science , vol.308 , pp. 118-120
    • Herr, A.J.1    Jensen, M.B.2    Dalmay, T.3    Baulcombe, D.C.4
  • 4
    • 22844447304 scopus 로고    scopus 로고
    • Atypical RNA polymerase subunits required for RNA-directed DNA methylation
    • Kanno T, Huettel B, Mette MF, Aufsatz W, Jaligot E, et al. (2005) Atypical RNA polymerase subunits required for RNA-directed DNA methylation. Nature Genetics 37: 761-765.
    • (2005) Nature Genetics , vol.37 , pp. 761-765
    • Kanno, T.1    Huettel, B.2    Mette, M.F.3    Aufsatz, W.4    Jaligot, E.5
  • 5
    • 14844302397 scopus 로고    scopus 로고
    • Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation
    • Onodera Y, Haag JR, Ream T, Costa Nunes P, Pontes O, et al. (2005) Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell 120: 613-622.
    • (2005) Cell , vol.120 , pp. 613-622
    • Onodera, Y.1    Haag, J.R.2    Ream, T.3    Costa Nunes, P.4    Pontes, O.5
  • 6
    • 24344433177 scopus 로고    scopus 로고
    • Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis
    • Pontier D, Yahubyan G, Vega D, Bulski A, Saez-Vasquez J, et al. (2005) Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis. Genes & Development 19: 2030-2040.
    • (2005) Genes & Development , vol.19 , pp. 2030-2040
    • Pontier, D.1    Yahubyan, G.2    Vega, D.3    Bulski, A.4    Saez-Vasquez, J.5
  • 7
    • 0037474126 scopus 로고    scopus 로고
    • ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation
    • Zilberman D, Cao X, Jacobsen SE, (2003) ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science 299: 716-719.
    • (2003) Science , vol.299 , pp. 716-719
    • Zilberman, D.1    Cao, X.2    Jacobsen, S.E.3
  • 8
    • 55449131096 scopus 로고    scopus 로고
    • Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes
    • Wierzbicki AT, Haag JR, Pikaard CS, (2008) Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes. Cell 135: 635-648.
    • (2008) Cell , vol.135 , pp. 635-648
    • Wierzbicki, A.T.1    Haag, J.R.2    Pikaard, C.S.3
  • 10
    • 84875741680 scopus 로고    scopus 로고
    • The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin
    • Zemach A, Kim MY, Hsieh PH, Coleman-Derr D, Eshed-Williams L, et al. (2013) The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin. Cell 153: 193-205.
    • (2013) Cell , vol.153 , pp. 193-205
    • Zemach, A.1    Kim, M.Y.2    Hsieh, P.H.3    Coleman-Derr, D.4    Eshed-Williams, L.5
  • 11
    • 27944500697 scopus 로고    scopus 로고
    • H3 lysine 9 methylation is maintained on a transcribed inverted repeat by combined action of SUVH6 and SUVH4 methyltransferases
    • Ebbs ML, Bartee L, Bender J, (2005) H3 lysine 9 methylation is maintained on a transcribed inverted repeat by combined action of SUVH6 and SUVH4 methyltransferases. Molecular and cellular biology 25: 10507-10515.
    • (2005) Molecular and Cellular Biology , vol.25 , pp. 10507-10515
    • Ebbs, M.L.1    Bartee, L.2    Bender, J.3
  • 12
    • 33745454548 scopus 로고    scopus 로고
    • Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase
    • Ebbs ML, Bender J, (2006) Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase. The Plant cell 18: 1166-1176.
    • (2006) The Plant Cell , vol.18 , pp. 1166-1176
    • Ebbs, M.L.1    Bender, J.2
  • 13
    • 0037041422 scopus 로고    scopus 로고
    • Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase
    • Jackson JP, Lindroth AM, Cao X, Jacobsen SE, (2002) Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase. Nature 416: 556-560.
    • (2002) Nature , vol.416 , pp. 556-560
    • Jackson, J.P.1    Lindroth, A.M.2    Cao, X.3    Jacobsen, S.E.4
  • 14
    • 84866981889 scopus 로고    scopus 로고
    • Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants
    • Du J, Zhong X, Bernatavichute YV, Stroud H, Feng S, et al. (2012) Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants. Cell 151: 167-180.
    • (2012) Cell , vol.151 , pp. 167-180
    • Du, J.1    Zhong, X.2    Bernatavichute, Y.V.3    Stroud, H.4    Feng, S.5
  • 15
    • 80055080002 scopus 로고    scopus 로고
    • Small RNAs prevent transcription-coupled loss of histone H3 lysine 9 methylation in Arabidopsis thaliana
    • Enke RA, Dong Z, Bender J, (2011) Small RNAs prevent transcription-coupled loss of histone H3 lysine 9 methylation in Arabidopsis thaliana. PLoS genetics 7: e1002350.
    • (2011) PLoS Genetics , vol.7
    • Enke, R.A.1    Dong, Z.2    Bender, J.3
  • 17
    • 0034923502 scopus 로고    scopus 로고
    • DNA topoisomerases: structure, function, and mechanism
    • Champoux JJ, (2001) DNA topoisomerases: structure, function, and mechanism. Annual Review of Biochemistry 70: 369-413.
    • (2001) Annual Review of Biochemistry , vol.70 , pp. 369-413
    • Champoux, J.J.1
  • 18
    • 81855198087 scopus 로고    scopus 로고
    • All tangled up: how cells direct, manage and exploit topoisomerase function
    • Vos SM, Tretter EM, Schmidt BH, Berger JM, (2011) All tangled up: how cells direct, manage and exploit topoisomerase function. Nature Rev Mol Cell Biol 12: 827-841.
    • (2011) Nature Rev Mol Cell Biol , vol.12 , pp. 827-841
    • Vos, S.M.1    Tretter, E.M.2    Schmidt, B.H.3    Berger, J.M.4
  • 19
    • 0036741494 scopus 로고    scopus 로고
    • Disruption of a DNA topoisomerase I gene affects morphogenesis in Arabidopsis
    • Takahashi T, Matsuhara S, Abe M, Komeda Y, (2002) Disruption of a DNA topoisomerase I gene affects morphogenesis in Arabidopsis. The Plant Cell 14: 2085-2093.
    • (2002) The Plant Cell , vol.14 , pp. 2085-2093
    • Takahashi, T.1    Matsuhara, S.2    Abe, M.3    Komeda, Y.4
  • 20
    • 84876195987 scopus 로고    scopus 로고
    • Generation of a luciferase-based reporter for CHH and CG DNA methylation in Arabidopsis thaliana
    • Dinh TT, O'Leary M, Won SY, Li S, Arroyo L, et al. (2013) Generation of a luciferase-based reporter for CHH and CG DNA methylation in Arabidopsis thaliana. Silence 4: 1.
    • (2013) Silence , vol.4 , pp. 1
    • Dinh, T.T.1    O'Leary, M.2    Won, S.Y.3    Li, S.4    Arroyo, L.5
  • 21
    • 0025719903 scopus 로고
    • Effect of local DNA sequence on topoisomerase I cleavage in the presence or absence of camptothecin
    • Jaxel C, Capranico G, Kerrigan D, Kohn KW, Pommier Y, (1991) Effect of local DNA sequence on topoisomerase I cleavage in the presence or absence of camptothecin. J Biol Chem 266: 20418-20423.
    • (1991) J Biol Chem , vol.266 , pp. 20418-20423
    • Jaxel, C.1    Capranico, G.2    Kerrigan, D.3    Kohn, K.W.4    Pommier, Y.5
  • 22
    • 0037180432 scopus 로고    scopus 로고
    • The mechanism of topoisomerase I poisoning by a camptothecin analog
    • Staker BL, Hjerrild K, Feese MD, Behnke CA, Burgin AB Jr, et al. (2002) The mechanism of topoisomerase I poisoning by a camptothecin analog. PNAS 99: 15387-15392.
    • (2002) PNAS , vol.99 , pp. 15387-15392
    • Staker, B.L.1    Hjerrild, K.2    Feese, M.D.3    Behnke, C.A.4    Burgin Jr., A.B.5
  • 23
    • 84869054771 scopus 로고    scopus 로고
    • Fast-forward genetics identifies plant CPL phosphatases as regulators of miRNA processing factor HYL1
    • Manavella PA, Hagmann J, Ott F, Laubinger S, Franz M, et al. (2012) Fast-forward genetics identifies plant CPL phosphatases as regulators of miRNA processing factor HYL1. Cell 151: 859-870.
    • (2012) Cell , vol.151 , pp. 859-870
    • Manavella, P.A.1    Hagmann, J.2    Ott, F.3    Laubinger, S.4    Franz, M.5
  • 26
    • 77953214806 scopus 로고    scopus 로고
    • MGOUN1 encodes an Arabidopsis type IB DNA topoisomerase required in stem cell regulation and to maintain developmentally regulated gene silencing
    • Graf P, Dolzblasz A, Wurschum T, Lenhard M, Pfreundt U, et al. (2010) MGOUN1 encodes an Arabidopsis type IB DNA topoisomerase required in stem cell regulation and to maintain developmentally regulated gene silencing. The Plant cell 22: 716-728.
    • (2010) The Plant Cell , vol.22 , pp. 716-728
    • Graf, P.1    Dolzblasz, A.2    Wurschum, T.3    Lenhard, M.4    Pfreundt, U.5
  • 27
    • 84872614860 scopus 로고    scopus 로고
    • Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome
    • Stroud H, Greenberg MV, Feng S, Bernatavichute YV, Jacobsen SE, (2013) Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome. Cell 152: 352-364.
    • (2013) Cell , vol.152 , pp. 352-364
    • Stroud, H.1    Greenberg, M.V.2    Feng, S.3    Bernatavichute, Y.V.4    Jacobsen, S.E.5
  • 28
    • 80054718602 scopus 로고    scopus 로고
    • Spontaneous epigenetic variation in the Arabidopsis thaliana methylome
    • Becker C, Hagmann J, Muller J, Koenig D, Stegle O, et al. (2011) Spontaneous epigenetic variation in the Arabidopsis thaliana methylome. Nature 480: 245-249.
    • (2011) Nature , vol.480 , pp. 245-249
    • Becker, C.1    Hagmann, J.2    Muller, J.3    Koenig, D.4    Stegle, O.5
  • 29
    • 80054837794 scopus 로고    scopus 로고
    • Transgenerational epigenetic instability is a source of novel methylation variants
    • Schmitz RJ, Schultz MD, Lewsey MG, O'Malley RC, Urich MA, et al. (2011) Transgenerational epigenetic instability is a source of novel methylation variants. Science 334: 369-373.
    • (2011) Science , vol.334 , pp. 369-373
    • Schmitz, R.J.1    Schultz, M.D.2    Lewsey, M.G.3    O'Malley, R.C.4    Urich, M.A.5
  • 30
    • 84865102012 scopus 로고    scopus 로고
    • Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome
    • Wierzbicki AT, Cocklin R, Mayampurath A, Lister R, Rowley MJ, et al. (2012) Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome. Genes & development 26: 1825-1836.
    • (2012) Genes & Development , vol.26 , pp. 1825-1836
    • Wierzbicki, A.T.1    Cocklin, R.2    Mayampurath, A.3    Lister, R.4    Rowley, M.J.5
  • 31
    • 52349089796 scopus 로고    scopus 로고
    • Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana
    • Bernatavichute YV, Zhang X, Cokus S, Pellegrini M, Jacobsen SE, (2008) Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana. PloS One 3: e3156.
    • (2008) PloS One , vol.3
    • Bernatavichute, Y.V.1    Zhang, X.2    Cokus, S.3    Pellegrini, M.4    Jacobsen, S.E.5
  • 32
    • 3342927934 scopus 로고    scopus 로고
    • Role of transposable elements in heterochromatin and epigenetic control
    • Lippman Z, Gendrel AV, Black M, Vaughn MW, Dedhia N, et al. (2004) Role of transposable elements in heterochromatin and epigenetic control. Nature 430: 471-476.
    • (2004) Nature , vol.430 , pp. 471-476
    • Lippman, Z.1    Gendrel, A.V.2    Black, M.3    Vaughn, M.W.4    Dedhia, N.5
  • 33
    • 33644858548 scopus 로고    scopus 로고
    • Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis
    • Tran RK, Zilberman D, de Bustos C, Ditt RF, Henikoff JG, et al. (2005) Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. Genome Biology 6: R90.
    • (2005) Genome Biology , vol.6
    • Tran, R.K.1    Zilberman, D.2    de Bustos, C.3    Ditt, R.F.4    Henikoff, J.G.5
  • 34
    • 72849124237 scopus 로고    scopus 로고
    • Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis
    • Zheng B, Wang Z, Li S, Yu B, Liu JY, et al. (2009) Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis. Genes & Development 23: 2850-2860.
    • (2009) Genes & Development , vol.23 , pp. 2850-2860
    • Zheng, B.1    Wang, Z.2    Li, S.3    Yu, B.4    Liu, J.Y.5
  • 35
    • 33745699398 scopus 로고    scopus 로고
    • An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana
    • Li CF, Pontes O, El-Shami M, Henderson IR, Bernatavichute YV, et al. (2006) An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana. Cell 126: 93-106.
    • (2006) Cell , vol.126 , pp. 93-106
    • Li, C.F.1    Pontes, O.2    El-Shami, M.3    Henderson, I.R.4    Bernatavichute, Y.V.5
  • 36
    • 84865279450 scopus 로고    scopus 로고
    • Development of a luciferase-based reporter of transcriptional gene silencing that enables bidirectional mutant screening in Arabidopsis thaliana
    • Won SY, Li S, Zheng B, Zhao Y, Li D, et al. (2012) Development of a luciferase-based reporter of transcriptional gene silencing that enables bidirectional mutant screening in Arabidopsis thaliana. Silence 3: 6.
    • (2012) Silence , vol.3 , pp. 6
    • Won, S.Y.1    Li, S.2    Zheng, B.3    Zhao, Y.4    Li, D.5
  • 37
    • 0023433855 scopus 로고
    • Supercoiling of the DNA template during transcription
    • Liu LF, Wang JC, (1987) Supercoiling of the DNA template during transcription. PNAS 84: 7024-7027.
    • (1987) PNAS , vol.84 , pp. 7024-7027
    • Liu, L.F.1    Wang, J.C.2
  • 38
    • 77954957199 scopus 로고    scopus 로고
    • Topoisomerase I regulates open chromatin and controls gene expression in vivo
    • Durand-Dubief M, Persson J, Norman U, Hartsuiker E, Ekwall K, (2010) Topoisomerase I regulates open chromatin and controls gene expression in vivo. EMBO J 29: 2126-2134.
    • (2010) EMBO J , vol.29 , pp. 2126-2134
    • Durand-Dubief, M.1    Persson, J.2    Norman, U.3    Hartsuiker, E.4    Ekwall, K.5
  • 41
    • 0037387829 scopus 로고    scopus 로고
    • A two-step scaffolding model for mitotic chromosome assembly
    • Maeshima K, Laemmli UK, (2003) A two-step scaffolding model for mitotic chromosome assembly. Developmental Cell 4: 467-480.
    • (2003) Developmental Cell , vol.4 , pp. 467-480
    • Maeshima, K.1    Laemmli, U.K.2
  • 42
    • 27744490770 scopus 로고    scopus 로고
    • Genetic interaction of the SMC complex with topoisomerase IV in Bacillus subtilis
    • Tadesse S, Mascarenhas J, Kosters B, Hasilik A, Graumann PL, (2005) Genetic interaction of the SMC complex with topoisomerase IV in Bacillus subtilis. Microbiology 151: 3729-3737.
    • (2005) Microbiology , vol.151 , pp. 3729-3737
    • Tadesse, S.1    Mascarenhas, J.2    Kosters, B.3    Hasilik, A.4    Graumann, P.L.5
  • 43
    • 42649089072 scopus 로고    scopus 로고
    • A structural-maintenance-of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation
    • Kanno T, Bucher E, Daxinger L, Huettel B, Bohmdorfer G, et al. (2008) A structural-maintenance-of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation. Nature Genetics 40: 670-675.
    • (2008) Nature Genetics , vol.40 , pp. 670-675
    • Kanno, T.1    Bucher, E.2    Daxinger, L.3    Huettel, B.4    Bohmdorfer, G.5
  • 44
    • 84855807682 scopus 로고    scopus 로고
    • Topoisomerase inhibitors unsilence the dormant allele of Ube3a in neurons
    • Huang HS, Allen JA, Mabb AM, King IF, Miriyala J, et al. (2012) Topoisomerase inhibitors unsilence the dormant allele of Ube3a in neurons. Nature 481: 185-189.
    • (2012) Nature , vol.481 , pp. 185-189
    • Huang, H.S.1    Allen, J.A.2    Mabb, A.M.3    King, I.F.4    Miriyala, J.5
  • 45


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.