Successful application of FTA® Classic Card technology and use of bacteriophage φ{symbol}29 DNA polymerase for large-scale field sampling and cloning of complete maize streak virus genomes

Journal of Virological Methods

Volumn 140, Issue 1-2, 2007, Pages 100-105

  Owor, Betty E ^a   Shepherd, Dionne N ^a   Taylor, Nigel J ^b   Edema, Richard ^c   Monjane, Adérito L ^a   Thomson, Jennifer A ^a   Martin, Darren P ^a   Varsani, Arvind ^a  

^a UNIVERSITY OF CAPE TOWN   (South Africa)

^b DONALD DANFORTH PLANT SCIENCE CENTER   (United States)

^c MAKERERE UNIVERSITY   (Uganda)

Author keywords

FTA cards; Geminivirus; Maize streak virus (MSV); MSV diversity; Phi29 DNA polymerase; Rolling circle amplification

Indexed keywords

BACTERIOPHAGE PHI29 DNA POLYMERASE; DNA POLYMERASE; RESTRICTION ENDONUCLEASE; UNCLASSIFIED DRUG; VIRUS DNA;

ARTICLE; CLONING VECTOR; CONTROLLED STUDY; DNA EXTRACTION; DNA SEQUENCE; GENE AMPLIFICATION; MAIZE STREAK VIRUS; MICROBIAL DIVERSITY; MOLECULAR CLONING; NONHUMAN; PLANT LEAF; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; ROOM TEMPERATURE; SAMPLING; VIRUS GENOME;

BACILLUS PHAGES; BIOTECHNOLOGY; CLONING, MOLECULAR; DNA, VIRAL; DNA-DIRECTED DNA POLYMERASE; FILTRATION; GENETIC VECTORS; GENOME, VIRAL; MAIZE STREAK VIRUS; NUCLEIC ACID AMPLIFICATION TECHNIQUES; PAPER; PHYLOGENY; PLANT LEAVES; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; TIME FACTORS; ZEA MAYS;

GEMINIVIRIDAE; MAIZE STREAK VIRUS; ZEA MAYS;

EID: 33846798148     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2006.11.004     Document Type: Article

References (18)

1. Bosque-Pérez N.A. Eight decades of maize streak virus research. Virus Res. 71 (2000) 107-121
2. Guindon S., and Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 (2003) 696-704
3. Haible D., Kober S., and Jeske H. Rolling circle amplification revolutionizes diagnosis and genomics of geminiviruses. J. Virol. Methods 135 (2006) 9-16
4. Inoue-Nagata A.K., Albuquerque L.C., Rocha W.B., and Nagata T. A simple method for cloning the complete begomovirus genome using the bacteriophage phi29 DNA polymerase. J. Virol. Methods 116 (2004) 209-211
5. Kiprop E.K., Baudoin J.P., Mwang'ombe A.W., Kimani P.M., Mergeai G., and Maquet A. Characterization of Kenyan isolates of Fusarium udum from Pigeonpea [Cajanus cajan (L.) Millsp.] by cultural characteristics aggressiveness and AFLP analysis. J. Phytopathol. 150 (2002) 517-525
6. Lee C., Grasso C., and Shalow M.F. Multiple sequence alignment using partial order graphs. Bioinformatics 18 (2002) 452-464
7. Legg J.P., and Fauquet C.M. Cassava mosaic geminiviruses in Africa. Plant Mol. Biol. 56 (2004) 585-599
8. Louie R. Vascular puncture of maize kernels for the mechanical transmission of maize white line mosaic virus and other viruses of maize. Phytopathology 85 (1995) 139-143
9. Mansoor S., Briddon R.W., Bull S.E., et al. Cotton leaf curl disease is associated with multiple monopartite begomoviruses supported by single DNA beta. Arch. Virol. 148 (2003) 1969-1986
10. Martin D.P., Willment J.A., Billharz R., Velders R., Odhiambo B., Njuguna J., James D., and Rybicki E.P. Sequence diversity and virulence in Zea mays of Maize streak virus isolates. Virology 288 (2001) 247-255
11. Moffat A.S. Geminiviruses emerge as serious crop threat. Science 286 (1999) 1835
12. Ndunguru J., Taylor N.J., Yadav J., Aly H., Legg J.P., Aveling T., Thompson G., and Fauquet C.M. Application of FTA technology for sampling, recovery and molecular characterization of viral pathogens and virus-derived transgenes from plant tissues. Virol. J. 2 (2005) 45
13. Redinbaugh M.G. Transmission of maize streak virus by vascular puncture inoculation with unit-length genomic DNA. J. Virol. Methods 109 (2003) 95-98
14. Redinbaugh M.G., Louie R., Ngwira P., Edema R., Gordon D.T., and Bisaro D.M. Transmission of viral RNA and DNA to maize kernels by vascular puncture inoculation. J. Virol. Methods 98 (2001) 135-143
15. Shepherd D.N., Martin D.P., McGivern D.R., Boulton M.I., Thomson J.A., and Rybicki E.P. A three-nucleotide mutation altering the maize streak virus Rep pRBR-interaction motif reduces symptom severity in maize and partially reverts at high frequency without restoring pRBR-Rep binding. J. Gen. Virol. 86 (2005) 803-813
16. Shepherd D.N., Mangwende T., Martin D.P., Bezuidenhout M., Thomson J.A., and Rybicki E.P. Inhibition of maize streak virus (MSV) replication by transient and transgenic expression of MSV replication-associated protein mutants. J. Gen. Virol. 88 (2007) 325-336
17. Vanderschuren, H., Stupak, M., Futterer, J., Gruissem, W. and Zhang, P., 2006. Engineering resistance to geminiviruses - review and perspectives. Plant Biotechnology Journal in press.(doi:10.1111/j.1467-7652.2006.00217.x).
18. Willment J.A., Martin D.P., and Rybicki E.P. Analysis of the diversity of African streak mastreviruses using PCR-generated RFLPs and partial sequence data. J. Virol. Methods 93 (2001) 75-87