Polarization of the endoplasmic reticulum by ER-septin tethering

Cell

Volumn 158, Issue 3, 2014, Pages 620-632

  Chao, Jesse T ^a   Wong, Andrew K O ^a   Tavassoli, Shabnam ^a   Young, Barry P ^a   Chruscicki, Adam ^a   Fang, Nancy N ^a   Howe, Leann J ^a   Mayor, Thibault ^a   Foster, Leonard J ^a   Loewen, Christopher J R ^a  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

CELL PROTEIN; PROTEIN EPO1; PROTEIN IST2; PROTEIN NUM1; PROTEIN SCS2; PROTEIN SHS1; SEPTIN; UNCLASSIFIED DRUG; CARRIER PROTEIN; CELL CYCLE PROTEIN; CYTOSKELETON PROTEIN; EPO1 PROTEIN, S CEREVISIAE; IST2 PROTEIN, S CEREVISIAE; MEMBRANE PROTEIN; NUM1 PROTEIN, S CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEIN; SCS2 PROTEIN, S CEREVISIAE; SHS1 PROTEIN, S CEREVISIAE;

ARTICLE; CELL CYCLE M PHASE; CELL CYCLE S PHASE; CELL GROWTH; CELL MEMBRANE; CELL NUCLEUS MEMBRANE; CELL POLARITY; ENDOPLASMIC RETICULUM; MOLECULAR INTERACTION; NONHUMAN; POLARIZATION; PRIORITY JOURNAL; YEAST; CHEMISTRY; CYTOLOGY; DIFFUSION; GENETICS; METABOLISM; SACCHAROMYCES CEREVISIAE;

CARRIER PROTEINS; CELL CYCLE PROTEINS; CELL POLARITY; CYTOSKELETAL PROTEINS; DIFFUSION; ENDOPLASMIC RETICULUM; MEMBRANE PROTEINS; NUCLEAR ENVELOPE; S PHASE; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS;

EID: 84905391271     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2014.06.033     Document Type: Article

References (53)

1. F. Caudron, and Y. Barral Septins and the lateral compartmentalization of eukaryotic membranes Dev. Cell 16 2009 493 506
2. J.T. Chao, L.J. Foster, and C.J. Loewen Identification of protein complexes with quantitative proteomics in S. cerevisiae J. Vis. Exp. 25 2009 pii: 1225
3. M. Costanzo, A. Baryshnikova, J. Bellay, Y. Kim, E.D. Spear, C.S. Sevier, H. Ding, J.L. Koh, K. Toufighi, and S. Mostafavi et al. The genetic landscape of a cell Science 327 2010 425 431
4. T. Cui-Wang, C. Hanus, T. Cui, T. Helton, J. Bourne, D. Watson, K.M. Harris, and M.D. Ehlers Local zones of endoplasmic reticulum complexity confine cargo in neuronal dendrites Cell 148 2012 309 321
5. J. Dobbelaere, and Y. Barral Spatial coordination of cytokinetic events by compartmentalization of the cell cortex Science 305 2004 393 396
6. T.A. Egelhofer, J. Villén, D. McCusker, S.P. Gygi, and D.R. Kellogg The septins function in G1 pathways that influence the pattern of cell growth in budding yeast PLoS ONE 3 2008 e2022
7. M. Evangelista, K. Blundell, M.S. Longtine, C.J. Chow, N. Adames, J.R. Pringle, M. Peter, and C. Boone Bni1p, a yeast formin linking cdc42p and the actin cytoskeleton during polarized morphogenesis Science 276 1997 118 122
8. M. Farkasovsky, and H. Küntzel Yeast Num1p associates with the mother cell cortex during S/G2 phase and affects microtubular functions J. Cell Biol. 131 1995 1003 1014
9. M. Faty, M. Fink, and Y. Barral Septins: a ring to part mother and daughter Curr. Genet. 41 2002 123 131
10. M.A. Fischer, K. Temmerman, E. Ercan, W. Nickel, and M. Seedorf Binding of plasma membrane lipids recruits the yeast integral membrane protein Ist2 to the cortical ER Traffic 10 2009 1084 1097
11. K. Furuita, J. Jee, H. Fukada, M. Mishima, and C. Kojima Electrostatic interaction between oxysterol-binding protein and VAMP-associated protein A revealed by NMR and mutagenesis studies J. Biol. Chem. 285 2010 12961 12970
12. G. Garcia 3rd, A. Bertin, Z. Li, Y. Song, M.A. McMurray, J. Thorner, and E. Nogales Subunit-dependent modulation of septin assembly: budding yeast septin Shs1 promotes ring and gauze formation J. Cell Biol. 195 2011 993 1004
13. R.A. Heil-Chapdelaine, J.R. Oberle, and J.A. Cooper The cortical protein Num1p is essential for dynein-dependent interactions of microtubules with the cortex J. Cell Biol. 151 2000 1337 1344
14. M. Iwase, J. Luo, E. Bi, and A. Toh-e Shs1 plays separable roles in septin organization and cytokinesis in Saccharomyces cerevisiae Genetics 177 2007 215 229
15. S.E. Kaiser, J.H. Brickner, A.R. Reilein, T.D. Fenn, P. Walter, and A.T. Brunger Structural basis of FFAT motif-mediated ER targeting Structure 13 2005 1035 1045
16. C.J. Loewen, A. Roy, and T.P. Levine A conserved ER targeting motif in three families of lipid binding proteins and in Opi1p binds VAP EMBO J. 22 2003 2025 2035
17. C.J. Loewen, B.P. Young, S. Tavassoli, and T.P. Levine Inheritance of cortical ER in yeast is required for normal septin organization J. Cell Biol. 179 2007 467 483
18. C. Luedeke, S.B. Frei, I. Sbalzarini, H. Schwarz, A. Spang, and Y. Barral Septin-dependent compartmentalization of the endoplasmic reticulum during yeast polarized growth J. Cell Biol. 169 2005 897 908
19. S.W. Michnick, P.H. Ear, E.N. Manderson, I. Remy, and E. Stefan Universal strategies in research and drug discovery based on protein-fragment complementation assays Nat. Rev. Drug Discov. 6 2007 569 582
20. J.R. Newman, E. Wolf, and P.S. Kim A computationally directed screen identifying interacting coiled coils from Saccharomyces cerevisiae Proc. Natl. Acad. Sci. USA 97 2000 13203 13208
21. A.L. Nishimura, M. Mitne-Neto, H.C. Silva, A. Richieri-Costa, S. Middleton, D. Cascio, F. Kok, J.R. Oliveira, T. Gillingwater, and J. Webb et al. A mutation in the vesicle-trafficking protein VAPB causes late-onset spinal muscular atrophy and amyotrophic lateral sclerosis Am. J. Hum. Genet. 75 2004 822 831
22. D. Pruyne, A. Legesse-Miller, L. Gao, Y. Dong, and A. Bretscher Mechanisms of polarized growth and organelle segregation in yeast Annu. Rev. Cell Dev. Biol. 20 2004 559 591
23. S. Sepsenwol, H. Ris, and T.M. Roberts A unique cytoskeleton associated with crawling in the amoeboid sperm of the nematode, Ascaris suum J. Cell Biol. 108 1989 55 66
24. S. Sharma, A. Quintana, G.M. Findlay, M. Mettlen, B. Baust, M. Jain, R. Nilsson, A. Rao, and P.G. Hogan An siRNA screen for NFAT activation identifies septins as coordinators of store-operated Ca2+ entry Nature 499 2013 238 242
25. Z. Shcheprova, S. Baldi, S.B. Frei, G. Gonnet, and Y. Barral A mechanism for asymmetric segregation of age during yeast budding Nature 454 2008 728 734
26. K.A. Shepard, A.P. Gerber, A. Jambhekar, P.A. Takizawa, P.O. Brown, D. Herschlag, J.L. DeRisi, and R.D. Vale Widespread cytoplasmic mRNA transport in yeast: identification of 22 bud-localized transcripts using DNA microarray analysis Proc. Natl. Acad. Sci. USA 100 2003 11429 11434
27. F. Spira, N.S. Mueller, G. Beck, P. von Olshausen, J. Beig, and R. Wedlich-Söldner Patchwork organization of the yeast plasma membrane into numerous coexisting domains Nat. Cell Biol. 14 2012 640 648
28. T. Tada, A. Simonetta, M. Batterton, M. Kinoshita, D. Edbauer, and M. Sheng Role of Septin cytoskeleton in spine morphogenesis and dendrite development in neurons Curr. Biol. 17 2007 1752 1758
29. P.A. Takizawa, J.L. DeRisi, J.E. Wilhelm, and R.D. Vale Plasma membrane compartmentalization in yeast by messenger RNA transport and a septin diffusion barrier Science 290 2000 341 344
30. X. Tang, B.S. Germain, and W.-L. Lee A novel patch assembly domain in Num1 mediates dynein anchoring at the cortex during spindle positioning J. Cell Biol. 196 2012 743 756
31. K. Tarassov, V. Messier, C.R. Landry, S. Radinovic, M.M. Serna Molina, I. Shames, Y. Malitskaya, J. Vogel, H. Bussey, and S.W. Michnick An in vivo map of the yeast protein interactome Science 320 2008 1465 1470
32. A.H. Tong, G. Lesage, G.D. Bader, H. Ding, H. Xu, X. Xin, J. Young, G.F. Berriz, R.L. Brost, and M. Chang et al. Global mapping of the yeast genetic interaction network Science 303 2004 808 813
33. A. Toulmay, and W.A. Prinz A conserved membrane-binding domain targets proteins to organelle contact sites J. Cell Sci. 125 2012 49 58
34. M. Versele, B. Gullbrand, M.J. Shulewitz, V.J. Cid, S. Bahmanyar, R.E. Chen, P. Barth, T. Alber, and J. Thorner Protein-protein interactions governing septin heteropentamer assembly and septin filament organization in Saccharomyces cerevisiae Mol. Biol. Cell 15 2004 4568 4583
35. W. Wagner, S.D. Brenowitz, and J.A. Hammer 3rd Myosin-Va transports the endoplasmic reticulum into the dendritic spines of Purkinje neurons Nat. Cell Biol. 13 2011 40 48
36. E. Yeh, R.V. Skibbens, J.W. Cheng, E.D. Salmon, and K. Bloom Spindle dynamics and cell cycle regulation of dynein in the budding yeast, Saccharomyces cerevisiae J. Cell Biol. 130 1995 687 700
37. L.J. Foster, C.L. De Hoog, and M. Mann Unbiased quantitative proteomics of lipid rafts reveals high specificity for signaling factors Proc. Natl. Acad. Sci. USA 100 2003 5813 5818
38. Y. Ishihama, J. Rappsilber, and M. Mann Modular stop and go extraction tips with stacked disks for parallel and multidimensional Peptide fractionation in proteomics J. Proteome Res. 5 2006 988 994
39. J.-P. Lambert, L. Mitchell, A. Rudner, K. Baetz, and D. Figeys A novel proteomics approach for the discovery of chromatin-associated protein networks Mol. Cell. Proteomics 8 2009 870 882
40. C.J. Loewen, and T.P. Levine A highly conserved binding site in vesicle-associated membrane protein-associated protein (VAP) for the FFAT motif of lipid-binding proteins J. Biol. Chem. 280 2005 14097 14104
41. A. Lupas, M. Van Dyke, and J. Stock Predicting coiled coils from protein sequences Science 252 1991 1162 1164
42. C. Meisinger, N. Pfanner, and K.N. Truscott Isolation of yeast mitochondria Methods Mol. Biol. 313 2006 33 39
43. P. Mortensen, J.W. Gouw, J.V. Olsen, S.-E. Ong, K.T.G. Rigbolt, J. Bunkenborg, J. Cox, L.J. Foster, A.J.R. Heck, and B. Blagoev et al. MSQuant, an open source platform for mass spectrometry-based quantitative proteomics J. Proteome Res. 9 2010 393 403
44. O. Puig, F. Caspary, G. Rigaut, B. Rutz, E. Bouveret, E. Bragado-Nilsson, M. Wilm, and B. Séraphin The tandem affinity purification (TAP) method: a general procedure of protein complex purification Methods 24 2001 218 229
45. J. Rappsilber, Y. Ishihama, and M. Mann Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics Anal. Chem. 75 2003 663 670
46. J. Rappsilber, M. Mann, and Y. Ishihama Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips Nat. Protoc. 2 2007 1896 1906
47. E.A. Reits, and J.J. Neefjes From fixed to FRAP: measuring protein mobility and activity in living cells Nat. Cell Biol. 3 2001 E145 E147
48. M.A. Sheff, and K.S. Thorn Optimized cassettes for fluorescent protein tagging in Saccharomyces cerevisiae Yeast 21 2004 661 670
49. A. Shevchenko, I. Chernushevich, M. Wilm, and M. Mann De Novo peptide sequencing by nanoelectrospray tandem mass spectrometry using triple quadrupole and quadrupole/time-of-flight instruments Methods Mol. Biol. 146 2000 1 16
50. R.S. Sikorski, and P. Hieter A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae Genetics 122 1989 19 27
51. A.H. Tong, and C. Boone Synthetic genetic array analysis in Saccharomyces cerevisiae Methods Mol. Biol. 313 2006 171 192
52. T. Yeung, G.E. Gilbert, J. Shi, J. Silvius, A. Kapus, and S. Grinstein Membrane phosphatidylserine regulates surface charge and protein localization Science 319 2008 210 213
53. B.P. Young, and C.J.R. Loewen Balony: a software package for analysis of data generated by synthetic genetic array experiments BMC Bioinformatics 14 2013 354