Establishment of three new genera in the family Geminiviridae: Becurtovirus, Eragrovirus and Turncurtovirus

Archives of Virology

Volumn 159, Issue 8, 2014, Pages 2193-2203

  Varsani, Arvind ^a,b,c   Navas Castillo, Jesús ^d   Moriones, Enrique ^d   Hernández Zepeda, Cecilia ^e   Idris, Ali ^f   Brown, Judith K ^g   Murilo Zerbini, F ^h   Martin, Darren P ^c  

^a UNIVERSITY OF CANTERBURY   (New Zealand)

^b UNIVERSITY OF FLORIDA   (United States)

^c UNIVERSITY OF CAPE TOWN   (South Africa)

^d CSIC   (Spain)

^e CENTRO DE INVESTIGACIÓN CIENTÍFICA DE YUCATÁN   (Mexico)

^f KING ABDULLAH UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Saudi Arabia)

^g UNIVERSITY OF ARIZONA   (United States)

^h FEDERAL UNIVERSITY OF VIÇOSA   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

BETA VULGARIS SUBSP. VULGARIS; BRASSICA RAPA SUBSP. RAPA; CIRCULIFER HAEMATOCEPS; DNA VIRUSES; ERAGROSTIS; ERAGROSTIS CURVULA; GEMINIVIRIDAE; SPINACIA OLERACEA;

CLASSIFICATION; GEMINIVIRIDAE; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; PHYLOGENY; PLANT; PLANT DISEASE; VIROLOGY; VIRUS GENOME;

GEMINIVIRIDAE; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT DISEASES; PLANTS;

EID: 84905226337     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-014-2050-2     Document Type: Article

References (40)

1. Abascal F, Zardoya R, Posada D (2005) ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21: 2104-2105.
2. Adams MJ, King AM, Carstens EB (2013) Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2013). Arch Virol 158: 2023-2030.
3. Anisimova M, Gascuel O (2006) Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative. Syst Biol 55: 539-552.
4. Bernardo P, Golden M, Akram M, Nadarajan N, Naimuddin, Fernandez E, Granier M, Rebelo AG, Peterschmitt M, Martin DP, Roumagnac P (2013) Identification and characterisation of a highly divergent geminivirus: evolutionary and taxonomic implications. Virus Res 177: 35-45.
5. Briddon RW, Heydarnejad J, Khosrowfar F, Massumi H, Martin DP, Varsani A (2010) Turnip curly top virus, a highly divergent geminivirus infecting turnip in Iran. Virus Res 152: 169-175.
6. Brown JK, Fauquet CM, Briddon RW, Zerbini M, Moriones E, Navas-Castillo J (2012) Virus taxonomy: Ninth report of the International Committee on Taxonomy of Viruses. Academic press, London.
7. Buchmann RC, Asad S, Wolf JN, Mohannath G, Bisaro DM (2009) Geminivirus AL2 and L2 proteins suppress transcriptional gene silencing and cause genome-wide reductions in cytosine methylation. J Virol 83: 5005-5013.
8. Darriba D, Taboada GL, Doallo R, Posada D (2011) ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics 27: 1164-1165.
9. Dayaram A, Opong A, Jaschke A, Hadfield J, Baschiera M, Dobson RC, Offei SK, Shepherd DN, Martin DP, Varsani A (2012) Molecular characterisation of a novel cassava associated circular ssDNA virus. Virus Res 166: 130-135.
10. Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
11. Edgar RC (2004) MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinform 5: 113.
12. Fauquet CM, Maxwell DP, Gronenborn B, Stanley J (2000) Revised proposal for naming geminiviruses. Arch Virol 145: 1743-1761.
13. Fauquet CM, Briddon RW, Brown JK, Moriones E, Stanley J, Zerbini M, Zhou X (2008) Geminivirus strain demarcation and nomenclature. Arch Virol 153: 783-821.
14. Gharouni Kardani S, Heydarnejad J, Zakiaghl M, Mehrvar M, Kraberger S, Varsani A (2013) Diversity of beet curly top Iran virus isolated from different hosts in Iran. Virus Genes 46: 571-575.
15. Guindon S, Delsuc F, Dufayard JF, Gascuel O (2009) Estimating maximum likelihood phylogenies with PhyML. Methods Mol Biol 537: 113-137.
16. Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3. 0. Syst Biol 59: 307-321.
17. Haible D, Kober S, Jeske H (2006) Rolling circle amplification revolutionizes diagnosis and genomics of geminiviruses. J Virol Methods 135: 9-16.
18. Hernandez-Zepeda C, Varsani A, Brown JK (2013) Intergeneric recombination between a new, spinach-infecting curtovirus and a new geminivirus belonging to the genus Becurtovirus: first New World exemplar. Arch Virol 158: 2245-2254.
19. Heydarnejad J, Keyvani N, Razavinejad S, Massumi H, Varsani A (2013) Fulfilling Koch's postulates for beet curly top Iran virus and proposal for consideration of new genus in the family Geminiviridae. Arch Virol 158: 435-443.
20. Inoue-Nagata AK, Albuquerque LC, Rocha WB, Nagata T (2004) A simple method for cloning the complete begomovirus genome using the bacteriophage phi29 DNA polymerase. J Virol Methods 116: 209-211.
21. Kraberger S, Stainton D, Dayaram A, Zawar-Reza P, Gomez C, Harding JS, Varsani A (2013) Discovery of Sclerotinia sclerotiorum Hypovirulence-Associated Virus-1 in Urban River sediments of heathcote and Styx Rivers in Christchurch City, New Zealand. Genome Announc 1(4): e00559-e005913.
22. Krenz B, Thompson JR, Fuchs M, Perry KL (2012) Complete genome sequence of a new circular DNA virus from grapevine. J Virol 86: 7715.
23. Loconsole G, Saldarelli P, Doddapaneni H, Savino V, Martelli GP, Saponari M (2012) Identification of a single-stranded DNA virus associated with citrus chlorotic dwarf disease, a new member in the family Geminiviridae. Virology 432: 162-172.
24. Luna AP, Morilla G, Voinnet O, Bejarano ER (2012) Functional analysis of gene-silencing suppressors from tomato yellow leaf curl disease viruses. Mol Plant Microbe Interact 25: 1294-1306.
25. Moffat AS (1999) Plant pathology-geminiviruses emerge as serious crop threat. Science 286: 1835.
26. Muhire B, Martin DP, Brown JK, Navas-Castillo J, Moriones E, Zerbini FM, Rivera-Bustamante R, Malathi VG, Briddon RW, Varsani A (2013) A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae). Arch Virol 158: 1411-1424.
27. Owor BE, Shepherd DN, Taylor NJ, Edema R, Monjane AL, Thomson JA, Martin DP, Varsani A (2007) Successful application of FTA((R)) Classic Card technology and use of bacteriophage phi 29 DNA polymerase for large-scale field sampling and cloning of complete maize streak virus genomes. J Virol Methods 140: 100-105.
28. Poojari S, Alabi OJ, Fofanov VY, Naidu RA (2013) A leafhopper-transmissible DNA virus with novel evolutionary lineage in the family geminiviridae implicated in grapevine redleaf disease by next-generation sequencing. PloS one 8: e64194.
29. Razavinejad S, Heydarnejad J (2013) Transmission and natural hosts of Turnip curly top virus. Iran J Plant Pathol 49: 27-28.
30. Razavinejad S, Heydarnejad J, Kamali M, Massumi H, Kraberger S, Varsani A (2013) Genetic diversity and host range studies of turnip curly top virus. Virus Genes 46: 345-353.
31. Shepherd DN, Martin DP, Lefeuvre P, Monjane AL, Owor BE, Rybicki EP, Varsani A (2008) A protocol for the rapid isolation of full geminivirus genomes from dried plant tissue. J Virol Methods 149: 97-102.
32. Sikorski A, Arguello-Astorga GR, Dayaram A, Dobson RC, Varsani A (2013) Discovery of a novel circular single-stranded DNA virus from porcine faeces. Arch Virol 158: 283-289.
33. Soleimani R, Matic S, Taheri H, Behjatnia SAA, Vecchiati M, Izadpanah K, Accotto GP (2013) The unconventional geminivirus Beet curly top Iran virus: satisfying Koch's postulates and determining vector and host range. Ann Appl Biol 162: 174-181.
34. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
35. Varsani A, Shepherd DN, Dent K, Monjane AL, Rybicki EP, Martin DP (2009) A highly divergent South African geminivirus species illuminates the ancient evolutionary history of this family. Virol J 6: 36.
36. Varsani A, Martin DP, Navas-Castillo J, Moriones E, Hernandez-Zepeda C, Idris A, Murilo Zerbini F, Brown JK (2014) Revisiting the classification of curtoviruses based on genome-wide pairwise identity. Arch Virol. doi: 10. 1007/s00705-014-1982-x.
37. Wang B, Li F, Huang C, Yang X, Qian Y, Xie Y, Zhou X (2014) V2 of tomato yellow leaf curl virus can suppress methylation-mediated transcriptional gene silencing in plants. J Gen Virol 95: 225-230.
38. Wright EA, Heckel T, Groenendijk J, Davies JW, Boulton MI (1997) Splicing features in maize streak virus virion- and complementary-sense gene expression. Plant J 12: 1285-1297.
39. Yazdi HR, Heydarnejad J, Massumi H (2008) Genome characterization and genetic diversity of beet curly top Iran virus: a geminivirus with a novel nonanucleotide. Virus Genes 36: 539-545.
40. Yu X, Li B, Fu YP, Jiang DH, Ghabrial SA, Li GQ, Peng YL, Xie JT, Cheng JS, Huang JB, Yi XH (2010) A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus. In: Proceedings of the National Academy of Sciences of the United States of America, vol 107. pp 8387-8392.